| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 743135 = | NA (NA) | 12 (0.480) | 7/260 | 2.0 | NA | coding (1233/1422 nt) | PP_0635 | group II intron‑encoding maturase |
| ? | NC_002947 | 1427338 = | NA (NA) | coding (1229/1422 nt) | PP_1250 | group II intron‑encoding maturase | |||||
GTATCGAGACCAGCCCGAGCCGGTCCCACAGTTTCTTTGGCAGCGCGTAGTTCATATGTTGCGCTCCCGAATTCCACCATGGACCTCGGCCATTGAAGGCTGACTTGTTGGCACGCTCCTCGCTCAACCCTAGGCGCATCAAGTTTCTCAGCCTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/743289‑743135‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagcctcCCACGAGGCTGAGAAACTTGATGCGCCTGGGGTTGAGCGAGGAGCGTGCCAACAAGTCAGCCTTCAATGGCCGAGGTCCATGGTGGAATTCGGGAGCGCAACATATGAACTACGCGCTGCCAAAGAAACTGTGGGACCGGCTCGGGCTG > NC_002947/1427338‑1427486 GTATCGAGACCAGCCCGAGCCGGTCCCACAGTTTCTTTGGCAGCGCGTAGTTCATATGTTGCGCTCCCGAATTCCACCATGGACCTCGGCCATTGAAGGCTGACTTGTTGGCACGCTCCTCGCTCAACCCTAGGCGCATCAAGTTTCTCA < 1:165076/150‑1GTATCGAGACCAGCCCGAGCCGGTCCCACAGTTTCTTTGGCAGCGCGTAGTTCATATGTTGCGCTCCCGAATTCCACCATGGACCTCGGCCATTGAAGGCTGACTTGTTGGCACGCTCCTCGCTCAACCCTAGGCGCATCAAGTTTCTCA < 1:262133/150‑1 ATCGAGACCAGCCCGAGCCGGTCCCACAGTTTCTTTGGCAGCGCGTAGTTCATATGTTGCGCTCCCGAATTCCACCATGGACCTCGGCCATTGAAGGCTGACTTGTTGGCACGCTCCTCGCTCAACCCTAGGCGCATCAAGTTTCTCAGC < 2:314020/150‑1 ATCGAGACCAGCCCGAGCCGGTCCCACAGTTTCTTTGGCAGCGCGTAGTTCATATGTTGCGCTCCCGAATTCAGCCATGTACCTCGGCCATTGAAGGCTGACTTGTTGGCACGCTCCTCGCTCAACCCTAGGCGCATCAAGTTTCTCAGC < 1:399007/150‑1 AGCCGGTCCCACAGTTTCTTTGGCAGCGCGTAGTTCATATGTTGCGCTCCCGAATTCCACCATGGACCTCGGCCATTGAAGGCTGACTTGTTGGCACGCTCCTCGCTCAACCCTAGGCGCATCAAGTTTCTCAGCCTCCCACGAGGCTGA < 1:589387/150‑1 AGCCGGTCCCACAGTTTCTTTGGCAGCGCGTAGTTCATATGTTGCGCTCCCGAATTCCACCATGGACCTCGGCCATTGAAGGCTGACTTGTTGGCACGCTCCTCGCTCAACCCCAGGCGCATCAAGTTTCTCAGCCTCCCACGAGGCTGA < 1:456334/150‑1 GCCGGTCCCACAGTTTCTTTGGCAGCGCGTAGTTCATATGTTGCGCTCCCGAATTCCACCATGGACCTCGGCCATTGAAGGCTGACTTGTTGGCACGCTCCTCGCTCAACCCTAGGCGCATCAAGTTTCTCAGCCTCCCACGAGGCTGAG < 1:96864/150‑1 GCCGGTCCCACAGTTTCTTTGGCAGCGCGTAGTTCATATGTTGCGCTCCCGAATTCCACCATGGACCTCGGCCATTGAAGGCTGACTTGTTGGCACGCTCCTCGCTCAACCCTAGGCGCATCAAGTTTCTCAGCCTCCCACGAGGCTGAG < 1:134068/150‑1 ATATGTTGCGCTCCCGAATTCCACCATGGACCTCGGCCATTGAAGGCTGACTTGTTGGCACGCTCCTCGCTCAACCCTAGGCGCATCAAGTTTCTCAGCCTCCCACGAGGCTGA < 1:286851/114‑1 ATATGTTGCGCTCCCGAATTCCACCATGGACCTCGGCCATTGAAGGCTGACTTGTTGGCACGCTCCTCGCTCAACCCTAGGCGCATCAAGTTTCTCAGCCTCCCACGAGGCTGA > 2:286851/1‑114 TGGACCTCGGCCATTGAAGGCTGACTTGTTGGCACGCTCCTCGCTCAACCCTAGGCGCATCAAGTTTCTCAGCCTCCCACGAGGCTG < 2:496406/87‑1 TGGACCTCGGCCATTGAAGGCTGACTTGTTGGCACGCTCCTCGCTCAACCCTAGGCGCATCAAGTTTCTCAGCCTCCCACGAGGCTG > 1:496406/1‑87 TTGTTGGCACGCTCCTCGCTCAACCCCAGGCGCATCAAGTTTCTCAGCCTCCCACGAGGCTGA > 1:30134/1‑63 TTGTTGGCACGCTCCTCGCTCAACCCCAGGCGCATCAAGTTTCTCAGCCTCCCACGAGGCTGA < 2:30134/63‑1 GCACGCTCCTCGCTCAACCCTAGGCGCATCAAGTTTCTCAGCCTCCCACGAGGCTGAGAA < 1:323020/60‑1 GCACGCTCCTCGCTCAACCCTAGGCGCATCAAGTTTCTCAGCCTCCCACGAGGCTGAGAA > 2:323020/1‑60 CCTCCCACGAGGCTGAGAAACTTGATGCGCCTGGGGTTGAGCGAGGAGCGTGCCAACAAGTCAGCCTTCAATGGCCGAGGTCCATGGTGTAATTCGGGAGCGTAACATATGAACTACGCGCTGCCAAAGAAACTGTGGGACCGGCTCGGG < 1:325989/150‑1 tTCCCACGAGGCTGAGAAACTTGATGCGCCTGGGGTTGAGCGAGGAGCGTGCCAACAAGTCAGCCTTCAATGGCCGAGGTCCATGGTGGAATTCGGGAGCGCAACATATGAACTACGCGCTGCCAAAGAAACTGTGGGACCGGCTCGGGC < 1:274264/149‑1 CTCCCACGAGGCGGAGAAACTTGATGCGCCTGGGGTTGAGCGAGGAGCGTGCCAACAAGTCAGCCTTCAATGGCCGAGGTCCATGGTGGAATTCGGGAGCGCAACATATGAACTACGCGCTGCCAAAGAAACTGTGGGACCGGCTCGGGC > 2:428895/1‑150 TCCCACGAGGCTGAGAAACTTGATGCGCCTGGGGTTGAGCGAGGAGCGTGCCAACAAGTCAGCCTTCAATGGCCGAGGTCCATGGTGGAATTCGGGCGCGCAACATATGAACTACGC > 1:521245/1‑117 TCCCACGAGGCTGAGAAACTTGATGCGCCTGGGGTTGAGCGAGGAGCGTGCCAACAAGTCAGCCTTCAATGGCCGAGGTCCATGGTGGAATTCGGGAGCGCAACATATGAACTACGC < 2:521245/117‑1 CCCACGAGGCTGAGAAACTTGATGCGCCTGGGGTTGAGCGAGGAGCGTGCCAACAAGTCAGCCTTCAATGGCCGAGGTCCATGGTGGAATTCGGGAGCGCAACATATGAACTACGCGCTGCCAAAGAAACTGTGGGACCGGCTCGGGCTG < 2:612015/150‑1 GTATCGAGACCAGCCCGAGCCGGTCCCACAGTTTCTTTGGCAGCGCGTAGTTCATATGTTGCGCTCCCGAATTCCACCATGGACCTCGGCCATTGAAGGCTGACTTGTTGGCACGCTCCTCGCTCAACCCTAGGCGCATCAAGTTTCTCAGCCTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/743289‑743135‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagcctcCCACGAGGCTGAGAAACTTGATGCGCCTGGGGTTGAGCGAGGAGCGTGCCAACAAGTCAGCCTTCAATGGCCGAGGTCCATGGTGGAATTCGGGAGCGCAACATATGAACTACGCGCTGCCAAAGAAACTGTGGGACCGGCTCGGGCTG > NC_002947/1427338‑1427486 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |