New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2414792 =	10 (0.380)	4 (0.160)	4/262	2.9	21.9%	intergenic (+291/‑54)	PP_2114/PP_2115	transposase/hypothetical protein
	?	NC_002947	= 4022333	19 (0.750)					coding (17/942 nt)	PP_3547	NAD(P)‑binding oxidoreductase

GCGATGGCGACACTGACTCACCTTTTCGCCCTTACGGCGAGTCACTTTTTGTCAAACGCGACAAAAAGTAACCAAAAAACGCTGCGCTCCCATCATCCGGCCCCTGCGCTGCGCTCCGGGGTCCCCTCACTCCGGCCTTGCTCCCGGCAGGACCGCGCCGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTTCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAG  >  NC_002947/2414647‑2414929                                                                                                                                                  |                                                                                                                                          gcgATGGCGACACTGACTCACCTTTTCGCCCTTACGGCGAGTCACTTTTTGTCAAACGCGACAAAAAGTAACCAAAAAACGCTGCGCTCCCATCATCCGGCCCCTGCGCTGCGCTCCGGGGTCCCCTCACTCCGGCCTTGCTCCCGGCAg                                                                                                                                       <  2:167835/150‑1 (MQ=35)  aataggcgaaatcgcgctgcgttggaatgacgaacatcagcacagccaaccctctgcttttgatctggcttttgatctggcttttgatcttgatcttgatcttgatcttcgcgacttcaggaggccgaacgcaggccttgcggaGGCAgg                                                                                                                                      <  1:584252‑M1/6‑1 (MQ=255)      ggcgaaatcgcgctgcgttggaatgacgaacatcagcacagccaaccctctgcttttgatctggcttttgatctggcttttgatcttgatcttgatcttgatcttcgcgacttcaggaggccgaacgcaggccttgcggaGGCAGGACcg                                                                                                                                  <  2:516563‑M1/10‑1 (MQ=255)                                               ccaaccctctgcttttgatctggcttttgatctggcttttgatcttgatcttgatcttgatcttcgcgacttcaggaggccgaacgcaggccttgcggaGGCAGGACCGCGCCGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCa                                                                                         <  2:129694‑M1/51‑1 (MQ=255)                                                  accctctgcttttgatctggcttttgatctggcttttgatcttgatcttgatcttgatcttcgcgacttcaggaggccgaacgcaggccttgcggaGGCAGGACCGCGCCGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATcc                                                                                      >  1:516563‑M1/97‑150 (MQ=255)                                                               gatctggcttttgatctggcttttgatcttgatcttgatcttgatcttcgcgacttcaggaggccgaacgcaggccttgcggaGGCAGGACCGCGCCGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCt                                                                         >  1:129694‑M1/84‑150 (MQ=255)                                                                                          cttgatcttgatcttgatcttcgcgacttcaggaggccgaacgcaggccttgcggaGGCAg                                                                                                                                       <  1:625499‑M1/5‑1 (MQ=255)                                                                                          cttgatcttgatcttgatcttcgcgacttcaggaggccgaacgcaggccttgcggaGGCAg                                                                                                                                       >  2:625499‑M1/57‑61 (MQ=255)                                                                                               atcCGGCCCCTGCGCTGCGCTCCGGGGTCCCCTCACTCCGGCCTTGCTCCCGGCAGGACCGCGCCGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTTCGCAAGGCCTGCGTTCGGCCCCCTGaa                                         <  1:247886/150‑1 (MQ=17)                                                                                                      cccTGCGCTGCGCTCCGGGGTCCCCTCACTCCGGCCTTGCTCCCGGCAGGACCGCGCCGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTTCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGa                                  >  2:484486/1‑150 (MQ=32)                                                                                                        ctgcgctgcgCTCCGGGGTCCCCTCACTCCGGCCTTGCTCCCGGCAGGACCGCGCCGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTTCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGaag                                >  2:297619/1‑150 (MQ=32)                                                                                                                            cccTCACTCCGGCCTTGCTCCCGGCAGGACCGCGCCGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTTCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGaag                                <  1:539376/130‑1 (MQ=33)                                                                                                                            cccTCACTCCGGCCTTGCTCCCGGCAGGACCGCGCCGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTTCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGaag                                >  2:539376/1‑130 (MQ=33)                                                                                                                            cccTCACTCCGGCCTTGCTCCCGGCAGGACCGCGCCGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTTCGCAAGACCTGCGTTCGGCCTCCTGAAGTCGCGaagatcaagatcaagatcaagat            >  2:344647/1‑150 (MQ=17)                                                                                                                                 aCTCCGGCCTTGCTCCCGGCAGGACCGCGCCGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTTCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGaagatcaagatcaagatcaagatcaaga       >  2:389233/1‑150 (MQ=32)                                                                                                                                    ccGGCCTTGCTCCCGGCAGGACCGCGCCGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTTCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGaagatcaagatcaagatcaagatcaagatca    <  1:113365/150‑1 (MQ=32)                                                                                                                                      ggCCTTGCTCCCGGCAGGACCGCGCCGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTTCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGaagatcaagatcaagatcaagatcaagatcaag  >  2:629492/1‑150 (MQ=32)                                                                                                                                                  |                                                                                                                                          GCGATGGCGACACTGACTCACCTTTTCGCCCTTACGGCGAGTCACTTTTTGTCAAACGCGACAAAAAGTAACCAAAAAACGCTGCGCTCCCATCATCCGGCCCCTGCGCTGCGCTCCGGGGTCCCCTCACTCCGGCCTTGCTCCCGGCAGGACCGCGCCGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTTCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAG  >  NC_002947/2414647‑2414929

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.