New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4533623	32 (1.210)	8 (0.330)	7/250	1.9	22.2%	intergenic (+21/‑153)	PP_4020/cpo	oxidoreductase/non‑heme chloroperoxidase
	?	NC_002947	= 4533688	27 (1.120)					intergenic (+86/‑88)	PP_4020/cpo	oxidoreductase/non‑heme chloroperoxidase

CTGTTGGCGCTGTACCAAGGCATCGACAACGGCCGCTTCCCCGGCGGCGACCTGCTGGCTGCGCCTTTGGAAGCTGCGGCAAAGGCCTGGTACCGCATGCGCGACCGTGTCTGAAGGGCATCAGTGTTGCCTGTGCGGGCCTCTTCGCGGGTGAAAGGGACCTCACAGTGTAGGAGCGGGTTCACCTGCGAAGAGGCCCACACAGGCAACACAACTTCCTGATACCCGCCAAAATCCCTCCTATTCTCAATAGCTCCCTTCGCTTCCTGCA  >  NC_002947/4533489‑4533759                                                                                                                                       |                                                                                                                                         cTGTTGGCGCTGTACCAAGGCATCGACAACGGCCGCTTCCCCGGCGGCGACCTGCTGGCTGCGCCTTTGGAAGCTGCGGCAAAGGCCTGGTACCGCATGCGCGACCGTGTCTGAAGGGCATCAGTGTTGCCTGTGtgggcctcttcgcag                                                                                                                           >  2:435441‑M1/1‑135 (MQ=255)         gcTGTACCAAGGCATCGACAACGGCCGCTTCCCCGGCGGCGACCTGCTGGCTGCGCCTTTGGAAGCTGCGGCAAAGGCCTGGTACCGCATGCGCGACCGTGTCTGAAGGGCATCAGTGTTGCCTGTGCGGGCCTCTTCGCGGGTGAAAgg                                                                                                                   <  2:628806/150‑1 (MQ=255)         gcTGTACCAAGGCATCGACAAAGGCCGCTTCCCCGGCGGCGACCTGCGGGCTGCGCCTTTGGAAGCTGCGGCAAAGGCCTGGTACCGCATGCGCGACCGTGTCTGAAGGGCATCAGTGTTGCCTGTGCGGGCCTCTTCGCGGGTGAAAgg                                                                                                                   >  2:360402/1‑150 (MQ=255)           tGTACCAAGGCATCGACAACGGCCGCTTCCCCGGCGGCGACCTGCTGGCTGCGCCTTTGGAAGCTGCGGCAAAGGCCTGGTACCGCATGCGCGACCGTGTCTGAAGGGCATCAGTGTTGCCTGTGCGGGCCTCTTCGCGGGTGAAAGGGa                                                                                                                 <  1:435694/150‑1 (MQ=255)            gTACCAAGGCATCGACAACGGCCGCTTCCCCGGCGGCGACCTGCTGGCTGCGCCTTTGGAAGCTGCGGCAAAGGCCTGGTACCGCATGCGCGACCGTGTCTGAAGGGCATCAGTGTTGCCTGTGCGGGCCTCTTCGCGGGTGAAAGGGAc                                                                                                                <  2:439499/150‑1 (MQ=255)                cAAGGCATCGACAACGGCCGCTTCCCCGGCGGCGACCTGCTGGCTGCGCCTTTGGAAGCTGCGGCAAAGGCCTGGTACCGCATGCGCGACCGTGTCTGAAGGGCATCAGTGTTGCCTGTGtgggcctcttcgcaggcgaacccgctccta                                                                                                            >  1:277245‑M1/1‑120 (MQ=255)                    gCATCGACAACGGCCGCTTCCCCGGCGGCGACCTGCTGGCTGCGCCTTTGGAAGCTGCGGCAAAGGCCTGGTACCGCATGCGCGACCGTGTCTGAAGGGCATCAGTGTTGCCTGTGCGGGCCTCTTCGCGGGTGAAAGGGACCTCACAgt                                                                                                        >  1:469874/1‑150 (MQ=255)                    gCATCGACAACGGCCGCTTCCCCGGCGGCGACCTGCTGGCTGCGCCTTTGGAAGCTGCGGCAAAGGCCTGGTACCGCATGCGCGACCGTGTCTGAAGGGAATCAGTGTTTCATGTGCGTGCCTCTTGGCGGGTGAAAGGGACCTCACAgt                                                                                                        >  1:624308/1‑150 (MQ=255)                          aCAACGGCCGCTTCCCCGGCGGCGACCTGCTGGCTGCGCCTTTGGAAGCTGCGGCAAAGGCCTGGTACCGCATGCGCGACCGTGTCTGAAGGGCATCAGTGTTGCCTGTGCGGGCCTCTTCGCGGGTGAAAGGGACCTCACAGTGTAg                                                                                                    <  2:489685/148‑1 (MQ=255)                          aCAACGGCCGCTTCCCCGGCGGCGACCTGCTGGCTGCGCCTTTGGAAGCTGCGGCAAAGGCCTGGTACCGCATGCGCGACCGTGTCTGAAGGGCATCAGTGTTGCCTGTGCGGGCCTCTTCGCGGGTGAAAGGGACCTCACAGTGTAg                                                                                                    >  1:489685/1‑148 (MQ=255)                                        cccGGCGGCGACCTGCTGGCTGCGCCTTTGGAAGCTGCGGCAAAGGCCTGGTACCGCATGCGCGACCGTGTCTGAAGGGCATCAGTGTTGCCTGTGcgggcctcttcgcaggtgaacccgctcctacactgtgaggtccctttcacccgc                                                                                    <  1:539881‑M1/150‑55 (MQ=255)                                         ccGGCGGCGACCTGCTGGCTGCGCCTTTGGAAGCTGCGGCAAAGGCCTGGTACCGCATGCGCGACCGTGTCTGAAGGGCATCAGTGTTGCCTGTGCGGGCCTCTTCGCGGGTGAAAGGGACCTCACAGTGTAGGAGCGGGTTCACCTGCg                                                                                   >  2:142149/1‑150 (MQ=255)                                         ccGGCGGCGACCTGCTGGCTGCGCCTTTGGAAGCTGCGGCAAAGGCCTGGTACCGCATGCGCGACCGTGTCTGAAGGGCATCAGTGTTGCCTGTGCGGGCCTCTTCGCGGGTGAAAGGGACCTCACAGTGTAGGAGCGGGTTCACCTGCg                                                                                   >  1:249567/1‑150 (MQ=255)                                         ccGGCGGCGACCTGCTGGCTGCGCCTTTGGAAGCTGCGGCAAAGGCCTGGTACCGCATGCGCGACCGTGTCTGAAGGGCATCAGCGTTGCCTGTGtgggcctcttcgcaggtgaacccgctcctacactgtgaggtccctttcacccgcg                                                                                   >  2:579225‑M1/1‑95 (MQ=255)                                             cggcgACCTGCTGGCTGCGCCTTTGGAAGCTGCGGCAAAGGCCTGGTACCGCATGCGCGACCGTGTCTGAAGGGCATCAGCGTTGCCTGTGtgggcctcttcgcaggtgaacccgctcctacactgtgaggtccctttcacccgcgaaga                                                                               <  1:579225‑M1/150‑60 (MQ=255)                                                cgACCTGCTGGCTGCGCCTTTGGAAGCTGCGGCAAAGGCCTGGTACCGCATGCGCGACCGTGTCTGAAGGGCATCAGTGTTGCCTGTGtgggcctcttcgcaggtgaacccgctcctacactgtgaggtccctttcacccgcgaagaggc                                                                            <  1:435441‑M1/150‑63 (MQ=255)                                                cgACCTGCTGGCTGCGCCTTTGGAAGCTGCGGCAAAGGCCTGGTACCGCATGCGCGACCGTGTCTGAAGGGCATCAGTGTTGCCTGTGtgggcctcttcgcaggcgaacccgctcctacactgtgaggtccctttcacccgcgaagaggc                                                                            <  2:277245‑M1/150‑63 (MQ=255)                                                 gACCTGCTGGCTGCGCCTTTGGAAGCTGCGGCAAAGGCCTGGTACCGCATGCGCGACCGTGTCTGAAGGGCATCAGTGTTGCCTGTGCGGGCCTCTTCGCTGGTGAAAGGGACCTCACAGTGTAGGAGCGGGTTCACCTGCGAAGAGGcc                                                                           >  2:436828/1‑150 (MQ=255)                                                 gACCTGCTGGCTGCGCCTTTGGAAGCTGCGGCAAAGGCCTGGTACCGCATGCGCGACCGTGTCTGAAGGGCATCAGTGTTGCCTGTGCGGGCCTCTTCGCGGGTGAAAGGGACCTCACAGTGTAg                                                                                                    <  1:507712/125‑1 (MQ=255)                                                 gACCTGCTGGCTGCGCCTTTGGAAGCTGCGGCAAAGGCCTGGTACCGCATGCGCGACCGTGTCTGAAGGGCATCAGTGTTGCCTGTGCGGGCCTCTTCGCGGGTGAAAGGGACCTCACAGTGTAg                                                                                                    >  2:507712/1‑125 (MQ=255)                                                             gcgaCTTTTGACGCTGCGGTAAAGCCCTAGGACCGCATGCGCGACCGTGTCTGAGGGCCATCAGTCTTCCCTGTGCAGGCCTCTTCGCGGATGAGAGGGACCTCACAGTGTAGGAGCGGGTTCACCTGTGAAGAGGCCCACACAGCCAac                                                               <  2:252587/150‑1 (MQ=255)                                                                 cTTTGGAAGCTGCGGCAAAGGCCTGGTACCGCATGCGCGACCGTGTCTGAAGGGCATCAGTGTTGCCTGTGCGTGCCTCTTCGCGGGTGAAAGGGACCTCACAGTGTAGGAGCGGGTTCACCTGCGAAGAGGCCCACACAGGCAACACaa                                                           >  2:106738/1‑150 (MQ=255)                                                                 cTTTGGAAGCTGCGGCAAAGGCCTGGTACCGCATGCGCGACCGTGTCTGAAGGGCATCAGTGTTGCCTGTGCGGGCCTCTTCGCGGGTGAAAGGGACCTCACAGTGTAGGAGCGGGTTCACCTGCGAAGAGGCCCACACAGGCAACACaa                                                           >  1:347399/1‑150 (MQ=255)                                                                     ggAAGCTGCGGCAAAGGCCTGGTACCGCATGCGCGACCGTGTCTGAAGGGCATCAGTGTTGCCTGTGtgggcctcttcgcaggtgaacccgctcctagactgtgaggtccctttcccccgcgaagaggcccgcacaggcaacactgatgc                                                       <  2:110932‑M1/150‑84 (MQ=255)                                                                            gCGGCAAAGGCCTGGTACCGCATGCGCGACCGTGTCTGAAGGGCATCAGTGTTGCCTGTGCGGGCCTCTTCGCGGGTGAAAGGGACCTCACAGTGTAGGAGCGGGTTCACCTGCGAAGAGGCCCACACAGGCAACACAACTTCCTGATAc                                                <  2:469874/150‑1 (MQ=255)                                                                                       cTGGTACCGCATGCGCGACCGTGTCTGAAGGGCATCAGTGCTGCCTGTGCGGGCCTCTTCGCGAGGGATAGGGACCTCCCGGTGTAGGCCCGGGTGCACCTACGAACACACCCACACAGCCAACACAACTTCCTTATACCCGCCaaaaac                                     >  2:611537/1‑148 (MQ=255)                                                                                        tGGTACCGCATGCGCGACCGTGTCTGAAGGGCATCAGTGTTGCCTGTGCGTGCCTCTTCGCGGGTGAAAGGGACCTCACAGTGTAGGAGCGGGTTCACCTGCGAAGAGGCCCACACAGGCAACACAACTTCCTGATACCCGCCAAAATcc                                    <  1:106738/150‑1 (MQ=255)                                                                                        tGGTACCGCATGCGCGACCGTGTCTGAAGGGCATCAGTGTTGCCTGTGCGGGCCTCTTCGCGGGTGAAAGGGACCTCACAGTGTAGGAGCGGGTTCACCTGCGAAGAGGCCCACACAGGCAACACAACTTCCTGATACCCGCCAAAATcc                                    <  2:195601/150‑1 (MQ=255)                                                                                         ggTACCGCATGCGCGACCGTGTCTGAAGGGCATCAGTGTTGCCTGTGCGGGCCTCTTCGCGGGTGAAAGGGACCTCACAGTGTAGGAGCGGGTTCACCTGCGAAGAGGCCCACACAGGCAACACAACTTCCTGATACCCGCCAAAATccc                                   <  2:347399/150‑1 (MQ=255)                                                                                                cATGCGCGACCGTGTCTGAAGGGCATCAGTGTTGCCTGTGCGGGCCTCTTCGCTGGTGAAAGGGACCTCACAGTGTAGGAGCGGGTTCACCTGCGAAGAGGCCCACACAGGCAACACAACTTCCTGATACCCGCCAAAATCCCTCCTAtt                            <  1:436828/150‑1 (MQ=255)                                                                                                     gcgAGCGTGTCTGAAGGGCATTAGTGTTGCCTGTGCGGGCCTCTTCGCGGGTTAAAGGGACCTCACAGTGTATGAGCGGGTTCACTTGCGAAGAGGCCCACACAGGCAACACAACTTCCTGATACCCGCCAAAGTCCCTCCTATTCTCaa                       <  2:118670/150‑1 (MQ=255)                                                                                                       gACCGTGTCTGAAGGGCATCAGTGTTGCCTGTGCGGGCCTCTTCGCGGGTGAAAGGGACCTCACAGTGTAGGAGCGGGTTCACCTGCGAAGAGGCCCACACAGGCAACACAACTTCCTGATACCCGCCAAAATCCCTCCTATTCTCAATa                     <  1:223136/150‑1 (MQ=255)                                                                                                       gACCGTGTCTGAAGGGCATCAGTGTTGCCTGTGCGGGCCTCTTCGCGGGTGAAAGGGACCTCACAGTGTAGGAGCGGGTTCACCTGCGAAGAGGCCCACACAGGCAACACAACTTCCTGATACCCGCCAAAATCCCTCCTATTCTCAATa                     >  1:789/1‑150 (MQ=255)                                                                                                                tGAAGGGCATCAGTGTTGCCTGTGCGGGCCTCTTCGCGGGTGAAAGGGACCTCACAGTGTAGGAGCGGGTTCACCTGCGAAGAGGCCCACACAGGCAACACAACTTCCTGATACCCGCCAAAATCCCTCCTATTCTCAATAGCTCCCTTc            >  2:82767/1‑150 (MQ=255)                                                                                                                  aaGGGCATCAGTGTTGCCTGTGCGGGCATCTTCGCGGGTGAAAGGGACCTCACAGTGTAGGAGCGGGTTCACCTGCGAAGAgg                                                                             <  2:3999/83‑1 (MQ=255)                                                                                                                  aaGGGCATCAGTGTTGCCTGTGCGGGCATCTTCGCGGGTGAAAGGGACCTCACAGTGTAGGAGCGGGTTCACCTGCGAAGAgg                                                                             >  1:3999/1‑83 (MQ=255)                                                                                                                      gCATCAGTGTTGCCTGTGCGGGCCTCTTCGCGGGGGAAAGGGACCTCACAGTCTAGGAGCGGGTTCACCTGCGAAGAGGCCCAcacaggcaacactgatgcccttcagacacggtcgcgcatgcggtaccaggcctttgccgcagcttcc      <  2:110932‑M2/150‑68 (MQ=255)                                                                                                                       cATCAGTGTTGCCTGTGCGGGCCTCTTCGCGGGTGAAAGGGACCTCACAGTGTAGGAGCGGGTTCACCTGCGAAGAGGCCCACACAGGCAACACAACTTCCTGATACCCGCCAAAATCCCTCCTATTCTCAATAGCTCCCTTCGCTTCCt     <  1:82767/150‑1 (MQ=255)                                                                                                                        aTCAGTGTTGCCTGTGCGGGCCTCTTCGCGGGTGAAAGGGACCTCACAGTGTAGGAGCGGGTTCACCTGCGAAGAGGCCCACACAGGCAACACAACTTCCTGATACCCGCCAAAATCCCTCCTATTCTCAATAGCTCCCTTCGCTTCCTg    >  2:68925/1‑150 (MQ=255)                                                                                                                         tCAGTGTTGCCTGTGCGGGCCTCTTCGCGGGTGAAAGGGACCTCACAGTGTAGGAGCGGGTTCACCTGCGAAGAGGCCCACACAGGCAACACAACTTCCTGATACCCGCCAAAATCCCTCCTATTCTCAATAGCTCCCTTCGCTTCCTGc   >  2:641133/1‑150 (MQ=255)                                                                                                                          cAGTGTTGCCTGTGCGGGCCTCTTCGCGGGTGAAAGGGACCTCACAGTGTAGGAGCGGGTTCACCTGCGAAGAGGCCCACACAGGCAACACAACTTCCTGATACCCGCCAAAATCCCTCCTATTCTCAATAGCTCCCTTCGCTTCCTGCa  <  2:77079/150‑1 (MQ=255)                                                                                                                                       |                                                                                                                                         CTGTTGGCGCTGTACCAAGGCATCGACAACGGCCGCTTCCCCGGCGGCGACCTGCTGGCTGCGCCTTTGGAAGCTGCGGCAAAGGCCTGGTACCGCATGCGCGACCGTGTCTGAAGGGCATCAGTGTTGCCTGTGCGGGCCTCTTCGCGGGTGAAAGGGACCTCACAGTGTAGGAGCGGGTTCACCTGCGAAGAGGCCCACACAGGCAACACAACTTCCTGATACCCGCCAAAATCCCTCCTATTCTCAATAGCTCCCTTCGCTTCCTGCA  >  NC_002947/4533489‑4533759

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.