New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1419553 =	12 (0.450)	3 (0.150)	3/210	2.7	23.8%	intergenic (‑36/+101)	PP_1242/PP_1244	hypothetical protein/hypothetical protein
	?	NC_002947	1419647 =	10 (0.490)					intergenic (‑130/+7)	PP_1242/PP_1244	hypothetical protein/hypothetical protein

TCCTGGCAGGGGATGCCGGGTTCGATGCGGAACAGCGGGTGAGTGTTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGA  >  NC_002947/1419405‑1419689                                                                                                                                                     |                                                                                                                                         ctcaaacccaccgcccacagctcgatcgtgatgcaggccgtgatccatgaaatggaagcggtacaggggctggtcgagtcggcgttgatgcagttgcagatgcggtcgcatttacccacagagcctcacaccttgcattagcaggtcagg                                                                                                                                         >  1:131534‑M1/149‑150 (MQ=255)  tcaaacccaccgcccacagctcgatcgtgatgcaggccgtgatccatgaaatggaagcggtacaggggctggtcgagtcggcgttgatgcagttgcagatgcggtcgcatttacccacagagcctcacaccttgcattagcaggtcaGGc                                                                                                                                        <  1:85368‑M1/3‑1 (MQ=255)    aaacccaccgcccacagctcgatcgtgatgcaggccgtgatccatgaaatggaagcggtacaggggctggtcgagtcggcgttgatgcagttgcagatgcggtcgcatttacccacagagcctcacaccttgcattagcaggtcaGGCct                                                                                                                                      <  2:192322‑M1/5‑1 (MQ=255)        ccgccgcccacagctcgatcgtgatgcaggccgtgatccatgaaatggaagcggtacaggggctggtcgagtcggcggtgatgcagttgcagatgcggtcgcatttacccacagagccttacaccttgcattagcaggtcaGGCCTCTTc                                                                                                                                  >  1:255806‑M1/142‑150 (MQ=255)          gggATGCCGGGTTCGATGCGGAACAGCGGGTGAGTGTTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGC                                                                                                                                >  2:387320‑M1/1‑150 (MQ=255)              tGCCGGGTTCGATGCGGAACAGCGGGTGAGTGTTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGC                                                                                                                            >  1:101582‑M1/1‑150 (MQ=255)                        gatcgtgatgcaggccgtgatccatgaaatggaagcggtacaggggctggtcgagtcggcgttgatgcagttgcagatgcggtcgcatttacccacagagcctcacaccttgcattagcaggtcaGGCCTCTTCGCGGGCACGCCCGCTc                                                                                                                  <  1:457341‑M1/25‑1 (MQ=255)                         aTGCGGAACAGCGGGTGAGTGTTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCC                                                                                                                 >  1:553640‑M1/1‑150 (MQ=255)                          tcgtgatgcaggccgtgatccatgaaatggaagcggtacaggggctggtcgagtcggcgttgatgcagttgcagatgcggtcgcatttacccacagagcctcacaccttgcattagcaggtcaGGCCTCTTCGCGGGCACGCCCGCTccc                                                                                                                <  1:145011‑M1/27‑1 (MQ=255)                            cGGAACAGCGGGTGAGTGTTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCAC                                                                                                              >  1:557407‑M1/1‑150 (MQ=255)                              gatgcaggccgtgatccatgaaatggaagcggtacaggggctggtcgagtcggcgttgatgcagttgcagatgcggtcgcatttacccacagagcctcacaccttgcattagcaggtcaGGCCTCTTCGCGGGCACGCCCGCTCCCACAg                                                                                                            <  2:172069‑M1/31‑1 (MQ=255)                              gatgcaggccgtgatccatgaaatggaagcggtacaggggctggtcgagtcggcgttgatgcagttgcagatgcggtcgcatttacccacagagcctcacaccttgcattagcaggtcaGGCCTCTTCGCGGGCACGCCCGCTCCCACAg                                                                                                            >  2:145011‑M1/120‑150 (MQ=255)                              gatgcaggccgtgatccatgaaatggaagcggtacaggggctggtcgagtcggcgttgatgcagttgcagatgcggtcgcatttacccacagagcctcacaccttgcattagcaggtcaGGCCTCTTCGCGGGCACGCCCGCTCCCACAg                                                                                                            >  2:432586‑M1/120‑150 (MQ=255)                              gAACAGCGGGTGAGTGTTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAG                                                                                                            <  2:101582‑M1/150‑1 (MQ=255)                               gagcgggggtgagggGTGTTTTCGCCTTGGTAGAAGGTGGGCTTGCCGGCTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGG                                                                                                           <  2:136105‑M1/144‑1 (MQ=255)                                   gCGGGTGAGTGTTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACt                                                                                                       <  2:553640/150‑1 (MQ=255)                                     gccgtgatccatgaaatggaagcggtacaggggctggtcgagtcggcgttgatgcagttgcagatgcggtcgcatttacccacagagcctcacaccttgcattagcaggtcaGGCCTCTTCGCGGGCACGCCCGCTCCCACAgg                                                                                                           >  1:364175‑M1/113‑144 (MQ=255)                                     gccgtgatccatgaaatggaagcggtacaggggctggtcgagtcggcgttgatgcagttgcagatgcggtcgcatttacccacagagcctcacaccttgcattagcaggtcaGGCCTCTTCGCGGGCACGCCCGCTCCCACAgg                                                                                                           <  2:364175‑M1/32‑1 (MQ=255)                                         gAGTGTTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAg                                                                                                 <  1:192561/150‑1 (MQ=255)                                                       ccTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGC                                                                                                                    >  1:212740‑M1/1‑117 (MQ=255)                                                       ccTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGC                                                                                                                    <  2:212740‑M1/117‑1 (MQ=255)                                                        cTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCtgtg                                                                                  >  1:491414/1‑150 (MQ=255)                                                               gAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCtg                                                                                    >  2:192765/1‑141 (MQ=255)                                                               gAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCtg                                                                                    <  1:192765/141‑1 (MQ=255)                                                               gAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACcc                                                                           <  2:136770‑M2/150‑3 (MQ=255)                                                                  gCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACcctgt                                                                        >  1:483910‑M2/1‑145 (MQ=255)                                                                   gggctggtcgagtcggcgttgatgcagttgcagatgcggtcgcatttacccacagagcctcacaccttgcattagcaggtcaGGCCTCTTcgc                                                                                                                                >  2:275456‑M1/83‑93 (MQ=255)                                                                   gggctggtcgagtcggcgttgatgcagttgcagatgcggtcgcatttacccacagagcctcacaccttgcattagcaggtcaGGCCTCTTcgc                                                                                                                                <  1:275456‑M1/11‑1 (MQ=255)                                                                    aGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGgtcaccacagccgtcacgcactgcacagtacctgtgg                                                                      <  1:4753‑M1/150‑38 (MQ=255)                                                                    aGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGgtcaccacagccgtcacgcactgcacagtacctgtgg                                                                      <  2:557407‑M1/150‑38 (MQ=255)                                                                    aGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGgtcaccacagccgtcacgcactgcacagtacctgtgg                                                                      <  1:234303‑M1/150‑38 (MQ=255)                                                                      gTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGTCAGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGgtcaccacagccgtcacgcactgcacagtacctgtggga                                                                    <  1:121873‑M1/150‑40 (MQ=255)                                                                      gTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACcctgtggga                                                                    >  2:491414‑M2/1‑141 (MQ=255)                                                                        cTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGgtcaccacagccgtcacgcactgcacagtacctgtgggagc                                                                  <  2:564169‑M1/150‑42 (MQ=255)                                                                          tcgagtcggcgttgatgcagttgcagatgcggtcgcatttacccacagagcctcacaccttgcattagcaggtcaGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCgg                                                                >  2:563237‑M1/76‑150 (MQ=255)                                                                            ccGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGgtcaccacagccgtcacgcactgcacagtacctgtgggagcgggc                                                              <  1:290252‑M1/150‑46 (MQ=255)                                                                                cTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACcctgtgggagcgggcgtgc                                                          >  1:387320‑M2/1‑131 (MQ=255)                                                                                cTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCGGGGTTGCTTGGGCTGGCCTCTTCGCGGGCACGCTCGCTCCCACAGGTACTGTGCCGTGCGTTACGGCTGTGGCGACcctgtgagagcgggcgtgc                                                          >  2:15900‑M2/1‑131 (MQ=255)                                                                                  gcgttgatgcagttgcagatgcggtcgcatttacccacagagcctcacaccttgcattagcaggtcaGGCCTCTTCGCGGGCACGccc                                                                                                                      >  2:567479‑M1/68‑88 (MQ=255)                                                                                  gcgttgatgcagttgcagatgcggtcgcatttacccacagagcctcacaccttgcattagcaggtcaGGCCTCTTCGCGGGCACGccc                                                                                                                      <  1:567479‑M1/21‑1 (MQ=255)                                                                                     gtggGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGgtcaccacagccgtcacgcactgcacagtacctgtgggagcgg                                                                >  2:12761‑M1/1‑96 (MQ=255)                                                                                     gtggGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGgtcaccacagccgtcacgcactgcacagtacctgtgggagcgg                                                                <  1:12761‑M1/139‑44 (MQ=255)                                                                                         gTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACcctgtgggagcgggcgtgcccgcgaaga                                                 >  2:354414‑M2/1‑122 (MQ=255)                                                                                               ttgtgttgtCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTg                                           >  2:407610/1‑150 (MQ=255)                                                                                                          tcgcatttacccacagagcctcacaccttgcattagcaggtcaGGCCTCTTCGCGGGCACGCCCGCTCCCACAgg                                                                                                           <  1:5610‑M1/32‑1 (MQ=255)                                                                                                          tcgcatttacccacagagcctcacaccttgcattagcaggtcaGGCCTCTTCGCGGGCACGCCCGCTCCCACAgg                                                                                                           >  2:5610‑M1/44‑75 (MQ=255)                                                                                                          gTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATg                                >  2:460374/1‑150 (MQ=255)                                                                                                             ggCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCaa                             <  1:136770/150‑1 (MQ=255)                                                                                                               cATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAgg                           >  1:371549/1‑150 (MQ=255)                                                                                                                     cacagagcctcacaccttgcattagcaggtcaGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTgg                                                                      <  2:112673‑M1/69‑1 (MQ=255)                                                                                                                     cacagagcctcacaccttgcattagcaggtcaGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTgg                                                                      >  1:112673‑M1/33‑101 (MQ=255)                                                                                                                              cTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACcctgtgggagc                                                                  >  1:294377‑M2/1‑85 (MQ=255)                                                                                                                              cTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACcctgtgggagc                                                                  <  2:294377‑M2/96‑12 (MQ=255)                                                                                                                                ggATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGt          <  1:407610/150‑1 (MQ=255)                                                                                                                                    tCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAAt      <  1:460374/150‑1 (MQ=255)                                                                                                                                        ggTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGa  <  2:371549/150‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                         TCCTGGCAGGGGATGCCGGGTTCGATGCGGAACAGCGGGTGAGTGTTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGA  >  NC_002947/1419405‑1419689

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.