New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	6006595 =	24 (0.910)	10 (0.510)	5/202	1.9	51.7%	intergenic (+7/+92)	ydcJ/PP_5261	metalloprotein/LysR family transcriptional regulator
	?	NC_002947	6006679 =	1 (0.050)					intergenic (+91/+8)	ydcJ/PP_5261	metalloprotein/LysR family transcriptional regulator

TCTTCGCGGGCTCGCCCGCTCCCACAGGTACAGGGCATACGACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCTCGCCGCCTCGCCGGGTGCGCGGCCACACCAGGTAGTAATCCATGCCGCTGGGCA  >  NC_002947/6006602‑6006826                                                                              |                                                                                                                                                    TCTTCGCGGGCTCGCCCGCTCCCACAGGTACAGGGCATACGACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGTGGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACg                                                                             <  1:361162‑M1/150‑1 (MQ=255) TCTTCGCGGGCTCGCCCGCTCCCACAGGTACAGGGCATACGACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACg                                                                             <  2:408505‑M1/150‑1 (MQ=255)   TTCGCGGGCTCGCCCGCTCCCACAGGTACAGGGCATACGACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCCCCTCGCCTTCCAGGAACGCa                                                                           <  2:490519‑M1/150‑1 (MQ=255)      GCGGGCTCGCCCGCTCCCACAGGTACAGGGCATACGACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCAATGCCGCCACCTCGCCTTCCAGGGACGGACTc                                                                        <  1:295263‑M1/150‑1 (MQ=255)                ccgctcccacaggtcgtatgccctgtacctgtgggagcgggcgagcccgcgaagaggccggtGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAg                                                                                  <  2:620310‑M2/68‑1 (MQ=255)                ccgctcccacaggtcgtatgccctgtacctgtgggagcgggcgagcccgcgaagaggccggtGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAg                                                                                  >  1:620310‑M2/63‑130 (MQ=255)                ccgctcccacaggtcgtatgccctgtacctgtgggagcgggcgagcccgcgaagaggccggtGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCa                                                              >  2:3180‑M2/63‑150 (MQ=255)                ccgctcccacaggtcgtatgccctgtacctgtgggagcgggcgagcccgcgaagaggccggtGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGACAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCa                                                              >  1:300699‑M2/63‑150 (MQ=255)                    TCCCACAGGTACAGGGCATACGACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGACGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCg                                                          <  1:535893‑M1/150‑1 (MQ=255)                      ccacaggtcgtatgccctgtacctgtgggagcgggcgagcccgcgaagaggccggtGCAGGTGATCAAAGACGCGGCAGGATTTc                                                                                                                         >  1:76001‑M2/57‑85 (MQ=255)                      ccacaggtcgtatgccctgtacctgtgggagcgggcgagcccgcgaagaggccggtGCAGGTGATCAAAGACGCGGCAGGATTTc                                                                                                                         <  2:76001‑M2/29‑1 (MQ=255)                      ccacaggtcgtatgccctgtacctgtgggagcgggcgagcccgcgaagaggccggtGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCt                                                        >  2:175371‑M2/57‑150 (MQ=255)                      ccacaggtcgtatgccctgtacctgtgggagcgggcgagcccgcgaagaggccggtGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCt                                                        >  1:528981‑M2/57‑150 (MQ=255)                      ccacaggtcgtatgccctgtacctgtgggagcgggcgagcccgcgaagaggccggtACAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCAt                                                                                                       <  2:343907‑M2/47‑1 (MQ=255)                      ccacaggtcgtatgccctgtacctgtgggagcgggcgagcccgcgaagaggccggtACAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCAt                                                                                                       >  1:343907‑M2/57‑103 (MQ=255)                            GTACAGGGCATACGACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCTcgccgc                                                  <  1:293252‑M1/150‑1 (MQ=255)                                  ggCATACGACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCTCGCCGCCTCGcc                                            >  2:247519/1‑150 (MQ=255)                                             tgtgggagcgggcgagcccgcgaagaggccggtGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAAACCATTGCCGCCACCTCGCCTTCCACGAACGCACTCAACCGCCGCAACCGCTCGCCGCCTCGCCGCGTGCGCGGc                                 <  1:610855‑M2/117‑1 (MQ=255)                                                             cccgcgaagaggccggtGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCTCGCCGCCTCGCCGGGTGCGCGGCCACACCAGGTAGTAAt                 <  2:528981‑M2/133‑1 (MQ=255)                                                              ccgcgaagaggccggtGCAGGTGATCAAAGCCGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCCCCTCGCCTTCCAGGAACGCACTCAACCGCCGCAAcc                                                           <  1:170794‑M2/91‑1 (MQ=255)                                                              ccgcgaagaggccggtGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAAcc                                                           >  2:170794‑M2/17‑107 (MQ=255)                                                                  gAAGAGGCCGGTGCAGGTGATCAAACACCCAGCAGGATTTCCACACCCGGCAAATCCATTGCCGCCACCTCGCCTTTACGGAACGCACTCAACCGAAGCCAGCGCGCGCGACCCCCCCGGGTGCGCGGCCACACCAGGTAGTAATCCATg            <  1:272410/150‑1 (MQ=255)                                                                           ggtGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCTCGCCGCCTCGCCGGGTGCGCGGCCACACCAGGTAGTAATCCATGCCGCTGGGc   <  2:293252‑M2/147‑1 (MQ=255)                                                                            gtGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCTCGCCGCCTCGCCGGGTGCGCGGCCACACCAGGTAGTAATCCATGCCGCTGGGCa  <  1:175371‑M2/148‑1 (MQ=255)                                                                              |                                                                                                                                                    TCTTCGCGGGCTCGCCCGCTCCCACAGGTACAGGGCATACGACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCTCGCCGCCTCGCCGGGTGCGCGGCCACACCAGGTAGTAATCCATGCCGCTGGGCA  >  NC_002947/6006602‑6006826

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.