New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1356014 =	25 (0.950)	6 (0.240)	6/264	2.3	21.0%	intergenic (+275/‑117)	PP_1180/PP_1181	hypothetical protein/two‑component system response regulator
	?	NC_002947	1356073 =	21 (0.820)					intergenic (+334/‑58)	PP_1180/PP_1181	hypothetical protein/two‑component system response regulator

CCCTTGGGCAGTTTTTTTTGGGCGCGAAGCCTGTCACAAAAAACGGTTCAGTCGAGGGGGCGGTAGGGCGTGTCTGAAGATCTGGGGTGCCTGGGAGATCGAGCACCGCCCGCGGGGCGCTCGGTCTCGCAGGGCCCCCCATCTACATTCATACTCTCAGCTGCCCTGACACGATCCCAAGAACAACAAGGCCAAAGCCATGGACCACCCCATACCCCGCATCCTCATCGTCGAAGACGACCAGCGCCTCGCCGAACTCACCGCCGAATACCTGCAGGCCAATGGTTTC  >  NC_002947/1355932‑1356220                                                                                                                                              |                                                                                                                                                    cccTTGGGCAGTTTTTTTTGGGCGCGAAGCCTGTCACAAAAAACGGTTCAGTCGAGGGGGCGGTAGGGCGTGTCTGAAGATCTGGGGTGCCTGGGAGATCGAGCACCGCCCGCGGGGCGCTCGGTCTCGCAGGGCCCCCCATCTACATTc                                                                                                                                             >  1:542874/1‑150 (MQ=255)        gCAGTTTTTTTTGGGCGCGAAGCCTGTCACAAAAAACGGTTCAGTCGAGGGGGCGGTAGGGCGTGTCTGAAGATCTGGGGTGCCTGGGAGATCGAGCACCGCCCGCGGGGCGCTCGGTCTCGCAGGGCCCCCCATCTACATTCATActct                                                                                                                                      >  1:231561/1‑150 (MQ=255)         gtatggggtggtccatggctttggccttgttgttcttgggatcgtgtcagggcagctgagagtatgaatgtagaTGGGGTGCCTGGGAGATCGAGCACCGCCCGCGGGGCGCTCGGTCTCGCAGGGCCCCCCATCTACATTCATa                                                                                                                                          <  1:299915‑M1/71‑1 (MQ=255)         gtatggggtggtccatggctttggccttgttgttcttgggatcgtgtcagggcagctgagagtatgaatgtagaTGGGGTGCCTGGGAGATCGAGCACCGCCCGCGGGGCGCTCGGTCTCGCAGGGCCCCCCATCTACATTCATa                                                                                                                                          >  2:299915‑M1/75‑145 (MQ=255)                      gcgcGAAGCCTGTCACAAAAAACGGTTCAGTCGAGGGGGCGGTAGGGCGTGTCTGAAGATCTGGGGTGCCTGGGAGATCGAGCACCGCCCGCGGGGCGCTCGGTCTCGCAGGGCCCCCCATCTACATTCATACTCTCAGCTGCCCTGaca                                                                                                                        <  1:393625/150‑1 (MQ=255)                                tGTCACAAAAAACGGTTCAGTCGAGGGGGCGGTAGGGCGTGTCTGAAGATCTGGGGTGCCTGGGAGATCGAGCACCGCCCGCGGGGCGCTCGGTCTCGCAGGGCCCCCCATCTACATTCATACTCTCAGCTGCCCTGACACGATCCCAAg                                                                                                              >  1:620026/1‑150 (MQ=255)                                    acaAAAAACGGTTCAGTCGAGGGGGCGGTAGGGCGTGTCTGAAGATCTGGGGTGCCTGGGAGATCGAGCACCGCCCGCGGGGCGCTCGGTCTCGCGGGCCTGACGATCAACATTCATACTCTCAGCTGCCCTGACACGATCCCAAGaaca                                                                                                          >  2:179578/1‑150 (MQ=255)                                    acaAAAAACGGTTCAGTCGAGGGGGCGGTAGGGCGTGTCTGAAGATCTGGGGTGCCTGGGAGATCGAGCACCGCCCGCGGGGCGCTCGGTCTCGCAGGGCCCCCCATCTACATTCATACTCTCAGCTGCCCTGACACGATCCCAAGaaca                                                                                                          >  1:246162/1‑150 (MQ=255)                                      aaaaaaCGGTTCAGTCGAGGGGGCGGTAGGGCGTGTCTGAAGATCTGGGGTGCCTGGGAGATCGAGCACCGCCCGCGGGGCGCTCGGTCTCGCAGGGCCCCCCATCTACATTCATACTCTCAGCTGCCCTGACACGATCCCAAGaacaac                                                                                                        >  2:535615/1‑150 (MQ=255)                                          aaCGGTTCAGTCGAGGGGGCGGTAGGGCGTCACTGAATATGTGGGGTGCCTGGGAGATCGAGCACCGCCCGCGGGGCGCTCGGTCTCGCAGGGCCCCCCATCTACATTCATACTCTCAGCTGCCCTGACACGATCCCAAGAACAACAAgg                                                                                                    >  1:604999/1‑150 (MQ=255)                                                   gTCGAGGGGGCGGTAGGGCGTGTCTGAAGATCTGGGGTGCCTGGGAGATCGAGCACCGCCCGCGGGGCGCTCGGTCTCGCAGGGCCCCCCATCTACATTCATACTCTCAGCTGCCCTGACACGATCCCAAGAACAACAAGGCCAAAGCCa                                                                                           <  2:236391/150‑1 (MQ=255)                                                                       tatgaatgtagatggggggccctgcgagaccgagcgccccgcgggcggtgctcgatctcccaggcaccccaTCTACATTCATACTCTCAGCTGCCCTGACACGATCCCAAGAACAACAAGGCCAAAGCCATGGACCACCCCATAc                                                                            <  1:299915‑M2/74‑1 (MQ=255)                                                                       tatgaatgtagatggggggccctgcgagaccgagcgccccgcgggcggtgctcgatctcccaggcaccccaTCTACATTCATACTCTCAGCTGCCCTGACACGATCCCAAGAACAACAAGGCCAAAGCCATGGACCACCCCATAc                                                                            >  2:299915‑M2/72‑145 (MQ=255)                                                                            gAAGATCTGGGGTGCCTGGGAGATCGAGCACCGCCCGCGGGGCGCTCGGTCTCGCAGGGCCCCCCATCTACATTCATACTCTCAGCTGCCCTGACACGATCCCAAGAACAACAAGGCCAAAGCCATGGACCACCCCATACCCCGCATc                                                                    <  2:29647/148‑1 (MQ=255)                                                                            gAAGATCTGGGGTGCCTGGGAGATCGAGCACCGCCCGCGGGGCGCTCGGTCTCGCAGGGCCCCCCATCTACATTCATACTCTCAGCTGCCCTGACACGATCCCAAGAACAACAAGGCCAAAGCCATGGACCACCCCATACCCCGCATc                                                                    >  1:29647/1‑148 (MQ=255)                                                                            atgtagatggggggccctgcgagaccgagcgccccgcgggcggtgctcgatctcccaggcaccccaTCTACAt                                                                                                                                               <  2:11493‑M2/7‑1 (MQ=255)                                                                            atgtagatgggcggccctgcgagaccgagcgccccgcgggcggtgctcgatctcccaggcaccccaTCTatat                                                                                                                                               >  1:11493‑M2/67‑73 (MQ=255)                                                                            atgtagaTGGGGTGCCTGGGAGATCGAGCACCGCCCGCGGGGCGCTCGGTCTCGCAGGGCCCCCCATCTACAt                                                                                                                                               <  2:11493‑M1/66‑1 (MQ=255)                                                                            atatagaTGGGGTGCCTGGGAGATCGAGCACCGCCCGCGGGGCGCTCGGTCTCGCAGGGCCGCCCATCTACAt                                                                                                                                               >  1:11493‑M1/8‑73 (MQ=255)                                                                                aTCTGGGGTGCCTGGGAGATCGAGCACCGCCCGCGGGGCGCTCGGTCTCGCAGGGCCCCCCATCTACATTCATACTCTCAGCTGCCCTGACACGATCCCAAGAACAACAAGGCCAAAGGCCTTAACCACCCCATACCCCGCATCCTCAtc                                                              <  1:179578/150‑1 (MQ=255)                                                                                aTCTGGGGTGCCTGGGAGATCGAGCACCGCCCGCGGGGCGCTCGGTCTCGCAGGGCCCCCCATCTACATTCATACTCTCAGCTGCCCTGACACGATCCCAAGAACAACAAGGCCAAAGCCATGGACCACCCCATACCCCGCATCCTCAtc                                                              <  2:231561/150‑1 (MQ=255)                                                                                aTCTGGGGTGCCTGGGAGATCGAGCACCGCCCGCGGGGCGCTCGGTCTCGCAGGGCCCCCCATCTACATTCATACTCTCAGCTGCCCTGACACGATCCCAAGAACAACAAGGCCAAAGCCATGGACCACCCCATACCCCGCATCCTCAtc                                                              >  2:470412/1‑150 (MQ=255)                                                                                      ggggccctgcgagaccgagcgccccgcgggcggtgctcgatctcccaggcaccccaTCTACATTCATACTCTCAGCTGCCCTGACACGATCCCAAGAACAACAAGGCCAAAGCCATGGACCACCCCATACCCCGCATCCTCATCGTCGaa                                                        >  1:484918‑M2/57‑150 (MQ=255)                                                                                            tGGGAGATCGAGCACCGCCCGCGGGGCGCTCGGTCTCGCAGGGCCCCCCATCTACATTCATACTCTCAGCTGCCCTGACACGATCCCAAGAACAACAAGGCCAAAGCCATGGACCACCCCATACCCCGCATCCTCATCGTCGAAgacgac                                                  >  2:580050/1‑150 (MQ=255)                                                                                                                  ggggCGCTCGGTCTCGCAGGGCCCCCCATCTACATTCATACTCTCAGCTGCCCTGACACGATCCCAAGAACAACAAGGCCAAAGCCATGGACCACCCCATACCCCGCATCCTCATCGTCGAAGACGACCAGCGCCTCGCCGAACTCAccg                            >  1:547724/1‑150 (MQ=255)                                                                                                                         tCGGTCTCGCAGGGCCCCCCATCTACATTCATACTCTCAGCTGCCCTGACACGATCCCAAGAACAACAAGGCCAAAGCCATGGACCACCCCATACCCCGCATCCTCATCGTCGAAGACGACCAGCGCCTCGCCGAACTCACCGCCGAATa                     >  1:428625/1‑150 (MQ=255)                                                                                                                            gatctcccaggcaccccaTCTACATTCATACTCTCAGCTGCCCTGACACGATCCCAAGAACAACAAGGCCAAAGCCATGGACCACCCCATACCCCGCATCCTCATCGTCGAAGACGACCAGCGCCTCGCCGAACTCACCGCCGAATACCt                  <  2:484918‑M2/132‑1 (MQ=255)                                                                                                                            gTCTCGCAGGGCCCCCCATCTACATTCATACTCTCAGCTGCCCTGACACGATCCCAAGAACAACAAGGCCAAAGCCATGGACCACCCCATACCCCGCATCCTCATCGTCGAAGACGACCAGCGCCTCGCCGAACTCACCGCCGAATACCt                  <  1:580050/150‑1 (MQ=255)                                                                                                                               tcGCAGGGCCCCCCATCTACATTCATACTCTCAGCTGCCCTGACACGATCCCAAGAACAACAAGGCCAAAGCCATGGACCACCCCATACCCCGCATCCTCATCGTCGAAGACGACCAGCGCCTCGCCGAACTCACCGCCGAATACCTGCa               >  1:308730/1‑150 (MQ=255)                                                                                                                                cGCAGGGCCCCCCATCTACATTCATACTCTCAGCTGCCCTGACACGATCCCAAGAACAACAAGGCCAAAGCCATGGACCACCCCATACCCCGCATCCTCATCGTCGAAGACGACCAGCGCCTCGCCGAACTCACCGCCGAATACCTGCAg              <  1:470412/150‑1 (MQ=255)                                                                                                                                cGCAGGGCCCCCCATCTACATTCATACTCTCAGCTGCCCTGACACGATCCCAAGAACAACAAGGCCAAAGCCATGGACCACCCCATACCCCGCATCCTCATCGTCGAAGACGACCAGCGCCTCGCCGAACTCACCGCCGAATACCTGCAg              <  2:542874/150‑1 (MQ=255)                                                                                                                                            caTCTACATTCATACACTCCTCTGCCCTTACACGATCCCAAGAACAACAAGGCCAAAGCCATGGACCACCCCATACCCCGCATCCTCATCGTCGAAGACGACCAGCGCCTCGCCGAACTCACCGCCGAATACCTGCAGGCCAATGGTTTc  <  2:308730‑M2/148‑1 (MQ=255)                                                                                                                                              |                                                                                                                                                    CCCTTGGGCAGTTTTTTTTGGGCGCGAAGCCTGTCACAAAAAACGGTTCAGTCGAGGGGGCGGTAGGGCGTGTCTGAAGATCTGGGGTGCCTGGGAGATCGAGCACCGCCCGCGGGGCGCTCGGTCTCGCAGGGCCCCCCATCTACATTCATACTCTCAGCTGCCCTGACACGATCCCAAGAACAACAAGGCCAAAGCCATGGACCACCCCATACCCCGCATCCTCATCGTCGAAGACGACCAGCGCCTCGCCGAACTCACCGCCGAATACCTGCAGGCCAATGGTTTC  >  NC_002947/1355932‑1356220

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.