| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 2,523,097 | Δ1 bp | 8.6% | coding (4305/4446 nt) | PP_2212 → | leucine‑rich repeat‑containing protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 2,523,097 | 0 | G | . | 8.6% | 366.3 / 29.2 | 116 | coding (4305/4446 nt) | PP_2212 | leucine‑rich repeat‑containing protein |
| Reads supporting (aligned to +/- strand): ref base G (50/56); new base . (5/5); total (55/61) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.25e-01 | |||||||||||
Only 100 of 117 total aligned reads displayed.
CGGGTTACGCGCGCGCAGACCATCGAGGGCCTGACCGATAGCCTGAGCCAGCGCGCGTTCTGGCGCCGTTACCTGCGCCAGCAACATGACCAAATGTTCGATGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAG‑CTGCAGGCTCAACGTCCTGTCTTGGCGCCGGCGGCCTTCGAGCAGCAACTACGCCGGCTACAGGAACAGCAGGACCTCGATATCGAGCGCCTGGTCGCAGGGCTCACCCAGTCCTACCTGCGTGCAGCCGAGCGCGCAGAGGGGTGATTAGCGGC > NC_002947/2522954‑2523246 | cGGGTTACGCGCGCGCAGACCATCGAGGGCCTGACCGATAGCCTGAGCCAGCGCGCGTTCTGGCGCCGTTACCTGCGCCAGCAACATGACCAAATGTTCGATGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAGCCTGCA‑GCTCaa < 1:1018893/150‑1 (MQ=255) aCGCGCGCGCAGACCATCGAGGGCCTGACCGATAGCCTGAGCCAGCGCGCGTTCTGGCGCCGTTACCTGCGCCAGCAACATGACCAAATGTTCGATGTCCTCAGTGCGGATTACACTCGGCGCACGCTTGAG‑CTGCAGGCTCAACGTCCt < 1:772762/150‑1 (MQ=255) gaaGACCATAGAGGGCCTGACCGATAGCCTGAGCCAGCGCGCGTTCTGGCGCCGTTACCTGCGCCAGCAACCTGACCAAATGTTCGATGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAG‑CTGCAGGCTCAACGTCCTGTCTTGgc > 2:761055/3‑150 (MQ=255) gACCATCGAGGGCCTGACCGATAGCCTGAGCCAGCGCGCGTTCTGGCGCCGTTACCTGCGCCAGCAACATGACCAAATGTTCGATGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAG‑CTGCAGGCTCAACGTCCTGTCTTGGCGcc > 2:1441391/1‑150 (MQ=255) cATCGAGGGCCTGACCGATAGCCTGAGCCAGCGCGCGTTCTGGCGCCGTTACCTGCGCCAGCAACATGACCAAATGTTCGATGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAG‑CTGCAGGCTCAACGTCCTGTCTTGGCGCcggc > 2:897166/1‑150 (MQ=255) aTCGAGGGCCTGACCGATAGCCTGAGCCAGCGCGCGTTCTGGCGCCGTTACCTGCGCCGGCAACATGACCAAATGTTCGATGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAG‑CTGCAGGCTCAACGTCCTGTCTTGGCGCcggcg > 2:678151/1‑150 (MQ=255) aTCGAGGGCCTGACCGATAGCCTGAGCCAGCGCGCGTTCTGGCGCCGTTACCTGCGCCAGCAACATGACCAAATGTTCGATGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAG‑CTGCAGGCTCAACGTCCTGTCTTGGCGCcggcg > 1:1789360/1‑150 (MQ=255) cGAGGGCCTGACCGATAGCCTGAGCCAGCGCGCGTTCTGGCGCCGTTACCTGCGCCAGCAACATGACCAAATGTTCGATGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAG‑CTGCAGGCTCAACGTCCTGTCTTg < 2:1636366/139‑1 (MQ=255) gAGGGCCTGACCGATAGCCTGAGCCAGCGCGCGTTCTGGCGCCGTTACCTGCGCCAGCAACATGACCAAATGTTCGATGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAG‑CTGCAGGCTCAACGTCCt < 1:101855/132‑1 (MQ=255) gAGGGCCTGACCGATACCCTGAGCCAGCGCGCGTTCTGGCGCCGTTACCTGCGCCAGCAACATGACCAAATGTTCGATGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAG‑CTGCAGGCTCAACGTCCt > 2:101855/1‑132 (MQ=255) ggCCTGACCGATAGCCTGAGCCAGCGCGCGTTCTGGCGCCGTTACCTGCGCCAGCAACATGACCAAATGTAAGCCGCCGTCAGTGCGGATTACTTGCTGCGCACGCTTGAG‑CTGCAGGCTCAACGTCCTGTCTTGGCGCCGGCGGCCTTc < 1:1499366/150‑1 (MQ=255) ccTGACCGGTAGCCTGAGCCAGCGCGCGTTCTGGCGCCGTTACCTGCGCCAGCAACATGACCAAATGTTCGATGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAG‑CTGCAGGCTCAACGTCCTGTCTTGGCGCCGGCGGCCTTCGa < 2:373043/150‑1 (MQ=255) ccTGACCGATAGCCTGAGCCAGCGCGCGTTCTGGCGCCGTTACCTGCGCCAGCAACATGACCAAATGTTCGATGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAG‑CTGCAGGCTCAACGTCCTGTCTTGGCGCCGGCGGCCTTCGa > 1:2119158/1‑150 (MQ=255) cTGACCGATAGCCTGAGCCAGCGCGCGTTCTGGCGCCGTTACCTGCGCCAGCAACATGACCAAATGTTCGATGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAG‑CTGCAGGCTCAACGTCCTGTCTTGGCGCCGGCGGCCTTCGag > 1:1440440/1‑150 (MQ=255) cTGACCGATAGCCTGAGCCAGCGCGCGTTCTGGCGCCGTTACCTGCGCCAGCAACATGACCAAATGTTCGATGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAG‑CTGCAGGCTCAACGTCCTGTCTTGGCGCCGGCGGCCTTCGag < 1:1847869/150‑1 (MQ=255) gACCGATAGCCTGAGCCAGCGCGCGTTCTGGCGCCGTTACCTGCGCCAGCAACATGACCAAATGTTCGATGCCGTCAGTGCGGATTACACTCGGCGCACGCTTGAG‑CTGCAGGCTCAACGTCCTGTCTTGGCGCCGGCGGCCTTCGagca < 1:770822/150‑1 (MQ=255) gACCGATAGCCTGAGCCAGCGCGCGTTCTGGCGCCGTTACCTGCGCCAGCAACATGACCAAATGTTCGATGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAG‑CTGCAGGCTCAACGTCCTGTCTTGGCGCCGGCGGCCTTCGagca < 2:781661/150‑1 (MQ=255) ccGATAGCCTGAGCCAGCGCGCGTTCTGGCGCCGTTACCTGCGCCAGCAACATGACCAAATGTTCGATGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAG‑CTGCAGGCTCAACGTCCTGTCTTGGCGCCGGCGGCCTTCGagcagc < 1:1858582/150‑1 (MQ=255) cGATAGCCTGAGCCAGCGCGCGTTCTGGCGCCGTTACCTGCGCCAGCAACATGACCAAATGTTCGATGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAG‑CTGCAGGCTCAACGTCCTGTCTTGgc > 1:964512/1‑129 (MQ=255) ccTGAGCCAGCGCGCGTTCTGGCGCCGTTACCTGCGCCAGCAACATGACCAAATGTTCGATGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAGCCTGCA‑GCTCaagc > 1:1274679/1‑109 (MQ=255) ccTGAGCCAGCGCGCGTTCTGGCGCCGTTACCTGCGCCAGCAACATGACCAAATGTTCGATGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAGCCTGCA‑GCTCaagc < 2:1274679/111‑3 (MQ=255) tGAGCCAGCGCGCGTTCTGGCGCCGTTACCTGCGCCAGCAACATGACCAAATGTTCGATGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAGCCTGCA‑GCTCaagc < 1:2015943/109‑3 (MQ=255) tGAGCCAGCGCGCGTTCTGGCGCCGTTACCTGCGCCAGCAACATGACCAAATGTTCGATGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAGCCTGCA‑GCTCaagc > 2:2015943/1‑107 (MQ=255) tGAGCCAGCGCGCGTTCTGGCGCCGTTACCTGCGCCAGCAACATGACCAAATGTTCGATGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAG‑CTGCAGGCTCAACGTCCTGTCTTGGCGCCGGCGGCCTTCGAGCAGCAACTACGcc > 1:1368517/1‑150 (MQ=255) aGCCAGCGCGCGTTCTGGCGCCGTTACCTGCGCCAGCAACATGACCAAATGTTCGATGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAG‑CTGCAGGCTCAACGTCCTGTCTTGGCGCCGGCGGCCTTCGAGCAGCAACTACGCCgc < 1:1158297/150‑2 (MQ=255) gCCAGCGCGCGTTCTGGCGCCGTTACCTGCGCCAGCAACATGACCAAATGTTCGATGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAG‑CTGCAGGCTCAACGTCCTGTCTTGGCGCCGGCGGCCTTCGAGCAGCAACTACGCCGGc > 2:889159/1‑150 (MQ=255) cAGCGCGCGTTCTGGCGCCGTTACCTGCGCCAGCAACATGACCAAATGTTCGATGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAGCCTGCA‑GCTCaag > 1:2106321/1‑102 (MQ=255) cAGCGCGCGTTCTGGCGCCGTTACCTGCGCCAGCAACATGACCAAATGTTCGATGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAGCCTGCA‑GCTCaag < 2:2106321/103‑2 (MQ=255) cAGCGCGCGTTCTGGCGCCGTTACCTGCGCCAGCAACATGACCAAATGTTCGATGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAG‑CTGCAGGCTCAACGTCCTGTCTTg < 2:2172962/114‑1 (MQ=255) cAGCGCGCGTTCTGGCGCCGTTACCTGCGCCAGCAACATGACCAAATGTTCGATGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAG‑CTGCAGGCTCAACGTCCTGTCTTg > 1:2172962/1‑114 (MQ=255) gcgcgcGTTCTGGCGCCGTTACCTGCGCCAGCAACATGACCAAATGTTCGATGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAG‑CTGCAGGCTCAACGTCCTGTCTTGGCGCCGGCGGCCt > 2:2191631/1‑125 (MQ=255) gcgcgcGTTCTGGCGCCGTTACCTGCGCCAGCAACATGACCAAATGTTCGATGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAG‑CTGCAGGCTCAACGTCCTGTCTTGGCGCCGGCGGCCt < 1:2191631/125‑1 (MQ=255) ggcgcgTTCTGGCGGCGTTACCTGCGCCAGCAACATGACCAAATGTTCGATGCCCTCAGTGCGGATTACCCTCGGCGCACGCTTGAG‑CTGCAGGCTCAACGTCCTGTCTTGGCGCCGGCGGCCTTCGAGCAGCAACTACGCCGGCTACAg < 2:355051/149‑1 (MQ=255) cgcgcgTTCTGGCGCCGTTACCTTCGCCAGCAACATGACCAAATGTTCGATGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAG‑CTGCAGGCTCAACGTCCTGTCTTGGCGCCGGCGGCCTTCGAGCAGCAACTACGCCGGCTACAg < 2:1184537/150‑1 (MQ=255) cgcgcgTTCTGGCGCCGTTACCTGCGCCAGCAACATGACCAAATGTTCGATGCCCTCAGTGCGGATTACACTCGGCGGACGCTTGAG‑CTGCAGGCTCAACGTCCTGTCTTGGCGCCGGCGGCCTTCGAGCAGCAACTACGCCGGCTACAg < 2:82877/150‑1 (MQ=255) cgcgcgTTCTGGCGCCGTTACCTGCGCCAGCAACATGACCAAATGTTCGATGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAG‑CTGCAGGCTCAACGTCCTGTCTTGGCGCCGGCGGCCTTCGAGCAGCAACTACGCCGGCTACAg < 2:1366476/150‑1 (MQ=255) gcgTTCTGGCGCCGTTACCTGCGCCAGCAACATGACCAAATGTTCGATGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAG‑CTGCAGGCTCAACGTCCTGTCTTGGCGCCGGCGGCCTTCGAGCAGCAACTACGCCGGCTACAGGaa < 2:135577/150‑1 (MQ=255) gcgTTCTGGCGCCGTTACCTGCGCCAGCAACATGACCAAATGTTCGATGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAG‑CTGCAGGCTCAACGTCCTGTCTTGGCGCCGGCGGCCTTCGAGCAGCAACTACGCCGGCTACAGGaa < 2:1639931/150‑1 (MQ=255) gTTCTGGCGCCGTTACCTGCGCCAGCAACATGACCAAATGTTCGATGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAG‑CTGCAGGCTCAACGTCCTGTCTTGGCGCCGGCGGCCTTCGAGCAGCAACTACGCCGGCTACAGGAAca > 2:1899022/1‑150 (MQ=255) tCTGGCGCCGTTACCTGCGCCAGCAACATGACCAAATGTTCGATGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAG‑CTGCAGGCTCAACGTCCTGTCTTGGCGCCGGCGGCCTTCGAGCAGCAACTACGCCGGCTACAGGAAcagc < 2:1571994/150‑1 (MQ=255) cTGGCGCCGTTACCTGCGCCAGCAACATGACCAAATGTTCGATGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAG‑CTGCAGGCTCAACGTCCTGTCTTGGCGCCGGCGGCCTTCGAGCAGCAACTACGCCGGCTACAGGAAcagca < 1:312043/150‑1 (MQ=255) tGGCGCCGTTACCTGCGCCAGCAACATGACCAAATGTTCGATGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAG‑CTGCAGGCTCAACGTCCTGTCTTGGCGCCGGCGGCCTTCGAGCAGCAACTACGCCGGCTACAGGAAcagcag < 2:407065/150‑1 (MQ=255) tGGCGCAGGTAACGGCGCCAGCAACATGACCAAATGTTCGATGCCATCAGTGCGGATTACACTCGGCGCACACTTGAG‑CTGCAGGCTCAACGTCCTGTCTTGGCGCCGGCGGCCTTCGAGCAGCAACTACGCCGGCTACAGGAAcagcag > 2:275197/1‑150 (MQ=255) ccTGCGCCAGCAACATGACCAAATGTTCGATGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAG‑CTGCAGGCTCAACGTCCTGTCTTGGCGCCGGCGGCCTTCGAGCAGCAACTACGCCGGCTACAGGAACAGCAGGACCTCGatat > 2:1080323/1‑150 (MQ=255) cTGCGCCAGCAACATGACCAAATGTTCGATGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAGCCTGCA‑GCTCaagc < 1:1347135/80‑3 (MQ=255) cTGCGCCAGCAACATGACCAAATGTTCGATGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAGCCTGCA‑GCTCaagc > 2:1347135/1‑78 (MQ=255) tGCGCCAGCAACATGACCAAATGTTCGATGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAG‑CTGCAGGCTCAACGTCCTGTCTTGGCGCCGGCGGCCTTCGAGCAGCAACTACGCCGGCTACAGGAAcagcag > 1:66033/1‑137 (MQ=255) tGCGCCAGCAACATGACCAAATGTTCGATGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAG‑CTGCAGGCTCAACGTCCTGTCTTGGCGCCGGCGGCCTTCGAGCAGCAACTACGCCGGCTACAGGAAcagcag < 2:66033/137‑1 (MQ=255) tGCGCCAGCAACATGACCAAATGTTCGATGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAG‑CTGCAGGCTCAACGTCCTGTCTTGGCGCCGGCGGCCTTCGAGCAGCAACTACGCCGGCTACAGGAACAGCAGGACCTCGATATCg > 2:1354724/1‑150 (MQ=255) gcCAGCAACATGACCAAATGTTCGATGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAG‑CTGCAGGCTCAACGTCCTGTCTTGGCGCCGGCGGCCTTCGAGCAGCAACTACGCCGGCTACAGGAACAGCAGGACCTCGATATCGAgc < 1:640638/150‑1 (MQ=255) cAACATGACCAAATGTTCGATGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAG‑CTGCAGGCTCAACGTCCTGTCTTGGCGCCGGCGGCCTTCGAGCAGCAACTACGCCGGCTACAGGAACAGCAGGACCTCGATATCGAGCGCCTg < 1:897166/150‑1 (MQ=255) aCCAAATGTTCGATGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAG‑CTGCAGGCTCAACGTCCTGTCTTGGCGCCGGCGGCCTTCGAGCAGCAACTACGCCGGCTACAGGAACAGCAGGACCTCGATATCGAGCGCCTGGTCGCAg < 2:1357280/150‑1 (MQ=255) aCCAAATGTTCGATGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAG‑CTGCAGGCTCAACGTCCTGTCTTGGCGCCGGCGGCCTTCGAGCAGCAACTACGCCGGCTACAGGAACAGCAGGACCTCGATATCGAGCGCCTGGTCGCAg < 2:223386/150‑1 (MQ=255) ccAAATGTTCGATGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAG‑CTGCAGGCTCAACGTCCTGTCTTGGCGCCGGCGGCCTTCGAGCAGCAACTACGCCGGCTACAGGAAca < 1:803826/117‑1 (MQ=255) ccAAATGTTCGATGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAG‑CTGCAGGCTCAACGTCCTGTCTTGGCGCCGGCGGCCTTCGAGCAGCAACTACGCCGGCTACAGGAAca > 2:803826/1‑117 (MQ=255) ccAAATGTTCGATGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAG‑CTGCAGGCTCAACGTCCTGTCTTGGCGCCGGCGGCCTTCGAGCAGCAACTACGCCGGCTACAGGAACAGCAGGACCTCGat > 2:373756/1‑130 (MQ=255) ccAAATGTTCGATGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAG‑CTGCAGGCTCAACGTCCTGTCTTGGCGCCGGCGGCCTTCGAGCAGCAACTACGCCGGCTACAGGAACAGCAGGACCTCGat < 1:373756/130‑1 (MQ=255) ccAAATGTTCGATGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAG‑CTGCAGGCTCAACGTCCTGTCTTGGCGCCGGCGGCCTTCGAGCAGCAACTACGCCGGCTACAGGAACAGCAGGACCTCGATATCGAGCGCCTGGTCGCAgg < 1:1441391/150‑1 (MQ=255) ccAAATGTTCGATGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAG‑CTGCAGGCTCAACGTCCTGTCTTGGCGCCGGCGGCCTTCGAGCAGCAACTACGCCGGCTACAGGAACAGCAGGACCTCGATATCGAGCGCCTGGTCGCAgg > 1:730501/1‑150 (MQ=255) cAAATGTTCGATGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAG‑CTGCAGGCTCAAc < 1:1328410/61‑1 (MQ=255) cAAATGTTCGATGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAG‑CTGCAGGCTCAACGTCCTGt > 2:1327218/1‑68 (MQ=255) cAAATGTTCGATGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAG‑CTGCAGGCTCAACGTCCTGt < 1:1327218/68‑1 (MQ=255) cAAATGTTCGACGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAG‑CTGCAGGCTCAACGTCCTGTCtt > 2:864918/1‑71 (MQ=255) aaaTGTTCGATGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAG‑CTGCAGGCTCAACGTCCTGTCTTGGCGCCGGCGGCCTTCGAGCAGCAACTACGCCGGCTACAGGAACAGCAGGACCTCGATATCGAGCGCCTGGTCGCAGGGc > 1:1857782/1‑150 (MQ=255) ttCGATGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAG‑CTGCAGGCTCAACGTCCTGTCTTGGCGCCGGCGGCCTTCGAGCAGCAACTACGCCGGCTACAGGAACAGCAGGACCTCGATATCGAGCGCCTGGTCGCAGGGCTCAcc < 2:1368517/150‑1 (MQ=255) gATGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAG‑CTGCAGGCTCAACGTCCTGTCTTGGCGCCGGCGGCCTTCGAGCAGCAACTACGCCGGCTACAGGAACAGCAGGACCTCGATATCGa > 1:1159224/1‑125 (MQ=255) gATGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAG‑CTGCAGGCTCAACGTCCTGTCTTGGCGCCGGCGGCCTTCGAGCAGCAACTACGCCGGCTACAGGAACAGCAGGACCTCGATATCGa < 2:1159224/125‑1 (MQ=255) gATGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAG‑CTGCAGGCTCAACGTCCTGTCTTGGCGCCGGCGGCCTTCGAGCAGCAACTACGCCGGCTACAGGAACAGCAGGACCTCGATATCGAgcgc < 2:2148759/129‑1 (MQ=255) gATGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAG‑CTGCAGGCTCAACGTCCTGTCTTGGCGCCGGCGGCCTTCGAGCAGCAACTACGCCGGCTACAGGAACAGCAGGACCTCGATATCGAgcgc > 1:2148759/1‑129 (MQ=255) gATGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAG‑CTGCAGGCTCAACGTCCTGTCTTGGCGCCGGCGGCCTTCGAGCAGCAACTACGCCGGCTACAGGAACAGCAGGACCTCGATATCGAGCGCCTGGTCGCAGGGCTCACCCAg > 1:892640/1‑150 (MQ=255) gATGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAG‑CTGCAGGCTCAACGTCCTGTCTTGGCGCCGGCGGCCTTCGAGCAGCAACTACGCCGGCTACAGGAACAGCAGGACCTCGATATCGAGCGCCTGGTCGCAGGGCTCACCCAg < 2:1857782/150‑1 (MQ=255) gATGCCATCAGTGCGGATTACACTCGGCGCACGCTTGAG‑CTGCAGGCTCAACGTCCTGTCTTGGCGCCGGCGGCCTTCGAGCAGCAACTACGCCGGCTACAGGAACAGCAGGACCTCGATATCGAGCGCCTGGTCGCAGGGCTCACCCAg < 1:255998/150‑1 (MQ=255) cccTCAGTGCGGATTACACTCGGCGCACGCTTGAG‑CTGCAGGCTCAACGTCCTGTCTTGGCGCCGGCGGCCTTCGAGCAGCAACTACGCCGGCTACAGGAACAGCAGGACCTCGATATc < 1:2305056/119‑1 (MQ=255) cccTCAGTGCGGATTACACTCGGCGCACGCTTGAG‑CTGCAGGCTCAACGTCCTGTCTTGGCGCCGGCGGCCTTCGAGCAGCAACTACGCCGGCTACAGGAACAGCAGGACCTCGATATc > 2:2305056/1‑119 (MQ=255) cccTCAGTGCGGATTACACTCGGCGCACGCTTGAG‑CTGCAGGCTCAACGTCCTGTCTTGGCGCCGGCGGCCTTCGAGCAGCAACTACGCCGGCTACAGGAACAGCAGGACCTCGATATCGAGCGCCTGGTCGCAgg < 1:227212/136‑1 (MQ=255) cccTCAGTGCGGATTACACTCGGCGCACGCTTGAG‑CTGCAGGCTCAACGTCCTGTCTTGGCGCCGGCGGCCTTCGAGCAGCAACTACGCCGGCTACAGGAACAGCAGGACCTCGATATCGAGCGCCTGGTCGCAgg > 2:227212/1‑136 (MQ=255) ccTCAGTGCGGATTACACTCGGCGCACGCTTGAG‑CTGCAGGCTCAACGTCCTGTCTTGGCGCCGGCGGCCTTCGAGCAGCAACTACGCCGGCTACAGGAACAGCAGGACCTCGATATCGAGCGCCTGGTCGCAGGGCTCACCCAGTc > 2:1292150/1‑147 (MQ=255) ccTCAGTGCGGATTACACTCGGCGCACGCTTGAG‑CTGCAGGCTCAACGTCCTGTCTTGGCGCCGGCGGCCTTCGAGCAGCAACTACGCCGGCTACAGGAACAGCAGGACCTCGATATCGAGCGCCTGGTCGCAGGGCTCACCCAGTc < 1:1292150/147‑1 (MQ=255) cTCAGTGCGGATTACACTCGGCGCACGCTTGAG‑CTGCAGGCTCAACGTCCt < 2:1956271/51‑1 (MQ=255) gCGGATTACACTCGGCGCACGCTTGAG‑CTGCAGGCTCAACGTCCTGTCTTGGCGCCGGCGGCCTTCGAGCAGCAACTACGCCGGCTACAGGAACAGCAGGACCTCGATATCGAGCGCCTGGTCGCAGGGCTCACCCAGTCCTACCTGCGt < 1:569988/150‑1 (MQ=255) cGGATTACACTCGGCGCACGCTTGAG‑CTGCAGGCTCAACGTCCTGTCTTGGCGCCGGCGGCCTTCGAGCAGCAACTACGCCGGCTACAGGAACAGCAGGACCTCGATATCGAGCGCCTGGTCGCAGGGCTCACCCAGTCCTACCTGCGTg < 2:1924805/150‑1 (MQ=255) ttACACTCGGCGCACGCTTGAG‑CTGCAGGCTCAACGTCCTGTCTTGGCGCCGGCGGCCTTCGAGCAGCAACTACGCCGGCTACAGGAACAGCAGGACCTCGATATCGAGCGCCTGGTCGCAGGGCTCACCCAGTCCTACCTGCGt < 1:786964/145‑1 (MQ=255) ttACACTCGGCGCACGCTTGAG‑CTGCAGGCTCAACGTCCTGTCTTGGCGCCGGCGGCCTTCGAGCAGCAACTACGCCGGCTACAGGAACAGCAGGACCTCGATATCGAGCGCCTGGTCGCAGGGCTCACCCAGTCCTACCTGCGt > 2:786964/1‑145 (MQ=255) cacTCGGCGCACGCTTGAG‑CTGCAGGCTCAACGTCCTGTCTTGGCGCCGGCGGCCTTCGAGCAGCAACTACGCCGGCTACAGGAACAGCAGGACCTCGATATCGAGCGCCTGGTCGCAGGGCTCACCCAGTCCTACCTGCGTGCAGCCGa < 2:1602625/150‑1 (MQ=255) acTCGGCGCACGCTTGAG‑CTGCAGGCTCAACGTCCTGTCTTGGCGCCGGCGGCCTTCGAGCAGCAACTACGCTGGCTACAGGAACAGCAGGACCTCGATATCGAGCGCCTGGTCGCAGGGCTCACCCAGTCCTACCTGCGTGCAGCCGAg > 1:1496608/1‑150 (MQ=255) tCGGCGCACGCTTGAG‑CTGCAGGCTCAACGTCCTGTCTTGGCGCCGGCGGCCTTc < 1:78930/55‑1 (MQ=255) tCGGCGCACGCTTGAG‑CTGCAGGCTCAACGTCCTGTCTTGGCGCCGGCGGCCTTCGAGCAGCAACTACGCCGGCTACAGGAAcagcat > 1:598141/1‑87 (MQ=255) tCGGCGCACGCTTGAG‑CTGCAGGCTCAACGTCCTGTCTTGGCGCCGGCGGCCTTCGAGCAGCAACTACGCCGGCTACAGGAACAGCAGGACCTCGATATCGCGCGCCTGGTCGCAGGGCTCACCCAGTCCTACCTGCGTGCAGCCGAgcg > 1:1157780/1‑150 (MQ=255) tCGGCGCACGCTTGAG‑CTGCAGGCTCAACGTCCTGTCTTGGCGCCGGCGGCCTTCGAGCAGCAACTACGCCGGCTACAGGAACAGCAGGACCTCGATATCGAGCGCCTGGTCGCAGGGCTCACCCAGTCCTACCTGCGTGCAGCCGAgcg > 1:1838203/1‑150 (MQ=255) tCGGCGCACGCTTGAG‑CTGCAGGCTCAACGTCCTGTCTTGGCGCCGGCGGCCTTCGAGCAGCAACTACGCCGGCTACAGGAACAGCAGGACCTCGATATCGAGCGCCTGGTCGCAGGGCTCACCCAGTCCTACCTGCGTGCAGCCGAgcg > 2:1205994/1‑150 (MQ=255) ggCGCACGCTTGAG‑CTGCAGGCTCAACGTCCTGTCTTGGCGCCGGCGGCCTTCGAGCAGCAACTACGCCGGCTACAGGAACAGCAGGACCTCGATATCGAGCGCCTGGTCGCAGGGCTCACCCAGTCCTACCTGCGTGCAGCCGAgcgcg < 1:678151/150‑1 (MQ=255) gcACGCTTGAG‑CTGCAGGCTCAACGTCCTGTCTTGGCGCCGGCGGCCTTCGAGCAGCAACTACGCCGGCTACAGGAACAGCAGGACCTCGATATCGAGCGCCTGGTCGCAGGGCTCACCCAGTCCTACCTGCGTGCAGCCGAGCGCGCag > 1:49386/1‑150 (MQ=255) gacgttGAGCCTGCA‑GCTCAACGTCCTGTCTTGGCGCCGGCGGCCTTCGAGCAGCAACTACGCCGGCTACAGGAACAGCAGGACCTCGATATCGAGCGCCTGGTCGCAGGGCTCACCCAGTCCTACCTGCGTGCAGCCGAGCGCGCagag > 2:1603881/5‑150 (MQ=255) cGCTTGAG‑CTGCAGGCTCAACGTCCTGTCTTGGCGCCGGCGGCCTTCGAGCAGCAACTACGCCGGCTACAGGAACAGCAGGACCTCGATATCGACCGCCTGGTCGCAGGGCTCACCCAGTCCTACCTGCGTGCAGCCGAGCGCGCAGAgg < 1:1899022/150‑1 (MQ=255) gCTTGAG‑CTGCAGGCTCAACGTCCTGTCTTGGCGCCGGCGGCCTTCGAGCAGCAACTACGCCGGCTACAGGAAc > 2:767354/1‑74 (MQ=255) gCTTGAG‑CTGCAGGCTCAACGTCCTGTCTTGGCGCCGGCGGCCTTCGAGCAGCAACTACGCCGGCTACAGGAAc < 1:767354/74‑1 (MQ=255) ttGAG‑CTGCAGGCTCAACGTCCTGTCTTGGCGCCGGCGGCCTTCGAGCAGCAACTACGCCGGCTACAGGAACAGCAGGACCTCGATATCGAGCGCCTGGTCGCAGGGCTCACCCAGTCCTACCTGCGTGCAGCCGAGCGCGCAGAGGGGt > 1:1509655/1‑150 (MQ=255) gAG‑CTGCAGGCTCAACGTCCTGTCTTGGCGCCGGCGGCCTTCGAGCAGCAACTACGCCGGCTACAGGAACAGCAGGACCTCGATATCGAGCGCCTGGTCGCAGGGCTCACCCAGTCCTACCTGCGTGCAGCCGAGCGCGCACAGGGGTGa > 1:1108829/1‑150 (MQ=255) gggcggCAGGCTCAACGTCCTGTCTTGGCGCCGGCGGCTTTCGAGAAGCAACTACGCCGACTACAGGAACAGCGGGACCTCGATGTCGGGCGGCTGGTCGCTGGGCTCACGCAGTCCTACCCGCCTGCAGCCGTGCGCGCAGAGGTGTGa < 2:309983/145‑1 (MQ=255) ggCTCAACGTCCTGTCTTGGCGCCGGCGGCCTTCGAGCAGCAACTACGCCGGCTACAGGAACAGCCGCTTCGCGATATCGAGCGCCTGGTCGCAGGGCTCACCCAGTCCTACCTGCGTGCAGCCGAGCGCGCAGAGGGGTGATTAgcggc < 1:1354724/150‑1 (MQ=255) | CGGGTTACGCGCGCGCAGACCATCGAGGGCCTGACCGATAGCCTGAGCCAGCGCGCGTTCTGGCGCCGTTACCTGCGCCAGCAACATGACCAAATGTTCGATGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAG‑CTGCAGGCTCAACGTCCTGTCTTGGCGCCGGCGGCCTTCGAGCAGCAACTACGCCGGCTACAGGAACAGCAGGACCTCGATATCGAGCGCCTGGTCGCAGGGCTCACCCAGTCCTACCTGCGTGCAGCCGAGCGCGCAGAGGGGTGATTAGCGGC > NC_002947/2522954‑2523246 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |