| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 3,450,652 | Δ1 bp | 5.1% | intergenic (‑23/+360) | PP_5558 ← / ← PP_3069 | Xre family transcriptional regulator/outer membrane autotransporter |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 3,450,652 | 0 | A | . | 5.1% | 247.2 / 6.8 | 79 | intergenic (‑23/+360) | PP_5558/PP_3069 | Xre family transcriptional regulator/outer membrane autotransporter |
| Reads supporting (aligned to +/- strand): ref base A (36/39); new base . (2/2); total (38/41) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.90e-01 | |||||||||||
GTGAAGGCTCGCAGTGCTCTGAGCGGAAACCTAAAGGGAGGTCAGCGAAAAATTCTTCGATCTCTTTCGGGATGCCTTCTTCCATGGTCGGTGTCGGGAAGGTAATGATGTCGGCCGTCATGGTCACTACTCGCTATACTGT‑‑ATGCATGAACAGTATAGCGAGAAAGCCATCTTAAGCAATGTATACGGATCAAGGCCTGCTTAGGGGCAGGAGGGTGGTTATTCTAAAAATTATATTATCAGTCGCTAGGTAACCCCAAGGCCATCCTGATCTTTACCGCCTTCCTGCCGCAGTTCG > NC_002947/3450503‑3450800 | gTGAAGGCTCGCAGTGCTCTGAGCGGAAACCTAAAGGGAGGTCAGCGAAAAATTCTTCGATCTCTTTCGGGATGCCTTCTTCCATGGTCGGTGTCGGGAAGGTAATGCTGTCCTCCGTCAGGGTCACTACTCGCTATACTGT‑‑ATGCATGa > 2:1770907/1‑150 (MQ=255)gTGAAGGCTCGCAGTGCTCTGAGCGGAAACCTAAAGGGAGGTCAGCGAAAAATTCTTCGATCTCTTTCGGGATGCCTTCTTCCATGGTCGGTGTCGGGAAGGTAATGATGTCGGCCGTCATGGTCACTACTCGCTATACTGT‑‑ATGCATGa > 2:1855883/1‑150 (MQ=255) tGAAGGCTCGCAGTGCTCTGAGCGGAAACCTAAAGGGAGGTCAGCGAAAAATTCTTCGATCTCTTTCGGGATGCCTTCTTCCATGGTCGGTGTCGGGAAGGTAATGATGTCGGCCGTCATGGTCACTACTCGCTATACTGT‑‑ATGCATGaa < 2:1837991/150‑1 (MQ=255) tCGCAGTGCTCTGAGCGGAAACCTAAAGGGAGGTCAGCGAAAAATTCTTCGATCTCTTTCGGGATGCCTTCTTCCATGGTCGGTGTCGGGAAGGTAATGATGTCGGCCGTCATGGTCACTACTCGCTATACTGT‑‑ATGCATGAACAGtata < 1:1079125/150‑1 (MQ=255) ctctGAGCGGAAACCTAAAGGGAGGTCAGCGAAAAATTCTTCGATCTCTTTCGGGATGCCTTCTTCCATGGTCGGTGTCGGGAAGGTAATGATGTCGGCCGTCATGGTCACTACTCGCTATACTGT‑‑ATGCATGAACAGTATAGCGAGaaa < 1:273853/150‑1 (MQ=255) tGAGCGGAAACCTAAAGGGAGGTCAGCGAAAAATTCTTCGATCTCTTTCGGGATGCCTTCTTCCATGGTCGGTGTCGGGAAGGTAATGATGTCGGCCGTCATGGTCACTACTCGCTATACTGT‑‑ATGCATGAACAGTATAGCGAGAAAGcc > 1:721291/1‑150 (MQ=255) cgCGGAAACGAAAAGGGAGTTCAGCGAAAAATTCTTCGATCTCTTTGGGGATGCTTTCTTCCATGGTCGGTGCCGGGAAGGTAATGATGTCGGCCGTCATGGTCACTTCTCGCTATACTGT‑‑ATGCATGAACAGTATAGCGAGAAAGTCAt < 2:367493/149‑1 (MQ=255) gCGGAAACCTAAAGGGAGGTCAGCGAAAAATTCTTCGATCTCTTTCGGGATGCCTTCTTCCATGGTCGGTGTCGGGAAGGTAATGATGTCGGCCGTCATGGTCACTACTCGCCCCACGGT‑‑ATGCATGAACAGTATAGCGAGAAAGCCATc < 1:1770907/150‑1 (MQ=255) cTAAAGGGAGGTCAGCGAAAAATTCTTCGATCTCTTTCGGGATGCCTTCTTCCATGGTCGGGGTCGGGAGGGTAATGATGTCGGCCGTCGTTGTCACTACTCGCTATACTGT‑‑ATGCATGAACAGTATAGCGAGAAAGCCATCTTAAGCaa > 1:800965/1‑150 (MQ=255) tAAAGGGAGGTCAGCGAAAAATTCTTCGATCTCTTTCGGGATGCCTTCTTCCATGGTCGGTGTGGGGAAGGTGATGATGTCGGCCGTCATGGTCACTACTCGCTATACTGT‑‑ATGCATGAACAGTATAGCGAGAAAGCCATCTTAAGCAAt < 1:360150/150‑1 (MQ=255) tAAAGGGAGGTCAGCGAAAAATTCTTCGATCTCTTTCGGGATGCCTTCTTCCATGGTCGGTGTCGGGAAGGTAATGATGTCGGCCGTCATGGTCACTACTCGCTATACTGT‑‑ATGCATGAACAGTATAGCGAGAAAGCCATCTTACGCAAt > 2:1632653/1‑150 (MQ=255) tAAAGGGAGGTCAGCGAAAAATTCTTCGATCTCTTTCGGGATGCCTTCTTCCATGGTCGGTGTCGGGAAGGTAATGATGTCGGCCGTCATGGTCACTACTCGCTATACTGT‑‑ATGCATGAACAGTATAGCGAGAAAGCCATCTTAAGCAAt < 1:554537/150‑1 (MQ=255) tAAAGGGAGGTCAGCGAAAAATTCTTCGATCTCTTTCGGGATGCCTTCTTCCATGGTCGGTGTCGGGAAGGTAATGATGTCGGCCGTCATGGTCACTACTCGCTATACTGT‑‑ATGCATGAACAGTATAGCGAGAAAGCCATCTTAAGCAAt < 1:1205390/150‑1 (MQ=255) tAAAGGGAGGTCAGCGAAAAATTCTTCGATCTCTTTCGGGATGCCTTCTTCCATGGTCGGTGTCGGGAAGGTAATGATGTCGGCCGTCATGGTCACTACTCGCTATACTGT‑‑ATGCATGAACAGTATAGCGAGAAAGCCATCTTAAGCAAt < 2:609080/150‑1 (MQ=255) gTCAGCGAAAAATTCTTCGATCTCTTTCGGGATGCCTTCTTCCATGGTCGGTGTCGGGAAGGTAATGATGTCGGCCGTCATGGTCACTACTCGCTATACTGT‑‑ATGCATGAACAGTATAGCGAGAAAGCCATCTTAAGCAATGTATACGGa > 2:786120/1‑150 (MQ=255) aGCGAAAAATTCTTCGATCTCTTTCGGGATGCCTTCTTCCATGGTCGGTGTCGGGAAGGTAATGATGTCGGCCGTCATGGTCACTACTCGCTATACTGT‑‑ATGCATGAACAGTATAGCGAGAAAGCCATCTTAAGCAATGTATACGGATCa > 2:543892/1‑150 (MQ=255) gCGAAAAATTCTTCGATCTCTTTCGGGATGCCTTCTTCCATGGTCGGTGTCGGGAAGGTAATGATGTCGGCCGTCATGGTCACTACTCGCTATACTGT‑‑ATGCATGAACAGTATAGCGAGAAAGCCATCTTAAGCAATGTATACGGATCaa > 1:1157599/1‑150 (MQ=255) cGAAAAATTCTTCGATCTCTTTCGGGATGCCTTCTTCCATGGTCGGTGTCGGGAAGGTAATGATGTCGGCCGTCATGGTCACTACTCGCTATACCGA‑‑AAACATGAACAGTATAGCGAGAAAGCCATCTTAAGCAATGTATACGGATCAAg < 1:1376638/150‑1 (MQ=255) aaaaaTTCTTCGATCTCTTTCGGGATGCCTTCTTCCATGGTCGGTGTCGGGAAGGTAATGATGTCGGCCGTCATGGTCACTACTCGCTATACTGT‑‑ATGCATGAACAGTATAGCGAGACAGCCGCTGTAAGCAATGTATACGGATCAAGGc < 1:675894/150‑1 (MQ=255) aaaaaTTCTTCGATCTCTTTCGGGATGCCTTCTTCCATGGTCGGTGTCGGGAAGGTAATGATGTCGGCCGTCATGGTCACTACTCGCTATACTGT‑‑ATGCATGAACAGTATAGCGAGAAAGCCATCTTAAGCAATGTATACGGATCAAGGc > 2:1882158/1‑150 (MQ=255) aaaaaTTCTTCGATCTCTTTCGGGATGCCTTCTTCCATGGTCGGTGTCGGGAAGGTAATGATGTCGGCCGTCATGGTCACTACTCGCTATACTGT‑‑ATGCATGAACAGTATAGCGAGAAAGCCATCTTAAGCAATGTATACGGATCAAGGc > 1:1553329/1‑150 (MQ=255) ttcttcGATCTCTTTCGGGATGCCTTCTTCCATGGTCGGTGTCGGGAAGGTAATGATGTCGGCCGTCATGGTCACTACTCGCTATACTGT‑‑ATGCATGAACAGTATAGCGAGAAAGCCATCTTAAGCAATGTATACGGATCAAGGCCTGCt > 1:1093425/1‑150 (MQ=255) ttcGATCTCTTTCGGGATGCCTTCTTCCATGGTCGGTGTCGGGAAGGTAATGATGTCGGCCGTCATGGTCACTCCTAGCTATACTGT‑‑ATGCATGAACAGTATAGCGAGAAAGCCATCTTAAGCAATGTATACGGATCAAGGCCTGCTTAg < 1:902782/150‑1 (MQ=255) tctcTTTCGGGATGCCTTCTTCCATGGTCGGTGTCGGGAAGGTAATGATGTCGGCCGTCATGGTCACTACTCGCTATACTGT‑‑ATGCATGAAc < 1:248905/92‑1 (MQ=255) tctcTTTCGGGATGCCTTCTTCCATGGTCGGTGTCGGGAAGGTAATGATGTCGGCCGTCATGGTCACTACTCGCTATACTGT‑‑ATGCATGAAc > 2:248905/1‑92 (MQ=255) tctTTCGGGATGCCTTCTTCCATGGTCGGTGTCGGGAAGGTAATGATGTCGGCCGTCATGGTCACTACTCGCTATACTGT‑‑ATGCATGAACAGTATAGCGAGAAAGCCATCTTAAGCAATGTATACGGATCAAGGCCTGCTTAGGGGCagg > 1:616516/1‑150 (MQ=255) tttCGGGATGCCTTCTTCCATGGTCGGTGTCGGGAAGGTAATGATGTCGGCCGTCATGGTCACTACTCGCTATACTGT‑‑ATGCATGAACAGTATAGCGAGAAAGCCATCTTAAGCAATGTATACGGATCAAGGCCTGCTTAGGGGCaggag < 1:923672/150‑1 (MQ=255) ttCGGGATGCCTTCTTCCATGGTCGGTGTCGGGAAGGTAATGATGTCGGCCGTCATGGTCACTACTCGCTATACTGT‑‑ATGCATGAACAGTATAGCGAGAAAGCCATCTTAAGCAATGTATACGGATCAAGGCCTGCTTAGGGGCaggagg < 1:370925/150‑1 (MQ=255) ttCGGGATGCCTTCTTCCATGGTCGGTGTCGGGAAGGTAATGATGTCGGCCGTCATGGTCACTACTCGCTATACTGT‑‑ATGCATGAACAGTATAGCGAGAAAGCCATCTTAAGCAATGTATACGGATCAAGGCCTGCTTAGGGGCaggagg < 1:543892/150‑1 (MQ=255) tCGGGATGCCTTCTTCCATGGTCGGTGTCGGGAAGGTAATGATGTCGGCCGTCATGGTCACTACTCGCTATACTGT‑‑ATGCATGAACAGtata > 1:794216/1‑92 (MQ=255) tCGGGATGCCTTCTTCCATGGTCGGTGTCGGGAAGGTAATGATGTCGGCCGTCATGGTCACTACTCGCTATACTGT‑‑ATGCATGAACAGtata < 2:794216/92‑1 (MQ=255) ggATGCCTTCTTCCATGGTCGGTGTCGGGAAGGTAATGATGTCGGCCGTCATGGTCACTACTCGCTATACTGT‑‑ATGCATGAACAGTATAGCGAGAAAGCCATc > 1:740586/1‑103 (MQ=255) ggATGCCTTCTTCCATGGTCGGTGTCGGGAAGGTAATGATGTCGGCCGTCATGGTCACTACTCGCTATACTGT‑‑ATGCATGAACAGTATAGCGAGAAAGCCATc < 2:740586/103‑1 (MQ=255) ggATGCCTTCTTCCATGGTCGGTGTCGGGAAGGTAATGATGTCGGCCGTCATGGTCACTACTCGCTATACTGT‑‑ATGCATGAACAGTATAGCGAGAAAGCCATCTTAAGCAATGTATACGGATCAAGGCCTGCTTAGGGGCAGGAGggtgg < 2:618605/150‑1 (MQ=255) cttcttCCATGGTCGGTGTCGGGAAGGTAATGATGTCGGCCGTCATGGTCACTACTCGCTATACTGT‑‑ATGCATGAACAGTATAGCGAGAAAGCCATCTTAAGCAATGTATACGGATCAAGGCCTGCTTAGGGGCAGGAGGGTGGTTATTc < 1:786120/150‑1 (MQ=255) cttcttCCATGGTCGGGGTCGGGAAGGTAATGATGTCGGCCGTCATGGTCACTACTCGCTATACTGT‑‑ATGCATGAACAGTATAGCGAGAAAGCCATCTTAAGCAATGTATATGGATCACGCCCAGCTTAGGGGCAGGAGGGTGGTTATTc > 1:2236/1‑150 (MQ=255) tcCATGGTCGGTGTCGGGAAGGTAATGATGTCGGCCGTCATGGTCACTACTCGCTATACTGT‑‑ATGCATGAACAGTATAGCGAGAAAGCCATCTTAAGCAATGTATACGGATCAAGGCCTGCTTAGGGGCAGGAGGGTGGTTATTCTaaaa < 1:1855883/150‑1 (MQ=255) ccATGGTCGGTGTCGGGAAGGTAATGATGTCGGCCGTCATGGTCACTACTCGCTATACTGT‑‑ATGCATGAACAGTATAGCGAGAAAGCCATCTTAAGCAATGTATACGGATCAAGGCCTGCTTAGGGGCAGGAGGGTGGTTATTCTaaaaa > 1:2206094/1‑150 (MQ=255) cATGGTCGGTGTCGGGAAGGTAATGATGTCGGCCGTCATGGTCACTACTCGCTATACTGT‑‑ATGCATGAACAGTATAGCGAGAAAGCCATCTTAAGCAATGTATACGGATCAAGGCCTGCTTAGGGGCAGGAGGGTGGTTATTCTAAAAat > 2:2036079/1‑150 (MQ=255) ggTCGGTGTCGGGAAGGTAATGATGTCGGCCGTCATGGTCACTACTCGCTATACTGTTCATGCAT‑‑ACAGTATAGCgag < 1:1351130/78‑1 (MQ=21) ggTCGGTGTCGGGAAGGTAATGATGTCGGCCGTCATGGTCACTACTCGCTATACTGTTCATGCAT‑‑ACAGTATAGCgag > 2:1351130/1‑78 (MQ=21) cGGTGTCGGGAAGGTAATGATGTCGGCCGTCATGGTCACTACTCGCTATACTGT‑‑ATGCATGAACAGTATAGCGAGAAAGCCATCTTAAGCAATGTATACGGATCAAGGCCTGCTTAGGGGCAGGAGGGTGGTTATTCTAAAAattatatt < 1:1882158/150‑1 (MQ=255) ggTGTCGCGAAGTTAATGATGTCGGCCGTCATGGTCACTACTCGCTATACTGT‑‑ATGCATGAACAGTATAGCGAGAAAGCCATCTTAAGCAATGTATACGGATCAAGGCCTGCTTAGGGGCAGGAGGGTGGTTATTCTAAAAattatatta < 1:102678/150‑1 (MQ=255) tgtCGGGAAGGTAATGATGTCGGCCGTCATGGTCACTACTCGCTATACTGT‑‑ATGCATGAACAGTATAGCGAGAAAGCCATCTTAAGCAATGTATACGGATCAAGGCCTGCTTAGGGGCAGGAGGGTGGTTATTCTAAAAATTATATTATc < 2:2018576/150‑1 (MQ=255) gtCGGGAAGGTAATGATGTCGGCCGTCATGGTCACTACTCGCTATACTGT‑‑ATGCATGAACAGTATAGCGAGAAAGCCATCTTAAGCAATGTATACGGATCAAGGCCTGCTTAGGGGCAGGAGGGTGGTTATTCTAAAAATTATATTATCa < 1:805215/150‑1 (MQ=255) gcGGGAAGGTAATGATTTCGGGCGTCATGGTCACTACTCGCTATACTGT‑‑ATGCATGAACAGTATAGCGATAAAGCCAGCTTAAGCAATGTATACGTATCAAGGCTTGCTTAGGGGCAGGAGGGTGGTTATTCTAAAAATTATATTATCAg < 2:721291/149‑1 (MQ=255) gggAAGGTAATGATGTCGGCCGTCATGGTCACTACTCGCTATACTGT‑‑ATGCATGAACAGTATAGCGAGAAAGCCATCTTAAGCAATGTATACGGATCAAGGCCTGCTTAGGGGCAGGAGGGTGGTTATTCTAAAAattat < 2:1300185/140‑1 (MQ=255) gggAAGGTAATGATGTCGGCCGTCATGGTCACTACTCGCTATACTGT‑‑ATGCATGAACAGTATAGCGAGAAAGCCATCTTAAGCAATGTATACGGATCAAGGCCTGCTTAGGGGCAGGAGGGTGGTTATTCTAAAAattat > 1:1300185/1‑140 (MQ=255) gggAAGGTAATGATGTCGGCCGTCATGGTCACTACTCGCTATACTGT‑‑ATGCATGAACAGTATAGCGAGAAAGCCATCTTAAGCAATGTATACGGATCAAGGCCTGCTTAGGGGCAGGAGGGTGGTTATTCTAAAAATTATATTATCAGTc < 2:1093425/150‑1 (MQ=255) gggAAGGTAATGATGTCGGCCGTCATGGTCACTACTCGCTATACTGT‑‑ATGCATGAACAGTATAGCGAGAAAGCCATCTTAAGCAATGTATACGGATCAAGGCCTGCTTAGGGGCAGGAGGGTGGTTATTCTAAAAATTATATTATCAGTc < 2:2206094/150‑1 (MQ=255) gcgagggTAATGCTTTCGGCCGTCATGGTCACTACTCGCTATACTGT‑‑ATGCATGAACAGTATAGCGAGAAAGCCATCTTAAGCAATGTATACCGATCAAGGCCTGCTTAGGGGCAGGAGGGTGGTTATTTTAAAAATTATATTATCAGTc < 2:800965/145‑1 (MQ=255) ggTAATGATGTCGGCCGTCATGGTCACTACTCGCTATACTGT‑‑ATGCATGAACAGTATAGCGAGAAAGCCATCTTAAGCAATGTATACGGATCAAGGCCTGCTTAGGGGCAGGAGGGTGGTTATTCTAAAAATTATATTATCAGTCGCTAg > 2:2225286/1‑150 (MQ=255) ggTAATGATGTCGGCAGTCATGGGCACTACTCGCTATACTGT‑‑ATGCATGAACAGTATAGCGAGAAAGCCATCTTAAGCAATGTATACGGATCAAGGCCTGCTTAGGGGCAGGAGGGTGGTTATTCTAAAAATTATATTATCAGTCGCTAg > 2:1192418/1‑150 (MQ=255) aaTGATGTCGGCCGTCATGGTCACTACTCGCTATACTGT‑‑ATGCATGAACAGTATAGCGAGAAAGCCATCTTAAGCAATGTATACGGATCAAGGCCTGCTTAGGGGCAGGAGGGTGGTTATTCTAAAAATTATATTATCAGTCGCTAGGTa > 1:2345022/1‑150 (MQ=255) atgatgTCGGCCGTCATGGTCACTACTCGCTATACTGT‑‑ATGCATGAACAGTATAGCGAGAAAGCCATCTTAAGCAATGTATACGGATCAAGGCCTGCTTAGGGGCAGGAGGGTGGTTATTCTAAAAATTATATTATCAGTCGCTAGGTaa > 2:807191/1‑150 (MQ=255) tgatgTCGGCCGTCATGGTCACTACTCGCTATACTGT‑‑ATGCATGAACAGTATAGCGAGAAAGCCATCTTAAGCAATGTATACGGATCAAGGCCTGCTTAGGGGCAGGAGGGTGGTTATTCTAAAAATTATATTATCAGTCGCTAGGTAAc < 1:1201357/150‑1 (MQ=255) gCCGTCATGGTCACTACTCGCTATACTGT‑‑ATGCATGAACAGTATAGCGAGAAAGCCATCTTAAGCAATGTATACGGATCAAGGCCTGCTTAGGGGCAGGAGGGTGGTTATTCTAAAAATTATATTATCAGTCGCTAGGTAACCCCAAGGc < 2:66449/150‑1 (MQ=255) cGTCATGGTCACTACTCGCTATACTGT‑‑ATGCATGAACAGTATAGCGAGAAAGCCATCTTAAGCAATGTATACGGATCAAGGCCTGCTTAGGGGCAGGAGGGTGGTTATTCTAAAAATTATATTATCAGTCGCTAGGTAACCCCAAGGCCa > 2:202582/1‑150 (MQ=255) tGGTCACTACTCGCTATACTGT‑‑ATGCATGAACAGTATAGCGAGAAAGCCATCTTAAGCAATGTATACGGATCAAGGCCTGCTTAGGGGCAGGAGggt < 1:1894481/97‑1 (MQ=255) tGGTCACTACTCGCTATACTGT‑‑ATGCATGAACAGTATAGCGAGAAAGCCATCTTAAGCAATGTATACGGATCAAGGCCTGCTTAGGGGCAGGAGggt > 2:1894481/1‑97 (MQ=255) gTCACTACTCGCTATACTGT‑‑ATGCATGAACAGTATAGCGAGAAAGCCATCTTAAGCAATGTATACGGATCAAGGCCTGCTTAGGGGCAGGAGGGTGGTTATTCTAAAAATTATATTATCAGTCGCTAGGTAACCCCAAGGCCATCCTGAt > 2:701430/1‑150 (MQ=255) gTCACTACTCGCTATACTGT‑‑ATGCATGAACAGTATAGCGAGAAAGCCATCTTAAGCAATGTATACGGATCAAGGCCTGCTTAGGGGCAGGAGGGTGGTTATTCTAAAAATTATATTATCAGTCGCTAGGTAACCCCAAGGCCATCCTGAt > 1:522918/1‑150 (MQ=255) ctactCGCTATACTGT‑‑ATGCATGAACAGTATAGCGAGAAAGCCATCTTAAGCAATGTATACGGATCAAGGCCTGCTTAGGGGCAGGAGGGTGGTTa > 1:1392782/1‑96 (MQ=255) ctactCGCTATACTGT‑‑ATGCATGAACAGTATAGCGAGAAAGCCATCTTAAGCAATGTATACGGATCAAGGCCTGCTTAGGGGCAGGAGGGTGGTTa < 2:1392782/96‑1 (MQ=255) ctCGCTATACTGT‑‑ATGCATGAACAGTATAGCGAGAAAGCCATCTTAAGCAATGTATACGGATCAAGGCCTGCTTAGGGGCAGGAGGGTGGTTa > 1:1714783/1‑93 (MQ=255) ctCGCTATACTGT‑‑ATGCATGAACAGTATAGCGAGAAAGCCATCTTAAGCAATGTATACGGATCAAGGCCTGCTTAGGGGCAGGAGGGTGGTTa < 2:1714783/93‑1 (MQ=255) ctCGCTATACTGT‑‑ATGCATGAACAGTATAGCGAGAAAGCCATCTTAAGCAATGTATACGGATCAAGGCCTGCTTAGGGGCAGGAGGGTGGTTATTCTAAAAATTATATTATCAGTCGCTAGGTAACCCCAAGGCCATCCTGATCTTTAcc > 2:564322/1‑150 (MQ=255) tCGCTATACTGTTCATGCAT‑‑ACAGTATAGCGAGAAAGCCATCTTAAGCAATGTATACGGATCAAGGCCTGCTTAGGGGCAGGAGGGTGGTTATTCTAAAAATTATATTATCAGTCGCTAGGTAAcc < 2:1807793/126‑1 (MQ=38) tCGCTATACTGTTCATGCAT‑‑ACAGTATAGCGAGAAAGCCATCTTAAGCAATGTATACGGATCAAGGCCTGCTTAGGGGCAGGAGGGTGGTTATTCTAAAAATTATATTATCAGTCGCTAGGTAAcc > 1:1807793/1‑126 (MQ=38) cGCTATACTGT‑‑ATGCATGAACAGTATAGCGTAAAAGCCATCTTAAGCAATGTATACGGATCAAGGGCTTCTTAAGGGCAGGAGGGCGGTTATTCTGAAAATTATATTATCAGTCGCTAGGTAACCCCAAGGCCATCCTGATCTTTACAGc > 1:1518500/1‑150 (MQ=255) gCTATACTGT‑‑ATGCATGAACAGTATAGCGAGAAAGCCATCTTAAGCAATGTATACGGATCAAGGCCTGCTTAGGGGCAGGAGGGTGGTTATTCTAAAAATTATATTATCAGTCGCTAGGTAACCCCAAGGCCATCCTGATCTTTACCGcc < 1:2036079/150‑1 (MQ=255) ataCTGT‑‑ATGCATGAACAGTATAGCGAGAAAGCCATCTTAAGCAATGTATACGGATCAAGGCCTGCTTAGGGGCAGGAGGGTGGTTATTCTAAAAATTATATTATCAGTCGCTAGGTAACCCCAAGGCCATCCt > 2:1507795/1‑134 (MQ=255) ataCTGT‑‑ATGCATGAACAGTATAGCGAGAAAGCCATCTTAAGCAATGTATACGGATCAAGGCCTGCTTAGGGGCAGGAGGGTGGTTATTCTAAAAATTATATTATCAGTCGCTAGGTAACCCCAAGGCCATCCt < 1:1507795/134‑1 (MQ=255) ataCTGT‑‑ATGCATGAACAGTATAGCGAGAAAGCCATCTTAAGCAATGTATACGGATCAAGGCCTGCTTAGGGGCAGGAGGGTGGTTATTCTAAAAATTATATTATCAGTCGCTAGGTAACCCCAAGGCCATCCTGATCTTTACCGCCTTc > 2:2075083/1‑150 (MQ=255) taCTGT‑‑ATGCATGAACAGTATAGCGAGAAAGCCATCTTAAGCAATGTATACGGATCAAGGCCTGCTTAGGGGCAGGAGGGTGGTTATTCTAAAAATTATATTATCAGTCGCTAGGTAACCCCAAGGCCATCCTGATCTTTACCGCCTTcc > 2:176812/1‑150 (MQ=255) t‑‑ATGCATGAACAGTATAGCGAGAAAGCCATCTTAAGCAATGTATAAGGAACAAGACACCCTTAGGGGCAGGAGGGTGTTTATTCTAAAAATTATATTATCAGTCGCTAGGTAACCCCAAGGCCATCCTGATCTTTACCGCCTTCCTGCCg > 1:296623/1‑150 (MQ=255) cATGAACAGTATAGCGAGAAAGCCATCTTAAGCAATGTATACGGATCAAGGc > 1:294477/1‑52 (MQ=255) cATGAACAGTATAGCGAGAAAGCCATCTTAAGCAATGTATACGGATCAAGGc < 2:294477/52‑1 (MQ=255) aTGAACAGTATAGCGAGAAAGCCATCTTAAGCAATGTATACGGATCAAGGCCTGCTTAGGGGCAGGAGGGTGGtt < 2:666910/75‑1 (MQ=255) aTGAACAGTATAGCGAGAAAGCCATCTTAAGCAATGTATACGGATCAAGGCCTGCTTAGGGGCAGGAGGGTGGtt > 1:666910/1‑75 (MQ=255) tGAACAGTATAGCGAGAAAGCCATCTTAAGCAATGTATACGGATCAAGGCCTGCTTAGGGGCAGGAGGGTGGTTATTCTAAAAATTATATTATCAGTCGCTAGGTAACCCCAAGGCCATCCTGATCTTTACCGCCTTCCTGCCGCAGTTc < 1:2225286/150‑1 (MQ=255) gAACAGTATAGCGAGAAAGCCATCTTAAGCAATGTATACGGATCAAGGCCTGCTTAGGGGCAGGAGGGTGGTTATTCTAAAAATTATATTATCAGTCGCTAGGTAACCCCAAGGCCATCCTGATCTTTACCGCCTTCCTGCCGCAGTTCg > 1:670235/1‑150 (MQ=255) | GTGAAGGCTCGCAGTGCTCTGAGCGGAAACCTAAAGGGAGGTCAGCGAAAAATTCTTCGATCTCTTTCGGGATGCCTTCTTCCATGGTCGGTGTCGGGAAGGTAATGATGTCGGCCGTCATGGTCACTACTCGCTATACTGT‑‑ATGCATGAACAGTATAGCGAGAAAGCCATCTTAAGCAATGTATACGGATCAAGGCCTGCTTAGGGGCAGGAGGGTGGTTATTCTAAAAATTATATTATCAGTCGCTAGGTAACCCCAAGGCCATCCTGATCTTTACCGCCTTCCTGCCGCAGTTCG > NC_002947/3450503‑3450800 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |