| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 3,460,269 | Δ1 bp | 11.1% | coding (136/1446 nt) | PP_3075 ← | transcriptional regulator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 3,460,269 | 0 | T | . | 11.1% | 288.3 / 31.5 | 99 | coding (136/1446 nt) | PP_3075 | transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base T (40/46); new base . (7/4); total (47/52) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.47e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.73e-01 | |||||||||||
Only 100 of 104 total aligned reads displayed.
CATCAGGCTGCCGGGGATCACTGTTTCGCACGGCTGGCCGATGGCACTGGCAGCGTCGGCCAGGCCAAAGCGTCGGGCGTAGCGTTCGTTCATCCAGACGA‑TGCGTGCCTGGCGGTCGACGATCACCGTGCCCTCGCTGGACTGTTCGATGATC‑TCGAACAGCGAGCGGATCGCCAGTTGCCGTACCTGGGGGTAGTCCTTGAGGCTGTCGCTGTCGTGCATGGGTGAACATCCTGAATCATGTATTGGCACAAGCCCGCGAAAAGGCCAGGCCTGAAAACTCATCGTCGGGGGTCAAA > NC_002947/3460120‑3460418 | cATCAGGCTGCCGGGGATCACTGTTTCGCACGGCTGGCCGATGGCACTGGCAGCGTCGGCCAGGCCAAAGCGTCGGGCGTAGCGTTCGTTCATCCAGACGA‑TGCGTGCCTGGCGGTCGACGATCACCGTGCCCTCGCTGGACTGTTCgat < 2:931385/150‑1 (MQ=255) tCAGGCTGCCGGGGATCACTGTTTCGCACGGCTGGCCGATGGCACTGGCAGCGTCGGCCAGGCCAAAGCGTCGGGCGTAGCGTTCGTTCATCCAGACGA‑TGCGTGCCTGGCGGTCGACGATCACCGTGCCCTCGCTGGACTGTTCgatga < 2:1212727/150‑1 (MQ=255) ggCTGCCGGGGATCACTGTTTCGCACGGCTGGCCGATGGCACTGGCAGCGTTGGCCAGGCCAAAGCGTCGGGCGTAGCGTTCGTTCATCCAGACGA‑TGCGTGCCTGGCGGTCGACGATCACCGTGCCCTCGCTGGACTGTTCGATGAtc‑t > 2:2304754/1‑150 (MQ=255) gCTGCCGGGGATCACTGTTTCGCACGGCTGGCCGATGGCACTGGCAGCGTCGGCCAGGCCAAAGCGTCGGGCGTAGCGTTCGTTCATCCAGACGA‑TGCGTGCCTGGCGGTCGACGATCACCGTGCCCTCGCTGGACTGTTCGATGAtc‑tc < 2:1901813/150‑1 (MQ=255) gCTGCCGGGGATCACTGTTTCGCACGGCTGGCCGATGGCACTGGCAGCGTCGGCCAGGCCAAAGCGTCGGGCGTAGCGTTCGTTCATCCAGACGA‑TGCGTGCCTGGCGGTCGACGATCACCGTGCCCGCGCTGGACTGTTCGATGAtc‑tc < 1:328617/150‑1 (MQ=255) tGCCGGGGATCACTGTTTCGCACGGCTGGCCGATGGCACTGGCAGCGTCGGCCAGGCCAAAGCGTCGGGCGTAGCGCCACTTTTCACAGGCCACTGCGGTTGCGGCAG‑GGACGATCACCGTGCCCTCGCTGGACTGTTCGCTGAtg‑tcta > 1:891289/1‑148 (MQ=255) gCCGGGGATCACTGTTTCGCACGGCTGCCCGATGGCACTGGCAGCGTCGGCCAGGCCAAAGCGTCGGGCGTAGCGTTCGTTCATCCAGACGA‑TGCGTGCCTGGCGGTCGACGATCACCGTGCCCTCGCTGGACTGTTCGATGATC‑TCGaa < 1:436306/150‑1 (MQ=255) cGGGGATCACTGTTTCGCACGGCTGGCCGATGGCACTGGCAGCGTCGGCCAGGCCAAAGCGTCGGGCGTAGCGTTCGTTCATCCAGACGA‑TGCGTGCCTGGCGGTCGACGATCACCGTGCCCTCGCTGGACTGTTCGATGATC‑TCGAACa > 1:1945188/1‑150 (MQ=255) ggggATCACTGTTTCGCACGGCTGGCCGATGGCACTGGCAGCGTCGGCCAGGCCAAAGCGTCGGGCGTAGCGTTCGTTCATCCAGACGA‑TGCGTGCCTGGCGGTCGACGATCACCGTGCCCTCGCTGGACTGTTCGA‑GATCATCGAACag < 1:1717535/150‑1 (MQ=255) gggATCACTGTTTCGCACGGCTGGCCGATGGCACTGGCAGCGTCGGCCAGGCCAAAGCGTCGGGCGTAGCGTTCGTTCATCCAGACGA‑TGCGTGCCTGGCGGTCGACGATCACCGTGCCCTCGCTGGACTGTTCGATGATC‑TCGAACagc < 1:134008/150‑1 (MQ=255) gggATCACTGTTTCGCACGGCTGGCCGATGGCACTGGCAGCGTCGGCCAGGCCAAAGCGTCGGGCGTAGCGTTCGTTCATCCAGACGA‑TGCGTGCCTGGCGGTCGACGATCACCGTGCCCTCGCTGGACTGTTCGATGATC‑TCGAACagc < 1:34485/150‑1 (MQ=255) gggATCACTGTTTCGCACGGCTGGCCGATGGCACTGGCAGCGTCGGCCAGGCCAAAGCGTCGGGCGTAGCGTTCGTTCATCCAGACGA‑TGCGTGCCTGGCGGTCGACGATCACCGTGCCCTCGCTGGACTGTTCGA‑GATCATCGAACagt < 2:1011776/150‑2 (MQ=255) tCACTGTTTCGCACGGCTGGCCGATGGCACTGGCAGCGTCGGCCAGGCCAAAGCGTCGGGCGTAGCGTTCGTTCATCCAGACGA‑TGCGTGCCTGGCGGTCGACGATCACCGTGCCCTCGCTGGACTGTTCGATGATC‑TCGAACagcgagc < 1:2083648/150‑1 (MQ=255) cTGTTTCGCACGGCTGGCCGATGGCACTGGCAGCGTCGGCCAGGCCAAAGCGTCGGGCGTAGCGTTCGTTCATCCAGACGA‑TGCGTGCCTGGCGGTCGACGATCACCGTGCCCTCGCTGGACTGTTCGA‑GATCATCGAACa < 1:1513419/141‑1 (MQ=255) cTGTTTCGCACGGCTGGCCGATGGCACTGGCAGCGTCGGCCAGGCCAAAGCGTCGGGCGTAGCGTTCGTTCATCCAGACGA‑TGCGTGCCTGGCGGTCGACGATCACCGTGCCCTCGCTGGACTGTTCGA‑GATCATCGAACa > 2:1513419/1‑141 (MQ=255) gTTTCGCACGGCTGGCCGATGGCACTGGCAGCGTCGGCCAGGCCAAAGCGTCGGGCGTAGCGTTCGTTCATCCAGACGA‑TGCGTGCCTGGCGGTCGACGATCACCGTGCCCTCGCTGGACTGTTCGATGATC‑TCGAACAGCGAGCGGATc < 2:1370198/150‑1 (MQ=255) tttCGCACGGCTGGCCGATGGCACTGGCAGCGTCGGCCAGGCCAAAGCGTCGGGCGTAGCGTTCGTTCATCCAGACGA‑TGCGTGCCTGGCGGTCGACGATCACCGTGCCCTCGCTGGACTGTTCGATGATC‑TCGAACAGCGAGCGGATCg > 1:248222/1‑150 (MQ=255) ttCGCACGGCTGGCCGATGGCACTGGCAGCGTCGGCCAGGCCAAAGCGTCGGGCGTAGCGTTCGTTCATCCAGACGA‑TGCGTGCCTGGCGGTCGACGATCACCGTGTCCTCGCTGGACTGTTCGATGATC‑TCGAACAGCGAGCGGATCGc < 1:2377688/150‑1 (MQ=255) cGCACGGCTGGCCGATGGCACTGGCAGCGTCGGCCAGGCCAAAGCGTCGGGCGTAGCGTTCGTTCATCCAGACGA‑TGCGTGCCTGGCGGTCGACGATCACCGTGCCCTCGCTGGACTGTTCGATGATC‑TCGAACAGCGAGCGGATCGCCa < 2:2197740/150‑1 (MQ=255) gCACGGCTGGCCGATGGCACTGGCAGCGTCGGCCAGGCCAAAGCGTCGGGCGTAGCGTTCGTTCATCCAGACGA‑TGCGTGCCTGGCGGTCGACGATCACCGTGCCCTCGCTGGACTGTTCGATGCTC‑TCGAACAGCGAGCGGATCGCCAg > 1:59789/1‑150 (MQ=255) gCACGGCTGGCCGATGGCACTGGCAGCGTCGGCCAGGCCAAAGCGTCGGGCGTAGCGTTCGTTCATCCAGACGA‑TGCGTGCCTGGCGGTCGACGATCACCGTGCCCTCGCTGGACTGTTCGATGATC‑TCGAACAGCGAGCGGATCGCCAg > 2:1204043/1‑150 (MQ=255) cACGGCTGGCCGATGGCACTGGCAGCGTCGGCCAGGCCAAAGCGTCGGGCGTAGCGTTCGTTCATCCAGACGA‑TGCGTGCCTGGCGGTCGACGATCACCGTGCCCTCGCTGGACTGTTCGA‑GATCATCGAACag < 1:833364/134‑1 (MQ=255) cACGGCTGGCCGATGGCACTGGCAGCGTCGGCCAGGCCAAAGCGTCGGGCGTAGCGTTCGTTCATCCAGACGA‑TGCGTGCCTGGCGGTCGACGATCACCGTGCCCTCGCTGGACTGTTCGA‑GATCATCGAACag > 2:833364/1‑134 (MQ=255) ggCTGGCCGATGGCACTGGCAGCGTCGGCCAGGCCAAAGCGTCGGGCGTAGCGTTCGTTCATCCAGACGA‑TGCGTGCCTGGCGGTCGACGATCACCGTGCCCTCGCTGGACTGTTCGATGATC‑TCGAACAGCGAGCGGATCGCCAGTTGc < 1:1537357/150‑1 (MQ=255) ggCTGGCCGATGGCACTGGCAGCGTCGGCCAGGCCAAAGCGTCGGGCGTAGCGTTCGTTCATCCAGACGA‑TGCGTGCCTGGCGGTCGACGATCACCGTGCCCTCGCTGGACTGTTCGATGATC‑TCGAACAGCGAGCGGATCGCCAATTGc < 2:899939/150‑1 (MQ=255) aTGGCACTGGCAGCGTCGGCCAGGCCAAAGCGTCGGGCGTAGCGTTCGTTCATCCAGACGA‑TGCGTGCCTGGCGGTCGACGATCACCGTGCCCTCGCTGGACTGTTCGATGATC‑TCGAACAGCGAGCGGATCGCCAGTTGCCGTACCTgg < 2:2102700/150‑1 (MQ=255) tGGCACTGGCAGCGTCGCTTCGGCTAAAGCGTCGTGCGTAGCGTTCGTTCATCCAGACGA‑TGCGTGCCTGCCGGTCGACGCTCACCGTGCCCTCGCTGGACTGTTCGATGATC‑TCGAACAGCGAGCGGATCGCCAGTTGCCGTACCTggg < 1:737027/150‑1 (MQ=255) ggCACTGGCAGCGTCGGCCAGGCCAAAGCGTCGGGCGTAGCGTTCGTTCATCCAGACGA‑TGCGTGCCTGGCGGTCGACGATCACCGTGCCCTCGCTGGCCTGTTCGCTGATC‑TCGAACAGCGAGCGGATCGCCAGTTGCCGTACCTgggg < 1:1631156/150‑1 (MQ=255) cACTGGCAGCGTCGGCCAGGCCAAAGCGTCGGGCGTAGCGTTCGTTCATCCAGACGA‑TGCGTGCCTGGCGGTCGACGATCACCGTGCCCTCGCTGGACTGTTCGATGATC‑TCGAACAGCGAGCGGATCGCCAGTTGCCGTACCTGGGGGt > 2:1759926/1‑150 (MQ=255) gCAGCGTCGGCCAGGCCAAAGCGTCGGGCGTAGCGTTCGTTCATCCAGACGA‑TGCGTGCCTGGCGGTCGACGATCACCGTGCCCTCGCTGGACTGTTCGATGATC‑TCGAACAGCGAGCGGATCGCCAGTTGCCGTACCTGGGGGTAGTcc > 2:1234871/1‑150 (MQ=255) gCAGCGTCGGCCAGGCCAAAGCGTCGGGCGTAGCGTTCGTTCATCCAGACGA‑TGCGTGCCGGGCGGTCGACGATCACCGTGCCCTCGCTGGACTGTTTGAGGATC‑TCGAACAGCGAGCGGATCGCCAGTTGCCGTACCTGGGGGTAGTcc < 1:173870/150‑1 (MQ=255) cAGCGTCGGCCAGGCCAAAGCGTCGGGCGTAGCGTTCGTTCATCCAGACGA‑TGCGTGCCTGGCGGTCGACGATCACCGTGCCCTCGCTGGACTGTTCGATGATC‑TCGAACAGCGAGCGGATCGCCAGTTGCCGTACCTGGGGGTAGTCCt > 1:1589445/1‑150 (MQ=255) aGCGTCGGCCAGGCCAAAGCGTCGGGCGTAGCGTTCGTTCATCCAGACGA‑TGCGTGCCTGGCGGTCGACGATCACCGTGCCCTCGCTGGACTGTTCGATGATC‑TCGAACAGCGAGCGGATCGCCAGTTGCCGTACCTgg > 1:1068588/1‑139 (MQ=255) aGCGTCGGCCAGGCCAAAGCGTCGGGCGTAGCGTTCGTTCATCCAGACGA‑TGCGTGCCTGGCGGTCGACGATCACCGTGCCCTCGCTGGACTGTTCGATGATC‑TCGAACAGCGAGCGGATCGCCAGTTGCCGTACCTgg < 2:1068588/139‑1 (MQ=255) cGTCGGCCAGGCCAAAGCGTCGGGCGTAGCGTTCGTTCATCCAGACGA‑TGCGTGCCTGGCGGTCGACGATCACCGTGCCCTCGCTGGACTGTTCGATGATC‑TCGAACAGCGAGCGGATCGCCAGTTGCCGTACCTGGGGGTAGTCCTTGa < 2:2032099/150‑1 (MQ=255) gTCGGCCAGGCCAAAGCGTCGGGCGTAGCGTTCGTTCATCCAGACGA‑TGCGTGCCTGGCGGTCGACGATCACCGTGCCCTCGCTGGACTGTTCGATGATC‑TCGAACAGCGAGCGGATCGCCAGTTGCCGTACCTGGGGGTAGTCCTTGAg > 1:1735470/1‑150 (MQ=255) ccaggccaAAGCGTCGGGCGTAGCGTTCGTTCATCCAGACGA‑TGCGTGCCTGGCGGTCGACGATCACCGTGCCCTCGCTGGACTGTTCGATGATC‑TCGAACAGCGAGCGGATCGCCAGTTGCCGTACCTGGGGGTAGTCCTTGAGgctgt < 1:1803363/150‑1 (MQ=255) caggccaAAGCGTCGGGCGTAGCGTTCGTTCATCCAGACGA‑TGCGTGCCTGGCGGTCGACGATCACCGTGCCCTCGCTGGACTGTTCGATGATC‑TCGAACAGCGAGCGGATCGCCAGTTGCCGTACCTGGGGGTAGTCCTTGAGgctgtc < 1:1784196/150‑1 (MQ=255) caggccaAAGCGTCGGGCGTAGCGTTCGTTCATCCAGACGA‑TGCGTGCCTGGCGGTCGACGATCACCGTGCCCTCGCTGGACTGTTCGATGATC‑TCAAACAGCGAGCGGATCGCCAGTTGCCGTACCTGGGGGTAGTCCTTGAGgctgtc < 1:1759926/150‑1 (MQ=255) gccaAAGCGTCGGGCGTAGCGTTCGTTCATCCAGACGA‑TGCGTGCCTGGCGGTCGACGATCACCGTGCCCTCGCTGGACTGTTCGATGATC‑TCGAACAGCGAGCGGATCGCCAGTTGCCGTACCTGGGGGTAGTCCTTGAGgctgtcgct > 2:1987029/1‑150 (MQ=255) ccaAAGCGTCGGGCGTAGCGTTCGTTCATCCAGACGA‑TGCGTGCCTGGCGGTCGACGATCACCGTGCCCTCGCTGGACTGTTCGATGATC‑TCGAACAGCGAGCGGATCGTTAGTTGCCGTACCTGGGGGTAGTCCTTGAGgctgtcgctg > 1:22601/1‑150 (MQ=255) aaaGCGTCGGGCGTAGCGTTCGTTCATCCAGACGA‑TGCGTGCCTGGCGGTCGACGATCACCGTGCCCTCGCTGGACTGTTCGATGATC‑TCGAACAGCGAGCGGATCGCCAGTTGCCGTACCTGGGGGTAGTCCTTGAGgctgtcgctgtc > 2:451163/1‑150 (MQ=255) tCGGGCGTAGCGTTCGTTCATCCAGACGA‑TGCGTGCCTGGCGGTCGACGATCACCGTGCCCTCGCTGGACTGTTCGATGATC‑TCGAACAGCGAGCGGATCGCCAGTTGCCGTACCTGGGGGTAGTCCTTGAGGCTGTCGCTGTCGTGCAt < 2:2212512/150‑1 (MQ=255) tCGGGCGTAGCGTTCGTTCATCCAGACGA‑TGCGTGCCTGGCGGTCGACGATCACCGTGCCCTCGCTGGACTGTTCGATGATC‑TCGAACAGCGAGCGGATCGCCAGTTGCCGTACCTGGGGGTAGTCCTTGAGGCTGTCGCTGTCGTGCAt > 1:2095092/1‑150 (MQ=255) gggCGTAGCGTTCGTTCATCCAGACGA‑TGCGTGCCTGGCGGTCGACGATCACCGTGCCCTCGCTGGACTGTTCGATGATC‑TCGAACAGCGAGCGGATCGCCAGTTGCCGTACCTGGGGGTAGTCCTTGAGGCTGTCGCTGTCGTGCATgg < 1:2389308/150‑1 (MQ=255) gTAGCGTTCGTTCATCCAGACGA‑TGCGTGCCTGGCGGTCGACGATCACCGTGCCCTCGCTGGACTGTTCGATGATC‑TCGAACAGCGAGCGGATCGCCAGTTGCCGTACCTGGGGGTAGTCCTTGAGGCTGTCGCTGTCGTGCATGGGTGa > 2:1888607/1‑150 (MQ=255) tAGCGTTCGTTCATCCAGACGA‑TGCGTGCCTGGCGGTCGACGATCACCGTGCCCTCGCTGGACTGTTCGATGATC‑TCGAACAGCGAGCGGATCGCCAGTTGCCGTACCTGGGGGTAGTCCTTGAGGCTGTCGCTGTCGTGCATGGGTGaa < 1:213912/150‑1 (MQ=255) tcgttcATCCAGACGA‑TGCGTGCCTGGCGGTCGACGATCACCGTGCCCTCGCTGGACTGTTCGATGATC‑TCGAACAGCGAGCGGATCGCCAGTTGCCGTACCTGGGGGTAGTCCTTGAGGCTGTCGCTGTCGTGCATGGGTGAACATCCt < 1:1987029/150‑1 (MQ=255) gttcATCCAGACGA‑TGCGTGCCTGGCGGTCGACGATCACCGTGCCCTCGCTGGACTGTTCGATGATC‑TCGAACAGCGAGCGGATCGCCAGTTGCCGTACCTGGGGGTAGTCCTTGa > 2:939903/1‑116 (MQ=255) gttcATCCAGACGA‑TGCGTGCCTGGCGGTCGACGATCACCGTGCCCTCGCTGGACTGTTCGATGATC‑TCGAACAGCGAGCGGATCGCCAGTTGCCGTACCTGGGGGTAGTCCTTGa < 1:939903/116‑1 (MQ=255) gttcATCCAGACGA‑TGCGTGCCTGGCGGTCGACGATCACCGTGCCCTCGCTGGACTGTTCGATGATC‑TCGAACAGCGAGCGGATCGCCAGTTGCCGTACCTGGGGGTAGTCCTTGAGGCTGTCGCTGTCGTGCATGGGTGAACATCCTGa > 1:2248011/1‑150 (MQ=255) ttcATCCAGACGA‑TGCGTGCCTGGCGGTCGACGATCACCGTGCCCTCGCTGGACTGTTCGATGATC‑TCGAACAGCGAGCGGATCGCCAGTTGCCGTACCTGGGGGTAGTCCTTGa < 1:326581/115‑1 (MQ=255) ttcATCCAGACGA‑TGCGTGCCTGGCGGTCGACGATCACCGTGCCCTCGCTGGACTGTTCGATGATC‑TCGAACAGCGAGCGGATCGCCAGTTGCCGTACCTGGGGGTAGTCCTTGa > 2:326581/1‑115 (MQ=255) aTCCAGACGA‑TGCGTGCCTGGCGGTCGACGATCACCGTGCCCTCGCTGGACTGTTCGATGATC‑TCGAACAGCGAGCGGATCGCCAGTTGCCGTACCTGGGGGTAGTCATTTAGGCTGTCGCTGTCGTGCATGGGTGAACATCCTGAATCa > 1:2200660/1‑150 (MQ=255) tCCAGACGA‑TGCGTGCCTGGCGGTCGACGATCACCGTGCCCTCGCTGGACTGTTCGATGATC‑TCGAACAGCGAGCGGATc > 1:1148836/1‑80 (MQ=255) tCCAGACGA‑TGCGTGCCTGGCGGTCGACGATCACCGTGCCCTCGCTGGACTGTTCGATGATC‑TCGAACAGCGAGCGGATc < 2:1148836/80‑1 (MQ=255) tCCAGACGA‑TGCGTGCCTGGCGGTCGACGATCACCGTGCCCTCGCTGGACTGTTCGATGATC‑TCGAACAGCGAGCGGATCGCCAGTTGCCGTACCTGGGGGTAg < 1:1841963/104‑1 (MQ=255) tCCAGACGA‑TGCGTGCCTGGCGGTCGACGATCACCGTGCCCTCGCTGGACTGTTCGATGATC‑TCGAACAGCGAGCGGATCGCCAGTTGCCGTACCTGGGGGTAg > 2:1841963/1‑104 (MQ=255) tCCAGACGA‑TGCGTGCCTGGCGGTCGACGATCACCGTGCCCTCGCTGGACTGTTCGATGATC‑TCGAACAGCGAGCGGATCGCCAGTTGCCGTACCTGGGGGTAGTCCTTGAGGCTGTCGCTGTCGTGCATGTGTGAACATCCTGAATCAt > 1:411840/1‑150 (MQ=255) tCCAGACGA‑TGCGTGCCTGGCGGTCGACGATCACCGTGCCCTCGCTGGACTGTTCGATGATC‑TCGAACAGCGAGCGGATCGCCAGTTGCCGTACCTGGGGGTAGTCCTTGAGGCTGTCGCTGTCGTGCATGGGTGAACATCCTGAATCAt > 2:1624174/1‑150 (MQ=255) aGACGA‑TGCGTGCCTGGCGGTCGACGATCACCGTGCCCTCGCTGGACTGTTCGATGATC‑TCGAACAGCGAGCGGATCGCCAGTTGCCGTACCTgggg > 1:1005995/1‑97 (MQ=255) aGACGA‑TGCGTGCCTGGCGGTCGACGATCACCGTGCCCTCGCTGGACTGTTCGATGATC‑TCGAACAGCGAGCGGATCGCCAGTTGCCGTACCTgggg < 2:1005995/97‑1 (MQ=255) aGACGA‑TGCGTGCCTGGCGGTCGACGATCACCGTGCCCTCGCTGGACTGTTCGATGATC‑TCGAACAGCGAGCGGATCGCCAGTTGCCGTACCTGGGGGTAGTCCTTGAGGCTGTCGCTGTCGTGCATGGGTGAACATCCTGAATCAt < 2:1990362/147‑1 (MQ=255) aGACGA‑TGCGTGCCTGGCGGTCGACGATCACCGTGCCCTCGCTGGACTGTTCGATGATC‑TCGAACAGCGAGCGGATCGCCAGTTGCCGTACCTGGGGGTAGTCCTTGAGGCTGTCGCTGTCGTGCATGGGTGAACATCCTGAATCAt > 1:1990362/1‑147 (MQ=255) gA‑TGCGTGCCTGGCGGTCGACGATCACCGTGCCCTCGCTGGACTGTTCGATGATC‑TCGAACAGCGAGCGGATCGCCAGTTGCCGTACCTGGGGGTAGTCCTTGAGGCTGTCGCTGTCGTGCATGGGTGAACATCCTGAATCATGTATTgg < 1:1204043/150‑1 (MQ=255) a‑TGCGTGCCTGGCGGTAGACGATCACCGTGCCCTCGCTGGACTGTTCGATGATC‑TCGAACAGCGAGCGGATCGCCAGTTGCCGTACCTGGGGGTAGTCCTTGAGGCTGTCGCTGTCGTGCATGGGTGAACATACTGAACCATGTCTTGGc > 2:292524/1‑150 (MQ=255) gCGTGCCTGGCGGTCGACGATCACCGTGCCCTCGCTGGACTGTTCGATGATC‑TCGAACAGCGAGCGGATCGCCAGTTGCCGTACCTGGGGGTAGTCCTTGAGGCTGTCGCTGTCGTGCATGGGTGAACATCCTGAATCATGTATTGGcac < 1:1631045/150‑1 (MQ=255) gTCGACGATCACCGTGCCCTCGCTGGACTGTTCGATGATC‑TCGAACAGCGAGCGGATCGCCAGTTGCCGTACCTGGGGGTAGTCCTTGAGGCTGTCGCTGTCGTGCATGGGTGAACATCCTGAATCATGTATTGGCACAAGCCCGCGaaa > 2:2291288/1‑150 (MQ=255) tCGACGATCACCGTGCCCTCGCTGGACTGTTCGATGATC‑TCGAACAGCGAGCGGATCGCCAGTTGCCGTACCTGGGGGTAGTCCTTGAGGCTGTCGCTGTCGTGCATGGGTGAACATCCTGAATCATGTATTGGCACAAGCCCGCGaaaa < 2:245370/150‑1 (MQ=255) tCGACGATCACCGTGACATCGCTGGTGCGTTCGCCGAGC‑TTGAACAGCTAGCGGATCGCCAGTTGCCGTACCTGGGGGTAGTCCTTGAGGCTGTCGCTGTCGTGCATGGGTGAACATCCTGGATCATGTATTGGCACAAGCCCGCGaaaa < 2:22601/150‑1 (MQ=255) cgacgaTCACCGTGCCCTCGCTGGACTGTTCGATGATC‑TCGAACAGCGAGCGGATCGCCAGTTGCCGTACCTGGGGGTAGTCCTTGAGGCTGTCGCTGTCGTGCATgg > 1:1220151/1‑108 (MQ=255) cgacgaTCACCGTGCCCTCGCTGGACTGTTCGATGATC‑TCGAACAGCGAGCGGATCGCCAGTTGCCGTACCTGGGGGTAGTCCTTGAGGCTGTCGCTGTCGTGCATgg < 2:1220151/108‑1 (MQ=255) gacgaTCACCGTGCCCTCGCTGGACTGTTCGATGATC‑TCGAACAGCGAGCGGATCGCCAGTTGCCGTACCTGGGGGTa < 2:1476910/78‑1 (MQ=255) gacgaTCACCGTGCCCTCGCTGGACTGTTCGATGATC‑TCGAACAGCGAGCGGATCGCCAGTTGCCGTACCTGGGGGTa > 1:1476910/1‑78 (MQ=255) cACCGTGCCCTCGCTGGACTGTTCGATGATC‑TCGAACAGCGAGCGGATCGCCAGTTGCCGTACCTGGGGGTAGTCCTTGAGGCTGTCGCTGTCGTGCATGGGTGAACATCCTGAATCATGAATTTCCACAAGCCCGCGAAAaggccaggc < 1:1530121/150‑1 (MQ=255) ccGTGCCCTCGCTGGACTGTTCGATGATC‑TCGAACAGCGAGCGGATCGCCAGTTGCCGTACCTgggg < 2:507069/67‑1 (MQ=255) ccGTGCCCTCGCTGGACTGTTCGATGATC‑TCGAACAGCGAGCGGATCGCCAGTTGCCGTACCTgggg > 1:507069/1‑67 (MQ=255) ccGTGCCCTCGCTGGACTGTTCGATGATC‑TCGAACAGCGAGCGGATCGCCAGTTGCCGTACCTGGGGGTAGTCCTTGAGGCTGTCGCTGTCGTGCATGGGTGAACATCCTGAATCATg < 1:95133/118‑1 (MQ=255) ccGTGCCCTCGCTGGACTGTTCGATGATC‑TCGAACAGCGAGCGGATCGCCAGTTGCCGTACCTGGGGGTAGTCCTTGAGGCTGTCGCTGTCGTGCATGGGTGAACATCCTGAATCATGTATTGGCACAAGCCCGCGAAAAGGCCAGGCCt > 2:1413399/1‑150 (MQ=255) cGTGCCCTCGCTGGACTGTTCGATGATC‑TCGAACAGCGAGCGGATCGCCAGTTGCCGTACCTGGGGGTAGTCCTTGAGGCTGTCGCTGTCGTGCATGGGTGAACATCCTGAATCATGTATTGGCACAAGCCCGCGAAAAGGCCAGGCCTg < 2:1589445/150‑1 (MQ=255) cccTCGCTGGACTGTTCGATGATC‑TCGAACAGCGAGCGGATCGCCAGTTGCCGTACCTGGGGGTAGTCCTTGAGGCTGTCGGTGTCGTGCATGGGTGAACATCCTGAATCATGTATTGGCACAAGCCCGCGAAAAGGCCAGGCCTGaaaa < 2:1735470/150‑1 (MQ=255) ccTCGCTGGACTGTTCGATGATC‑TCGAACAGCGAGCGGATCGCCAGTTGCCGTACCTGGGGGTAGTCCTTGAGGCTGTCGCTGTCGTGCATGGGTGAACATCCTGAATCATGTATTgg > 1:1406674/1‑118 (MQ=255) ccTCGCTGGACTGTTCGATGATC‑TCGAACAGCGAGCGGATCGCCAGTTGCCGTACCTGGGGGTAGTCCTTGAGGCTGTCGCTGTCGTGCATGGGTGAACATCCTGAATCATGTATTgg < 2:1406674/118‑1 (MQ=255) cTCGCTGGACTGTTCGATGATC‑TCGAACAGCGAGCGGATCGCCAGTTGCCGTACCTGGGGGTAGTCCTTGAGGCTGTCGCTGTCGTGCATgg < 1:700347/92‑1 (MQ=255) cTCGCTGGACTGTTCGATGATC‑TCGAACAGCGAGCGGATCGCCAGTTGCCGTACCTGGGGGTAGTCCTTGAGGCTGTCGCTGTCGTGCATgg > 2:700347/1‑92 (MQ=255) tCGCTGGACTGTTCGATGATC‑TCGAACAGCGAGCGGATCGCCAGTTGCCGTACCTGGGGGTAGTCCTTGAGGCTGTCGCTGTCGTGCATGGGTGAACATCCTGAATCATGTATTGGCACAAGCCCGCGAAAAGGCCAGGCCTGAAAACTc > 1:1884305/1‑150 (MQ=255) cTGGACTGTTCGATGATC‑TCGAACAGCGAGCGGATCGCCAGTTGCCGTACCTGGGGGTAGTCCTTGAGGCTGTCGCTGTCGTGCATGGGTGAACATCCTGAATCATGTATTGGCACAAGCCCGCGAAAAGGCCAGGCCTGAAAACTCAtc < 1:2304754/150‑1 (MQ=255) gACTGTTCGATGATC‑TCGAACAGCGAGCGGATCGCCAGTTGCCGTACCTGGGGGTAGTCCTTGAGGCTGTCGCTGTCGTGCATGGGTGAACATCCTGAATCATGTATTGGCACAAGCCCGCGAAAAGGCCAGGCCTGAAAACTCAtcgtc > 2:246559/1‑150 (MQ=255) gcTGTTCGA‑GATCATCGAACAGCGAGCGGATCGCCAGTTGCCGTACCTGGGGGTAGTCCTTGAGGCTGTCGCTGTCGTGCATGGGTGAACATCCTGAATCATGTATTGGCACAAGCCCGCGAAAAGGCCAGGCCTGAAAACTCAtcgtcg > 1:841619/2‑150 (MQ=255) tagTTCGATGTAC‑TCGATCAGCGAGGGGATCGCCAGTTGCCGTACCTGGGGGTAGTCCTTGAGGCTGTCGCTGTCGTGCATGGGTGAACATCCTGAATCATGTATTGGCACAAGCCCGCTAAAAGGCCAGGCCTGAAAACTCATCGTCgg < 2:1945188/148‑1 (MQ=255) cTGTTCGATGATC‑TCGAACAGCGAGCGGATCGCCAGTTGCCGTACCTGGGGGTAGTCCTTGAGGCTGTCGCTGTCGTGCATGGGTGAACATCCTGAATCATGTATTGGCACAAGCCCGCGAAAAGGCCAGGCCTGAAAACTCATCGTCgg < 2:254570/150‑1 (MQ=255) cTGTTCGA‑GATCATCGAACAGCGAGCGGATCGCCAGTTGCCGTACCTGGGGGTAGTCCTTGAGGCTGTCGCTGTCGTGCATGGGTGAACATCCTGAATCATGTATTGGCACAAGCCCGCGAAAAGGCCAGGCCTGAAAACTCATCGTCgg > 1:1685690/1‑150 (MQ=255) cTGTTCGA‑GATCATCGAACAGCGAGCGGATCGACAATTGCCGTACGGGGGGGTAGTCCTTGAGGCTGTCGCTGTCGTTCATGGGTGAACATCCTGAATCATGTATTGGCACAAGCCCGCGAAAAGGCCAGGCCTGAAAACTCATCGTCgg > 1:1665114/1‑150 (MQ=255) tGTTCGATGATC‑TCGAACAGCGAGCGGATCGCCAGTTGCCGTACCTgggg < 1:1613522/50‑1 (MQ=255) tGTTCGATGATC‑TCGAACAGCGAGCGGATCGCCAGTTGCCGTACCTgggg > 2:1613522/1‑50 (MQ=255) tGTTCGA‑GATCATCGAACAGCGAGCGGATCGCCAGTTGCCGTACCTGGGGGTAGTCCTTGAGGCTGTCGCTGTCGTGCATGGGTGAACATCCTGAATCATGTATTGGCACAAGCCCGCGAAAAGGCCAGGCCTGAAAACTCATCGTCggg > 2:1036401/1‑150 (MQ=255) gTTCGATGATC‑TCGAACAGCGAGCGGATCGCCAGTTGCCGTACCTGGGGGTAGTCCTTGAGGCTGTCGCTGTCGTGCATGGGTGAACATCCTGAATCATGTATTGGCACAAGCCCGCGAAAAGGCCAGGCCTGAAAACTCATCGTCgggg < 1:246559/150‑1 (MQ=255) cGATGATC‑TCGAACAGCGAGCGGATCGCCAGTTGCCGTACCTGGGGGTAGTCCTTGAGGCTGTCGCTGTCGTGCATGGGTGAACATCCTGAATCATGTATTGGCACAAGCCCGCGAAAAGGCCAGGCCTGAAAACTCATCGTCGGGGGTc > 1:1321583/1‑150 (MQ=255) tgatC‑TCGAACAGCGAGCGGATCGCCAGTTGCCGTAc > 2:2152343/1‑37 (MQ=255) tgatC‑TCGAACAGCGAGCGGATCGCCAGTTGCCGTAc < 1:2152343/37‑1 (MQ=255) | CATCAGGCTGCCGGGGATCACTGTTTCGCACGGCTGGCCGATGGCACTGGCAGCGTCGGCCAGGCCAAAGCGTCGGGCGTAGCGTTCGTTCATCCAGACGA‑TGCGTGCCTGGCGGTCGACGATCACCGTGCCCTCGCTGGACTGTTCGATGATC‑TCGAACAGCGAGCGGATCGCCAGTTGCCGTACCTGGGGGTAGTCCTTGAGGCTGTCGCTGTCGTGCATGGGTGAACATCCTGAATCATGTATTGGCACAAGCCCGCGAAAAGGCCAGGCCTGAAAACTCATCGTCGGGGGTCAAA > NC_002947/3460120‑3460418 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |