| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 4,934,883 | Δ1 bp | 5.1% | coding (1752/2130 nt) | flhA ← | flagellar export pore protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 4,934,883 | 0 | C | . | 5.1% | 380.8 / 13.6 | 117 | coding (1752/2130 nt) | flhA | flagellar export pore protein |
| Reads supporting (aligned to +/- strand): ref base C (56/55); new base . (3/3); total (59/58) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.94e-01 | |||||||||||
Only 100 of 121 total aligned reads displayed.
ACCGTCTTCCTGACCCTGCCCGGCCCTTTGCAGACTATTCAGCAAAATCTGTTCCAACCTTGGCTCCAGGGTAATCACTGGTAGCTCCGACTCAACGCCGACAATGCTTTGCACGATGGCGCGACACAATCCGACGCGCACCGCCGCCACCAGTG‑CGGCGGTATCTTGACTCTTGCCCGCGTTGTTCGCGATGGCCTCGGCAATACTGCGAATATCGCGCACTGGCACCTGTTCCGACAACAGGGCTTGCAGCACCTTGAGCAGCCCCGACAAGGAAATGACACCCGGCACCAG > NC_002947/4934736‑4935029 | ccGTCTTCCTGACCCTGCCCGGCCCTTTGCAGACTATTCAGCAAAATCTGTTCCAACCTTGGCTCCAGGGTAATCACTGGTAGCTCCGACTCAACGCCGACAATGCTTTGCACGATGGCGCGACACAATCCGACGCGCACCGCCGccacc > 2:1521006/1‑150 (MQ=255) cGTCTTCCTGACCCTGCCCGGCCCTTTGCAGACTATTCAGCAAAATCTGTTCCAACCTTGGCTCCAGGGTACTCACGTGTAGCTCCGACTCAAAGCAAAAAGTGCGGTAGGTGTGTGCTCTACACAATCCGACGCGCACCGCCGccacca > 1:541295/1‑150 (MQ=255) tCCTGACCCTGCCCGGCCCTTTGCAGACTATTCAGCAAAATCTGTTCCAACCTTGGCTCCAGGGTAATCACTGGTAGCTCCGACTCAACGCCGACAATGCTTTGCACGATGGCGCGACACAATCCGACGCGCACCGCCGCCACCAGTg‑cg > 1:1174819/1‑150 (MQ=255) cTGACCCTGCCCGGCCCTTTGCAGACTATTCAGCAAAATCTGTTCCAACCTTGGCTCCAGGGTAATCACTGGTAGCTCCGACTCAACGCCGACAATGCTTTGCACGATGGCGCGACACAATCCGACGCGCACCGCCGCCACCAGTg‑cggc < 1:2035771/150‑1 (MQ=255) gtgccgggtgtcatttccttgtcggggctgctcaaggtgctccaagccctgttgtcggaacaggtgccagtgcgcgatattcgcagtattgccgaggccatcgcgaacaacgcgggcaagagtcaagaTACCGCC‑‑‑ACCAGTG‑CGGCGGTa > 1:3361‑M1/129‑150 (MQ=255) gACCCTGCCCGGCCCTTTGCAGACTATTCAGCAAAATCTGTTCCAACCTTGGCTCCAGGGTAATCACTGGTAGCTCCGACTCAACGCCGACAATGCTTTGCACGATGGCGCGACACAATCCGACGCGCACCGCCGCCACCAGTG‑cggcgg > 1:2330729/1‑150 (MQ=255) cccTGCCCGGCCCTTTGCAGACTATTCAGCAAAATCTGTTCCAACCTTGGCTCCAGGGTAATCACTGGTAGCTCCGACTCAACGCCGACAATGCTTTGCACGATGGCGCGACACAATCCGACGCGCATCGCCGCCACCAGTG‑CGGCGGTa < 1:2231483/150‑1 (MQ=255) ccTGCCCGGCCCTTTGCAGACTATTCAGCAAAATCTGTTCCAACCTTGGCTCCAGGGTAATCACTGGTAGCTCCGACTCAACGCCGACAATGCTTTGCACGATGGCGCGACACAATCCGACGCGCACCGCCGCCACCAGta > 1:1060820/1‑140 (MQ=255) ccTGCCCGGCCCTTTGCAGACTATTCAGCAAAATCTGTTCCAACCTTGGCTCCAGGGTAATCACTGGTAGCTCCGACTCAACGCCGACAATGCTTTGCACGATGGCGCGACACAATCCGACGCGCACCGCCGCCACCAGta < 2:1060820/141‑2 (MQ=255) ccTGCCCGGCCCTTTGCAGACTATTCAGCAAAATCTGTTCCAACCTTGGCTCCAGGGTAATCACTGGTAGCTCCGACTCAACGCCGACAATGCTTTGCACGATGGCGCGACACAATCCGACGCGCACCGCCGCCACCAGTG‑CGGCGGTAt > 2:1992442/1‑150 (MQ=255) gCCCGGCCCTTTGCAGACTATTCAGCAAAATCTGTTCCAACCTTGGCTCCAGGGTAATCACTGGTAGCTCCGACTCAACGCCGACAATGCTTTGCACGATGGCGCGACACAATCCGACGCGCACCGCCGCCACCAGTG‑CGGCGGTATCtt > 1:1817969/1‑150 (MQ=255) ccGGCCCTTTGCAGACTATTCAGCAAAATCTGTTCCAACCTTGGCTCCAGGGTAATCACTGGTAGCTCCGACTCAACGCCGACAATGCTTTGCACGATGGCGCGACACAATCCGACGCGCACCGCCGCCACCAGTG‑CGGCGGTATCTTGa > 2:1239653/1‑150 (MQ=255) ccTTTGCAGACTATTCAGCAAAATCTGTTCCAACCTTGGCTCCAGGGTAATCACTGGTAGCTCCGACTCAACGCCGACAATGCTTTGCACGATGGCGCGACACAATCCGACGCGCACCGCCGCCACCAGTG‑CGGCGGTATCTTGACTCtt > 1:1085881/1‑150 (MQ=255) cTTTGCAGACTATTCAGCAAAATCTGTTCCAACCTTGGCTCCAGGGTAATCACTGGTAGCTCCGACTCAACGCCGACAATGCTTTGCACGATGGCGCGACACAATCCGACGCGCACCGCCGCCACCAGTG‑CGGCGGTATCTTGACTCTTg < 1:1694013/150‑1 (MQ=255) cAGCAAAATCTGTTCCAACCTTGGCTCCAGGGTAATCACTGGTAGCTCCGACTCAACGCCGACAATGCTTTGCACGATGGCGCGACACAATCCGACGCGCACCGCCGCCACCAGTG‑CGGGGGTAGGTTGACTCTTGCCCGCGTTGTTcgc < 2:93202/150‑1 (MQ=255) cAGCAAAATCTGTTCCAACCTTGGCTCCAGGGTAATCACTGGTAGCTCCGACTCAACGCCGACAATGCTTTGCACGATGGCGCGACACAATCCGACGCGCACCGCCGCCACCAGTG‑CGGCGGTATCTTGACTCTTCCCCACcttgtcctt < 2:1800608/150‑5 (MQ=255) gCAAAATCTGTTCCAACCTTGGCTCCAGGGTAATCACTGGTAGCTCCGACTCAACGCCGACAATGCTTTGCACGATGGCGCGACACAATCCGACGCGCACCGCCGCCACCAGTG‑CGGCGGTATCTTGACTCTTGCCCGCGTTGTTCGCGa < 2:1085881/150‑1 (MQ=255) cAAAATCTGTTCCAACCTTGGCTCCAGGGTAATCACTGGTAGCTCCGACTCAACGCCGACAATGCTTTGCACGATGGCGCGACAC‑ATCCGACGCGCACCGCCGCCACCAGTG‑CGGCGGTATCTTGACTCTTGCCCGCGTTGTTCGCGATg > 1:1798293/1‑150 (MQ=255) ggtgctgcaagccctgttgtcggaacaggtgccagtgcgcgatattcgcagtattgccgaggccatcgcgaacaacgcgggcaagagtcaagaTACCGCCGCCACCAGTG‑CGGCGGTATc > 1:32074‑M1/94‑120 (MQ=255) ggtgctgcaagccctgttgtcggaacaggtgccagtgcgcgatattcgcagtattgccgaggccatcgcgaacaacgcgggcaagagtcaagaTACCGCCGCCACCAGTG‑CGGCGGTATc < 2:32074‑M1/27‑1 (MQ=255) aaCCTTGGCTCCAGGGTAATCACTGGTAGCTCCGACTCAACGCCGACAATGCTTTGCACGATGGCGCGACACAATCCGACGCGCACCGCCGCCACCAGTG‑CGGCGGTATCTTGACTCTTGCCCGCGTTGTTCGCGATGGCCTCGGCAATa < 2:1173031/150‑1 (MQ=255) aaCCTTGGCTCCAGGGTAATCACTGGTAGCTCCGACTCAACGCCGACAATGCTTTGCACGATGGCGCGACACAATCCGACGCGCACCGCCGCCACCAGTG‑CGGCGGTATCTTGACTCTTGCCCGCGTTGTTCGCGATGGCCTCGGCAATa > 1:1216279/1‑150 (MQ=255) aaCCTTGGCTCCAGGGTAATCACTGGTAGCTCCGACTCAACGCCGACAATGCTTTGCACGATGGCGCGACACAATCCGACGCGCACCGCCGCCACCAGTG‑CGGCGGTATCTTGACTCTTGCCCGCGTTGTTCGCGATGGCCTCGGCAATa < 2:1174819/150‑1 (MQ=255) aCCTTGGCTGCAGGGTAATCACTGGTAGCTCCGACTCAACGCCGACAATGCTTTGCACGATGGCGCGACACAATCCGACGCGCACCGCCGCCACCAGTG‑CGGCGGTATCTTGACTCTTGCCCGCGTTGTTCGCGATGGCCTCGGCAATAc > 1:439330/1‑150 (MQ=255) cTTGGCTCCAGGGTAATCACTGGTAGCTCCGACTCACCGCCGACAATGCTTTGCACGATGGCGCGACACAATCCGACGCGCACCGCCGCCACCAGTG‑CGGCGGTATCTTGACTCTTGCCCGCGTTGTTCGCGATGGCCTCGGCAATACTg < 1:1234940/150‑1 (MQ=255) ttGGCTCCAGGGTAATCACTGGTAGCTCCGACTCAACGCCGACAATGCTTTGCACGATGGCGCGACACAATCCGACGCGCACCGCCGCCACCAGTG‑CGGCGGTATCTTGACTCTTGCCCGCGTTGTTCGCGATGGCCTCGGCAATACta < 1:763967/149‑2 (MQ=255) ttGGCTCCAGGGTAATCACTGGTAGCTCCGACTCAACGCCGACAATGCTTTGCACGATGGCGCGACACAATCCGACGCGCACCGCCGCCACCAGTG‑CGGCGGTATCTTGACTCTTGCCCGCGTTGTTCGCGATGGCCTCGGCAATACta > 2:763967/1‑148 (MQ=255) ttGGCTCCAGGGTAATCACTGGGAGCTCCGACTCAACGCCGAGAATGCTTTGCACGATGGCGCGACACAATCCGACGCGCACCGCCGCCACCAGTG‑CGGCGGTATCTGGAGTCTTGCCCGCGTTGTTCGCGATGGCCTCGGCAATACTGc < 2:851058/150‑1 (MQ=255) gCTCCAGGGTAATCACTGGTAGCTCCGACTCAACGCCGACAATGCTTTGCACGATGGCGCGACACAATCCGACGCGCACCGCCGCCACCAGTG‑CGGCGGTATCTTGACTCTTGCCCGCGTTGTTCGCGATGGCCTCGGCAATACTGCGaa < 2:968992/150‑1 (MQ=255) tCCAGGGTAATCACTGGTAGCTCCGACTCAACGCCGACAATGCTTTGCACGATGGCGCGACACAATCCGACGCGCACCGCCGCCACCAGTG‑CGGCGGTATCTTGACTCTTGCCCGCGTTGTTCGCGATGGCCTCGGCAATACTGCGAata > 2:1337629/1‑150 (MQ=255) tCCAGGGTAATCACTGGTAGCTCCGACTCAACGCCGACAATGCTTTGCACGATGGCGCGACACAATCCGACGCGCACCGCCGCCACCAGTG‑CGGCGGTATCTTGACTCTTGCCCGCGTTGTTCGCGATGGCCTCGGCAATACTGCGAata > 1:116262/1‑150 (MQ=255) cAGGGTAATCACTGGTAGCTCCGCATCCACTCCGACAATGCTTTGCACGATGGCGCGACACAATCCGACGCGCAACGCCGCCACCAGTG‑CGGCGCTATCTTCGCTCCGGCCCGCGTTGTTCGCGATGGCCTCGGCAATACTGCGAATATc < 1:420827/150‑1 (MQ=255) cAGGGTAATCACTGGTAGCTCCGACTCAACGCCGACAATGCTTTGCACGATGGCGCGACACAATCCGACGCGCACCGCCGCCACCAGTG‑CGGCGGTATCTTGACTCTTGCCCGCGTTGTTCGCGATGGCCTCGGCAATACTGCGAATATc < 1:1337629/150‑1 (MQ=255) cAGGGTAATCACTGGTAGCTCCGACTCAACGCCGACAATGCTTTGCACGATGGCGCGACACAATCCGACGCGCACCGCCGCCACCAGTG‑CGGCGGTATCTTGACTCTTGCCCGCGTTGTTCGCGATGGCCTCGGCAATACTGCGAATATc < 2:1216279/150‑1 (MQ=255) gaacaggtgccagtgcgcgatattcgcagtattgccgaggccatcgcgaacaacgcgggcaagagtcaagaTACCGCCGCCACCAGTG‑CGGCGGTATc < 2:180364‑M1/27‑1 (MQ=255) gaacaggtgccagtgcgcgatattcgcagtattgccgaggccatcgcgaacaacgcgggcaagagtcaagaTACCGCCGCCACCAGTG‑CGGCGGTATc > 1:180364‑M1/72‑98 (MQ=255) aGGGTAATCACTGGTAGCTCCGACTCAACGCCGACAATGCTTTGCACGATGGCGCGACACAATCCGACGCGCACCGCCGCCACCAGTG‑CGGCGGTATCTTGACTCTTGCCCGCGTTGTTCGCGATGGCCTCGGCAATACTg < 2:132969/141‑1 (MQ=255) aGGGTAATCACTGGTAGCTCCGACTCAACGCCGACAATGCTTTGCACGATGGCGCGACACAATCCGACGCGCACCGCCGCCACCAGTG‑CGGCGGTATCTTGACTCTTGCCCGCGTTGTTCGCGATGGCCTCGGCAATACTg > 1:132969/1‑141 (MQ=255) aGGGTAATCACTGGTAGCTCCGACTCAACGCCGACAATGCTTTGCACGATGGCGCGACACAATCCGACGCGCACCGCCGCCACCAGTG‑CGGCGGTATCTTGACTCTTGCCCGCGTTGTTCGCGATGGCCTCGGCAATACTGCGAATATcg > 1:567551/1‑150 (MQ=255) aGGGTAATCACTGGTAGCTCCGACTCAACGCCGACAATGCTTTGCACGATGGCGCGACACAATCCGACGCGCACCGCCGCCACCAGTG‑CGGCGGTATCTTGACTCTTGCCCGCGTTGTTCGCGATGGCCTCGGCAATACTGCGAATATcg > 2:2279580/1‑150 (MQ=255) aGGGTAATCACTGGTAGCTCCGACTCAACGCCGACAATGCTTTGCACGATGGCGCGACACAATCCGACGCGCACCGCCGCCACCAGTG‑CGGCGGTATCTTGACTCTTGCCCGCGTTGTTCGCGATGGCCTCGGCAATACTGCGAATATcg > 2:39888/1‑150 (MQ=255) ggTAATCACTGGTAGCTCCGACTCAACGCCGACAATGCTTTGCACGATGGCGCGACACAATCCGACGCGCACCGCCGCCACCAGTG‑CGGCGGTATCTTGACTCTTGCCCGCGTTGTTCGGCTTGGCCTCGGCAATACTGCGAATATcgcg < 1:1872877/150‑1 (MQ=255) gTAATCACTGGTAGCTCCGACTCAACGCCGACAATGCTTTGCACGATGGCGCGACACAATCCGACGCGCACCGCCGCCACCAGTG‑CGGCGGTATCTTGACTCTTGCCCGCGTTGTTCGCGATGGCCTCGGCAATACTGCGGATATCgcgc > 2:111142/1‑150 (MQ=255) gTAATCACTGGTAGCTCCGACTCAACGCCGACAATGCTTTGCACGATGGCGCGACACAATCCGACGCGCACCGCCGCCACCAGTG‑CGGCGGTATCTTGACTCTTGCCCGCGTTGTTCGCGATGGCCTCGGCAATACTGCGAATATCgcgc > 1:2075408/1‑150 (MQ=255) aCTGGTAGCTCCGACTCAACGCCGACAATGCTTTGCACGATGGCGCGACACAATCCGACGCGCACCGCCGCCACCAGTG‑CGGCGGTATCTTGACTCTTGCCCGCgtt < 2:1439561/107‑1 (MQ=255) aCTGGTAGCTCCGACTCAACGCCGACAATGCTTTGCACGATGGCGCGACACAATCCGACGCGCACCGCCGCCACCAGTG‑CGGCGGTATCTTGACTCTTGCCCGCgtt > 1:1439561/1‑107 (MQ=255) tGGTAGCTCCGACTCAACGCCGACAATGCTTTGCACGATGGCGCGACACAATCCGACGCGCACCGCCGCCACCAGTG‑CGGCGGTATCTTGACTCTTGCCCGCGTTGTTCGCGATGGCCTCGGCAATACTGCGAATATCGCGCACTGGCAc < 2:768476/150‑1 (MQ=255) tGGTAGCTCCGACTCAACCCCGACAATCCTTTGCACGATGGCGCGACACAATCCGACGCGCACCGCCGCCACCAGTG‑CGGCGGTATCCTGACTCTTGCCAGCGTTGTTCGCGATGGCCTCGGCAATACTGCGAATATCGCGCACTGGCAc < 1:49241/150‑1 (MQ=255) gTAGCTCCGACTCAACGCCGACAATGCTTTGCACGATGGCGCGACACAATCCGACGCGCACCGCCGCCACCAGTG‑CGGCGGTATCtt < 1:630215/87‑1 (MQ=255) gTAGCTCCGACTCAACGCCGACAATGCTTTGCACGATGGCGCGACACAATCCGACGCGCACCGCCGCCACCAGTG‑CGGCGGTATCtt > 2:630215/1‑87 (MQ=255) gTAGCTCCGACTCAACGCCGACAATGCTTTGCACGATGGCGCGACACAATCCGACGCGCACCGCCGCCACCAGTG‑CGGCGGTATCTTGACTCTTGCCCGCGTTGTTCGCGATGGCCTCGGCAATACTGCGAATATCGCGCACTGGCACCt > 2:236907/1‑150 (MQ=255) gTAGCTCCGACTCAACGCCGACAATGCTTTGCACGATGGCGCGACACAATCCGACGCGCACCGCCGCCACCAGTG‑CGGCGGTATCTTGACTCTTGCCCGCGTTGTTCGCGATGGCCTCGGCAATACTGCGAATATCGCGCACTGGCACCt > 1:1716464/1‑150 (MQ=255) cTCCGACTCAACGCCGACAATGCTTTGCACGATGGCGCGACACAATCCGACGCGCACCGCCGCCACCAGTG‑CGGCGGTATCTTGACTCTTGCCCGCGTTGTTCGCGATGGCCTCGGCAATACTGCGAATATCGCGCACTGGCACCTGTTc < 1:1239653/150‑1 (MQ=255) tCAACGCCGACAATGCTTTGCACGATGGCGCGACACAATCCGACGCGCACCGCCGCCACCAGTG‑CGGCGGTATCTTGACTCTTGCCCGCGTTGTTCGCGATGGCCTCGGCAATACTGCGAATATcgcg < 2:534142/128‑1 (MQ=255) tCAACGCCGACAATGCTTTGCACGATGGCGCGACAC‑ATCCGACGCGCACCGCCGCCACCAGTG‑CGGCGGTATCTTGACTCTTGCCCGCGTTGTTCGCGATGGCCTCGGCAATACTGCGAATATCGCGCACTGGCACCTGTTCCGacaaca < 2:1798293/150‑1 (MQ=255) gCCGACAATGCTTTGCACGATGGCGCGACACAATCCGACGCGCACCGCCGCCACCAGTG‑CGGCGGTATCTTGACTCTTGCCCGCGTTGTTCGCGATGGCCTCGGCAATACTGCGAATATCGCGCACTGGCACCTGTTCCGACAACAgg > 2:1277131/1‑148 (MQ=255) gCCGACAATGCTTTGCACGATGGCGCGACACAATCCGACGCGCACCGCCGCCACCAGTG‑CGGCGGTATCTTGACTCTTGCCCGCGTTGTTCGCGATGGCCTCGGCAATACTGCGAATATCGCGCACTGGCACCTGTTCCGACAACAGGGc > 2:1554748/1‑150 (MQ=255) gACAATGCTTTGCACGATGGCGCGACACAGTCCGACGCTCACCGCCGCCACCAGTG‑CGGCGGTAGCTCCCCTGAGGCCCGCGTTGTTCGCGATGGCCTCGGCAATACTGCGAATATCGCGCACTGGCACCTGTTCCGACAACAGGGCTTg < 1:419685/150‑1 (MQ=255) aCAATGCTTTGCACGATGGCGCGACACAATCCGACGCGCACCGCCGCCACCAGTG‑CGGCGGTATCTTGACTCTTGCCCGCGTTGTTCGCGATGGCCTCGGCAATACTGCGAATATcgc < 2:1612707/118‑1 (MQ=255) aCAATGCTTTGCACGATGGCGCGACACAATCCGACGCGCACCGCCGCCACCAGTG‑CGGCGGTATCTTGACTCTTGCCCGCGTTGTTCGCGATGGCCTCGGCAATACTGCGAATATcgc > 1:1612707/1‑118 (MQ=255) aaTGCTTTGCACGATGGCGCGACACAATCCGACGCGCACCGCCGCCACCAGTG‑CGGCGGTATCTTGACTCTTGCCCGCGTTGTTCGCGATGGCCTCGGCAATACTGCGAATATCGCGCACTGGCACCTGTGCCGACAACAGGGCTTgcag > 2:267927/1‑150 (MQ=255) aTGCTTTGCACGATGGCGCGACACAATCCGACGCGCACCGCCGCCACCAGTG‑CGGCGGTATCTTGACTCTTGCCCGCGTTGTTCGCGATGGCCTCGGCAATACTGCGAATATCGCGCACTGGCACCTGTTCCGACAACAGGGCTTgcagc > 2:1579671/1‑150 (MQ=255) cTTTGCACGATGGCGCGACACAATCCGACGCGCACCGCCGCCACCAGTG‑CGGCGGTATCTTGACTCTTGCCCGCGTTGTTCGCGATGGCCTCgg < 2:1740346/94‑1 (MQ=255) cTTTGCACGATGGCGCGACACAATCCGACGCGCACCGCCGCCACCAGTG‑CGGCGGTATCTTGACTCTTGCCCGCGTTGTTCGCGATGGCCTCGGCAATACTGCGAATATCGCGCACTGGCACCTGTTCCGACAACAGGGCTTGCAGCAcc > 1:78456/1‑150 (MQ=255) cTTTGCACGATGGCGCGACACAATCCGACGCGCACCGCCGCCACCAGTG‑CGGCGGTATCTTGACTCTTGCCCGCGTTGTTCGCGATGGCCTCGGCAATACTGCGAATATCGCGCACTGGCACCTGTTCCGACAACAGGGCTTGCAGCAcc < 1:267927/150‑1 (MQ=255) tttGCACGATGGCGCGACACAATCCGACGCGCACCGCCGCCACCAGTG‑CGGCGGTATCTTGAc > 2:2234629/1‑63 (MQ=255) tttGCACGATGGCGCGACACAATCCGACGCGCACCGCCGCCACCAGTG‑CGGCGGTATCTTGAc < 1:2234629/63‑1 (MQ=255) tttGCACGATGGCGCGACACAATCCGACGCGCACCGCCGCCACCAGTG‑CGGCGGTATCTTGACTCTTGCCCGCGTTGTTCGCGATGGCCTCGGCAATACTGCGAATATCGCGCACTGGCACCTGTTCCGACAACAGGGCTTGCAGCACCt > 1:1009403/1‑150 (MQ=255) gCACGATGGCGCGACACAATCCGACGCGCACCGCCGCCACCAGTG‑CGGCGGTATCTTGACTCTTGCCCGCGTTGTTCGCGATGGCCTCGGCAATACTGCGAATATCGCGCACTGGCACCTGTTCCGACAACAGGGCTTGCAGCACCTTGa > 1:145718/1‑150 (MQ=255) gCACGATGGCGCGACACAATCCGACGCGCACCGCCGCCACCAGTG‑CGGCGGTATCTTGACTCTTGCCCGCGTTGTTCGCGATGGCCTCGGCAATACTGCGAATATCGCGCACTGGCACCTGTTCCGACAACAGGGCTTGCAGCACCTTGa < 1:2279580/150‑1 (MQ=255) cACGATGGCGCGACACAATCCGACGCGCACCGCCGCCACCAGTG‑CGGCGGTATCTTGACTCTTGCCCGCGTTGTTcgc < 1:956545/78‑1 (MQ=255) cACGATGGCGCGACACAATCCGACGCGCACCGCCGCCACCAGTG‑CGGCGGTATCTTGACTCTTGCCCGCGTTGTTcgc > 2:956545/1‑78 (MQ=255) cACGATGGCGCGACACAATCCGACGCGCACCGCCGCCACCAGTG‑CGGCGGTATCTTGACTCTTGCCCGCGTTGTTCGCGATGGCCTCGGCAATACTGCGAATATCGCGCACTGGCACCTGTTCCGACAACAGGGCTTGCAGCACCTTGag < 2:1606463/150‑1 (MQ=255) aCGATGGCGCGACACAATCCGACGCGCACCGCCGCCACCAGTG‑CGGCGGTATCTTGACTCTTGCCCGCGTTGTTCGCGATGGCCTCGGCAATACTGCGAATATCGCGCACTGGCa > 2:1245423/1‑115 (MQ=255) aCGATGGCGCGACACAATCCGACGCGCACCGCCGCCACCAGTG‑CGGCGGTATCTTGACTCTTGCCCGCGTTGTTCGCGATGGCCTCGGCAATACTGCGAATATCGCGCACTGGCa < 1:1245423/115‑1 (MQ=255) gATGGCGCGACACAATCCGACGCGCACCGCCGCCACCAGTG‑CGGCGGTATCTTTACTCTTGCCCGCGTTGTTCGCGATGGCCTCGGCAATACTGCGAATATCGCGCACTGGCACCTGTTCCGACAACAGGGCTTGCAGCACCTTGagcag > 1:2108375/1‑150 (MQ=255) gATGGCGCGACACAATCCGACGCGCACCGCCGCCACCAGTG‑CGGCGGTATCTTGACTCTTGCCCGCGTTGTTCGCGATGGCCTCGGCAATACTGCGAATATCGCGCACTGGCACCTGTTCCGa > 1:835092/1‑123 (MQ=255) aacaacgcgggcaagagtcaagaTACCGCCGC‑ACTGGTGGCGGCGGTGTCTTGACTCTTGCCCGCGTTGTTCGCGATGGCCTCGGCAATACTGCGAATATCGCGCACTGGCACCTGTTCCGACAACAGGGc > 1:2282261‑M1/24‑131 (MQ=255) aacaacgcgggcaagagtcaagaTACCGCCGC‑ACTGGTGGCGGCGGTGTCTTGACTCTTGCCCGCGTTGTTCGCGATGGCCTCGGCAATACTGCGAATATCGCGCACTGGCACCTGTTCCGACAACAGGGc < 2:2282261‑M1/108‑1 (MQ=255) aacgcgggcaagagtcaagaTACCGCCGC‑ACTGGTGGCGGCGGTGTCTTGACTCTTGCCCGCGTTGTTCGCGATGGCCTCGGCAATACTGCGAATATCGCGCACTGGCACCTGTTCCGACAACAGGGCTTGCAGCACCTTGAGCAGcccc < 1:275269‑M1/130‑1 (MQ=255) gACACAATCCGACGCGCACCGCCGCCACCAGTG‑CGGCGGTATCTTGACTCTTGCCCGCGTTGTTCGCGATGGCCTCGGCAATACTGCGAATATCGCGCACTGGCACCTGTTCCGACAACAGGGCTTGCAGCACCTTGAGCAGCCCCGACa > 2:1415785/1‑150 (MQ=255) gACACAATCCGACGCGCACCGCCGCCACCAGTG‑CGGCGGTATCTTGACTCTTGCCCGCGTTGTTCGCGATGGCCTCGGCAATACTGCGAATATCGCGCACTGGCACCTGTTCCGACAACAGGGCTTGCAGCACCTTGAGCAGCCCCGACa > 2:1642670/1‑150 (MQ=255) cacaATCCGACGCGCACCGCCGCCACCAGTG‑CGGCGGTATCTTGACTCTTGCCCGCGTTGTTCGCGATGGCCTCGGCAATACTGCGAATATCGCGCACTGGCACCTGTTCCGACAACAGGGCTTGCAGCACCTTGAGCAGCCCCGACAAg < 2:1336028/150‑1 (MQ=255) acaATCCGACGCGCACCGCCGCCACCAGTG‑CGGCGGTATCTTGACTCTTGCCCGCGTTGTTCGCGATGGCCTCGGCAATACTGCGAATATCGCGCACTGGCACCTGTTCCGACAACAGGGCTTGCAGCACCTTGAGCAGCCCCGACAAgg > 2:1855628/1‑150 (MQ=255) acaATCCGACGCGCACCGCCGCCACCAGTG‑CGGCGGTATCTTGACTCTTGCCCGCGTTGTTCGCGATGGCCTCGGCAATACTGCGAATATCGCGCACTGGCACCTGTTCCGACAACAGGGCTTGCAGCACCTTGAGCAGCCCCGACAAgg > 1:1725273/1‑150 (MQ=255) aaTCCGACGCGCACCGCCGCCACCAGTG‑CGGCGGTATCTTGACTCTTGCCCGCGTTGTTCGCGATGGCCTCGGCAATACTGCGAATATCGCGCACTGGCACCTGTTCCGACAACAGGGCTTGCAGCACCTTGAGCAGCCCCGACAAGGaa > 2:1605933/1‑150 (MQ=255) tCCGACGCGCACCGCCGCCACCAGTG‑CGGCGGTATCTTGACTCTTGCCCGCGTTGTTCGCGATGGCCTCGGCAATACTGCGAATATCGCGCACTGGCACCTGTTCCGACAACAGGGCTTGCAGCACCTTGAGCAGCCCCGACAAGGAAAt < 1:1642670/150‑1 (MQ=255) tCCGACGCGCACCGCCGCCACCAGTG‑CGGCGGTATCTTGACTCTTGCCCGCGTTGTTCGCGATGGCCTCGGCAATACTGCGAATATCGCGCACTGGCACCTGTTCCGACAACAGGGCTTGCAGCACCTTGAGCAGCCCCGACAAGGAAAt > 2:551650/1‑150 (MQ=255) tCCGACGCGCACCGCCGCCACCAGTG‑CGGCGGTATCTTGACTCTTGCCCGCGTTGTTCGCGATGGCCTCGGCAATACTGCGAATATCGCGCACTGGCACCTGTTCCGACAACAGGGCTTGCAGCACCTTGAGCAGCCCCGACAAGGAAAt < 2:2075408/150‑1 (MQ=255) cGACGCGCACCGCCGCCACCAGTG‑CGGCGGTATCTTGACTCTTGCCCGCGTTGTTCGCGATGGCCTCGGCAATACTGCGAATATCGCGCACTGGCACCTGTTCCGACAACAGGGCTTGCAGCACCTTGAGCAGCCCCGACAAGGAAATGa < 2:567551/150‑1 (MQ=255) gACGCGCACCGCCGCCACCAGTG‑CGGCGGTATCTTGACTCTTGCCCGCGTTGTTCGCGATGGCCTCGGCAATACTGCGAATATCGCGCACTGGCACCTGTTCCGACAACAGGGc > 1:1796937/1‑114 (MQ=255) gACGCGCACCGCCGCCACCAGTG‑CGGCGGTATCTTGACTCTTGCCCGCGTTGTTCGCGATGGCCTCGGCAATACTGCGAATATCGCGCACTGGCACCTGTTCCGACAACAGGGc < 2:1796937/114‑1 (MQ=255) cgcgCACCGCCGCCACCAGTG‑CGGCGGTATCTTGACTCTTGCCCGCGTTGTTCGCGATGGCCTCGGCAATACTGCGGATATCGCGCACTGGCACCTGTTCCGACAACAGGGCTTGCAGCACCTTGAGCAGCCCCGACAAGGAAATGacac < 1:111142/150‑1 (MQ=255) aagaCACCGCCGC‑ACTGGTGGCGGCGGTGTCTTGACTCTTGCCCGCGTTGTTCGCGATGGCCTCGGCAATACTGCGaa > 1:1976286‑M1/5‑78 (MQ=255) aagaCACCGCCGC‑ACTGGTGGCGGCGGTGTCTTGACTCTTGCCCGCGTTGTTCGCGATGGCCTCGGCAATACTGCGaa < 2:1976286‑M1/74‑1 (MQ=255) gcgcACCGCCGCCACCAGTG‑CGGCGGTATCTTGACTCTTGCCCGCGTTGTTCGCGATGGCCTCGGCAATACTGCGAATATCGCGCACTGGCACCTGTTCCGACAACAGGGCTTGCAGCACCTTGAGCAGCCCCGACAAGGAAATGACAcc < 1:1521006/150‑1 (MQ=255) cACCGCCGCCACCAGTG‑CGGCGGTATCTTGACTCTTGCCCGCGTTGTTCGCGATGGCCTCGGCAATACTGCGAATATCGCGCACTGGCACCTGTTCCGacaaca > 2:2401324/1‑104 (MQ=255) cACCGCCGCCACCAGTG‑CGGCGGTATCTTGACTCTTGCCCGCGTTGTTCGCGATGGCCTCGGCAATACTGCGAATATCGCGCACTGGCACCTGTTCCGacaaca < 1:2401324/104‑1 (MQ=255) cgccgcCACCAGTG‑CGGCGGTATCTTGACTCTTGCCCGCGTTGTTCGCGATGGCCTCGGCAATACTGCGAATATCGCGCACTGGCACCTGTTCCGACAACAGGGCTTGCAGCACCTTGAGCAGCCCCGACAAGGAAATGaca > 2:2337742/1‑142 (MQ=255) cgccACCAGTG‑CGGCGGTATCTTGACTCTTGCCCGCGTTGTTCGCGATGGCCTCGGCAATACTGCGAATATCGCGCACTGGCACCTGTTCCGACAACAGGGCTTGCAGCACCTTGAGCAGCCCCGACAAGGAAATGACACCCGGCACCAg < 2:1687433/150‑1 (MQ=255) | ACCGTCTTCCTGACCCTGCCCGGCCCTTTGCAGACTATTCAGCAAAATCTGTTCCAACCTTGGCTCCAGGGTAATCACTGGTAGCTCCGACTCAACGCCGACAATGCTTTGCACGATGGCGCGACACAATCCGACGCGCACCGCCGCCACCAGTG‑CGGCGGTATCTTGACTCTTGCCCGCGTTGTTCGCGATGGCCTCGGCAATACTGCGAATATCGCGCACTGGCACCTGTTCCGACAACAGGGCTTGCAGCACCTTGAGCAGCCCCGACAAGGAAATGACACCCGGCACCAG > NC_002947/4934736‑4935029 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |