| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 5,462,441 | Δ1 bp | 5.2% | intergenic (+16/+18) | PP_4798 → / ← PP_4799 | membrane‑bound lytic murein transglycosylase/muramoyltetrapeptide carboxypeptidase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,462,441 | 0 | T | . | 5.2% | 340.6 / 13.2 | 115 | intergenic (+16/+18) | PP_4798/PP_4799 | membrane‑bound lytic murein transglycosylase/muramoyltetrapeptide carboxypeptidase |
| Reads supporting (aligned to +/- strand): ref base T (54/51); new base . (2/4); total (59/56) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.38e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.26e-01 | |||||||||||
Only 100 of 117 total aligned reads displayed.
ATGATGCGGGTAATGCCGATGGCATTATCGGGGCCAATACCCGCAAGGCAATCCGCAATGCCCAGCAAGGGCTGGGATGGCCGGCGGATGGCTACCCGACCCACAAGCTGCTTGAGAGCCTGCGCCAGCAGTAAGCATTCCGGGGCCGCTGC‑GCGGCCCCGGTAATCTCACGCCCTGAACAGATCCTGCTCCAGCACCAGTGTTTGCTGAACACTGTCCAGCCTCACCCGAGCCCCCAGGGGCAAGCATACATTCGGGTCACAGTGCCCGCTGCGCCAACCCGCCAGCACCGGCACACC > NC_002947/5462292‑5462590 | atgatgCGGGTAATGCCGATGGCATTATCGGGGCCAATACCCGCAAGGCAATCCGCAATGCCCAGCAAGGGCTGGGATGGCCGGCGGATGGCTACCCGACCCACAAGCTGCTTGAGAGCCTGCGCCAGCAGTAAGCATTCCGGGGCCGCt > 2:1627533/1‑150 (MQ=255) tgCGGGTAATGCCGATGGCATTATCGGGGCCAATACCCGCAAGGCAATCCGCAATGCCCAGCAAGGGCTGGGATGGCCGGCGGATGGCTACCCGACCCACAAGCTGCTTGAGAGCCTGCGCCAGCAGTAAGCATTCCGGGGCCGCTgc‑gc < 2:1912042/150‑1 (MQ=255) ccgatAATGCCGATGGCATTATCGGGGCCAATACCCGCAAGGCAATCCGCAATGCCCAGCAAGGGCTGGGATGGCCGGCGGATGGCTACCCGACCCACAAACTGCTTGAGAGCCTGCGCCAGCAGTAAGCATTCCGGGGCCGCTGC‑GCgg > 1:142858/5‑150 (MQ=255) cGGGTAATGCCGATGGCATTATCGGGGCCAATACCCGCAAGGCAATCCGCAATGCCCAGCAAGGGCTGGGATGGCCGGCGGATGGCTACCCGACCCACAAGCTGCTTGAGAGCCTGCGCCAGCAGTAAGCATTCCGGGGCCGCTGC‑GCgg > 2:1154278/1‑150 (MQ=255) gTAATGCCGATGGCATTATCGGGGCCAATACCCGCAAGGCAATCCGCAATGCCCAGCAAGGGCTGGGATGGCCGGCGGATGGCTACCCGACCCACAAGCTGCTTGTGAGCCTGCGCCAGCAGTAAGCATTCCGGGGCCGCTGC‑GCGGccc > 2:866476/1‑150 (MQ=255) aaTGCCGATGGCATTATCGGGGCCAATACCCGCAAGGCAATCCGCAATGCCCAGCAAGGGCTGGGATGGCCGGCGGATGGCTACCCGACCCACAAGCTGCTTGAGAGCCTGCGCCAGCAGTAAGCATTCCGGGGCCGCTGC‑GCGGCCCCg > 1:2072455/1‑150 (MQ=255) aTTATCGGGGCCAATACCCGCAAGGCAATCCGCAATGCCCAGCAAGGGCTGGGATGGCCGGCGGATGGCTACCCGACCCACACGGTCCTTGAGAGCCTGCGCCAGCAGTAAGCATTCCGGGGCCGC‑GCAGCGGcccc < 1:1978702/137‑1 (MQ=255) aTTATCGGGGCCAATACCCGCAAGGCAATCCGCAATGCCCAGCAAGGGCTGGGATGGCCGGCGGATGGCTACCCGACCCACAAGCTGCTTGAGAGCCTGCGCCAGCAGTAAGCATTCCGGGGCCGCGCA‑GCGGcccc > 2:1978702/1‑137 (MQ=255) ttATCGGGGCCAATACCCGCAAGGCAATCCGCAATGCCCAGCAAGGGCTGGGATGGCCGGCGGATGGCTACCCGACCCACAAGCTGCTTGAGAGCCTGCGCCAGCAGTAAGCATTCCGGGGCCGCTGC‑GCGGCCCCGGTAATCTCACGcc < 2:710443/150‑1 (MQ=255) tCGGGGCCAATACCCGCAAGGCAATCCGCAATGCCCAGCAAGGGCTGGGATGGCCGGCGGATGGCTACCCGACCCACAAGCTGCTTGAGAGCCTGCGCCAGCAGTAAGCATTCCGGGGCCGCTGC‑GCGGCCCCGGTAATCTCACGCCCTg > 2:1932189/1‑150 (MQ=255) ggggCCAATACCCGCAAGGCAATCCGCAATGCCCAGCAAGGGCTGGGATGGCCGGCGGATGGCTACCCGACCCACAAGCTGCTTGAGAGCCTGCGCCAGCAGTAAGCATTCCGGGGCCGCTGC‑GCgg < 2:613029/127‑1 (MQ=255) ggggCCAATACCCGCAAGGCAATCCGCAATGCCCAGCAAGGGCTGGGATGGCCGGCGGATGGCTACCCGACCCACAAGCTGCTTGAGAGCCTGCGCCAGCAGTAAGCATTCCGGGGCCGCTGC‑GCgg > 1:615126/1‑127 (MQ=255) ggggCCAATACCCGCAAGGCAATCCGCAATGCCCAGCAAGGGCTGGGATGGCCGGCGGATGGCTACCCGACCCACAAGCTGCTTGAGAGCCTGCGCCAGCAGTAAGCATTCCGGGGCCGCTGC‑GCgg > 1:613029/1‑127 (MQ=255) ggggCCAATACCCGCAAGGCAATCCGCAATGCCCAGCAAGGGCTGGGATGGCCGGCGGATGGCTACCCGACCCACAAGCTGCTTGAGAGCCTGCGCCAGCAGTAAGCATTCCGGGGCCGCTGC‑GCGGCCCCGGTAATCTCACGCCCTGaa < 1:1744971/150‑1 (MQ=255) tcggcattACCCGCAAGGCAATCCGCAATGCCCAGCAAGGGCTGGGATGGCCGGCGGATGGCTACCCGACCCACAAGCTGCTTGAGAGCCTGCGCCAGCAGTAAGCATTCCGGGGCCGCTGC‑GCGGCCCCGGTAATCTCACGCCCTGAAc < 1:1045064/143‑1 (MQ=255) tcggcattACCCGCAAGGCAATCCGCAATGCCCAGCAAGGGCTGGGATGGCCGGCGGATGGCTACCCGACCCACAAGCTGCTTGAGAGCCTGCGCCAGCAGTAAGCATTCCGGGGCCGCTGC‑GCGGCCCCGGTAATCTCACGCCCTGAAc < 1:1045197/143‑1 (MQ=255) gggCCAATACCCGCAAGGCAATCCGCAATGCCCAGCAAGGGCTGGGATGGACGGAGGATGGCTACCCGACCCACAAGCTGCTTGAGAGCCTGCGCCAGCAGTAAGCATTCCGGGGCCGCTGC‑GCGGCCCCGGTAATCTCACGCCCTGAAc > 2:1791044/1‑150 (MQ=255) ccAATACCCGCAAGGCAATCCGCAATGCCCAGCAAGGGCTGGGATGGCCGGCGGATGGCTACCCGACCCACAAGCTGCTTGAGAGCCTGCGCCAGCAGTAAGCATTCCGGGGCCGCTGC‑GCGGCCCCGGTAACCTCCCGCCCTGAACAGa > 2:1035380/1‑150 (MQ=255) cAATACCCGCAAGGCAATCCGCAATGCCCAGCAAGGGCTGGGATGGCCGGCGGATGGCTACCCGACCCACAAGCTGCTTGAGAGCCTGCGCCAGCAGTAAGCATTCCGGGGCCGCTGC‑GCGGCCCCGGTAATCTCACGCCCTGAACAGAt > 1:1234437/1‑150 (MQ=255) aaTACCCGCAAGGCAATCCGCAATGCCCAGCAAGGGCTGGGATGGCCGGCGGATGGCTACCCGACCCACAAGCTGCTTGAGAGCCTGCGCCAGCAGTAAGCATTCCGGGGCCGCTGC‑GCGGCCCCGGTAATCTCACGCCCTGAACAGATc > 2:182598/1‑150 (MQ=255) aaTACCCGCAAGGCAATCCGCAATGCCCAGCAAGGGCTGGGATGGCCGGCGGATGGCTACCCGACCCACAAGCTGCTTGAGAGCCTGCGCCAGCAGTAAGCATTCCGGGGCCGCTGC‑GCGGCCCCGGTAATCTCACGCCCTGAACAGATc > 1:2312854/1‑150 (MQ=255) aaTACCCGCAAGGCAATCCGCAATGCCCAGCAAGGGCTGGGATGGCCGGCGGATGGCTACCCGACCCACAAGCTGCTTGAGAGCCTGCGCCAGCAGTAAGCATTCCGGGGCCGCTGC‑GCGGCCCCGGTAATCTCACGCCCTGAACAGATc > 1:1601750/1‑150 (MQ=255) tACCCGCAAGGCAATCCGCAATGCCCAGCAAGGGCTGGGATGGCCGGCGGATGGCTACCCGACCCACAAGCTGCTTGAGAGCCTGCGCCAGCAGTAAGCATTCCGGGGCCGCTGC‑GCGGCCCCGGTAATCTCACGCCCTGAACAGATCCt > 1:481291/1‑150 (MQ=255) aCCCGCAAGGCAATCCGCAATGCCCAGCAAGGGCTGGGATGGCCGGCGGATGGCTACCCGACCCAAAAGCTGCTTGAGAGCCTGCGCCAGCAGTAAGCATTCCGGGGCCGCTGC‑GCGGCCCCGGTAATCTCACGCCCTGAACAGATCCTg < 2:229599/150‑1 (MQ=255) ccGCAAGGCAATCCGCAATGCCCAGCAAGGGCTGGGATGGCCGGCGGATGGCTACCCGACCCACAAGCTGCTTGAGAGCCTGCGCCAGCAGTAAGCATTCCGGGGCCGCTGC‑GCGGCCCCGGTAATCTCACGCCCTGAACAGATCCTGCt > 1:1895362/1‑150 (MQ=255) cAAGGCAATCCGCAATGCCCAGCAAGGGCTGGGATGGCCGGCGGATGGCTACCCGACCCACAAGCTGCTTGAGAGCCTGCGCCAGCAGTAAGCATTCCGGGGCCGCTGC‑GCGGCCCCGGTAATCTCACGCCCTGAACAGATCCTGCTCCa < 2:2345413/150‑1 (MQ=255) aaGGCAATCCGCAATGCCCAGCAAGGGCTGGGATGGCCGGCGGATGGCTACCCGACCCACAAGCTGCTTGAGAGCCTGCGCCAGCAGTAAGCATTCCGGGGCCGCTGC‑GCGGCCCCGGTAATCTCACGCCCTGAACAGATCCTGCTCCAg < 2:573842/150‑1 (MQ=255) gCAATCCGCAATGCCCAGCAAGGGCTGGGATGGCCGGCGGATGGCTACCCGACCCACAAGCTGCTTGAGAGCCTGCGCCAGCAGTAAGCATTCCGGGGCCGCTGC‑GCGGCCCCGGTAATCTCACGCCCTGAACAGa > 2:2290472/1‑136 (MQ=255) gCAATCCGCAATGCCCAGCAAGGGCTGGGATGGCCGGCGGATGGCTACCCGACCCACAAGCTGCTTGAGAGCCTGCGCCAGCAGTAAGCATTCCGGGGCCGCTGC‑GCGGCCCCGGTAATCTCACGCCCTGAACAGATCCTGCTCCAGCAc < 1:767667/150‑1 (MQ=255) gCAATCCGCAATGCCCAGCAAGGGCTGGGATGGCCGGCGGATGGCTACCCGACCCACAAGCTGCTTGAGAGCCTGCGCCAGCAGTAAGCATTCCGCGGCCGCTGC‑GCGGCCCCGGTAATCTCACGCCCTGAACAGa < 1:2290472/136‑1 (MQ=255) cAATCCGCAATGCCCAGCAAGGGCTGGGATGGCCGGCGGATGGCTACCCGACCCACAAGCTGCTTGAGAGCCTGCGCCAGCAGTAAGCATTCCGGGGCCGCTGC‑GCGGCCCCGGTAATCTCACGCCCTGAACAGATCCTGCTCCAGCAcc < 1:567038/150‑1 (MQ=255) aaTCCGCAATGCCAAGAAAGGCCTGGGAGGTTGGGCGGATGGGTACCCGGCCCCCGAGCTGCTTGAGAGCCTTCGCCAGCATTAAGCATTCCGGGGCGGCTGC‑GCGGCCCCGGTAATCTCACGCCCTGAACAGATCCTGCTCCAGCACCa > 2:1956005/1‑150 (MQ=255) aTCCGCAATGCCCAGCAAGGGCTGGGATGGCCGGCGGATGGCTACCCGACCCACAAGCTGCTTGAGAGCCTGCGCCAGCAGTAAGCATTCCGGGGCCGCTGC‑GCGGCCCCGGTAATCTCACGCCCTGAACAGATCCTGCTCCAGCACCAg > 2:372433/1‑150 (MQ=255) tCCGCAATGCCCAGCAAGGGCTGGGATGGCCGGCGGATGGCTACCCGACCCACAAGCTGCTTGAGAGCCTGCGCCAGCAGTAAGCATTCCGGGGCCGCTGC‑GCGGCCCCGGTAAtctc < 1:1906341/118‑1 (MQ=255) tCCGCAATGCCCAGCAAGGGCTGGGATGGCCGGCGGATGGCTACCCGACCCACAAGCTGCTTGAGAGCCTGCGCCAGCAGTAAGCATTCCGGGGCCGCTGC‑GCGGCCCCGGTAAtctc > 2:1906341/1‑118 (MQ=255) aaTGCCCAGCAAGGGCTGGGATGGCCGGCGGATGGCTACCCGACCCACAAGCTGCTTGAGAGCCTGCGCCAGCAGTAAGCATTCCGGGGCCGCTGC‑GCGGCCCCGGTAATCTCACGCCCTGAACAGATCCTGCTCCAGCACCAGTGttt < 1:1327414/149‑1 (MQ=255) aaTGCCCAGCAAGGGCTGGGATGGCCGGCGGATGGCTACCCGACCCACAAGCTGCTTGAGAGCCTGCGCCAGCAGTAAGCATTCCGGGGCCGCTGC‑GCGGCCCCGGTAATCTCACGCCCTGAACAGATCCTGCTCCAGCACCAGTGttt > 2:1327414/1‑149 (MQ=255) aaTGCCCAGCAAGGGCTGGGATGGCCGGCGGATGGCTACCCGACCCACAAGCTGCTTGAGAGCCTGCGCCAGCAGTAAGCATTCCGGGGCCGC‑GCAGCGGCCCCggaat < 1:2142396/109‑4 (MQ=255) aaTGCCCAGCAAGGGCTGGGATGGCCGGCGGATGGCTACCCGACCCACAAGCTGCTTGAGAGCCTGCGCCAGCAGTAAGCATTCCGGGGCCGC‑GCAGCGGCCCCggaat > 2:2142396/1‑106 (MQ=255) aTGCCCAGCAAGGGCTGGGATGGCCGGCGGATGGCTACCCGACCCACAAGCTGCTTGAGAGCCTGCGCCAGCAGTAAGCATTCCGGGGCCGCTGC‑GCGGCCCCGGTAATCTCACGCCCTGAACAGATCCTGCTCCAGCACCAGTGTTTGc < 2:1234437/150‑1 (MQ=255) cccAGCAAGGGCTGGGATGGCCGGCGGATGGCTACCCGACCCACAAGCTGCTTGAGAGCCTGCGCCAGCAGTAAGCATTCCGGGGCCGCTGC‑GCGGCCCCGGTAATCTCACGCCCTGAACAGATCCTGCTCCAGCACCAGTGTTTGCTGa < 1:1791044/150‑1 (MQ=255) ccAGCAAGGGCTGGGATGGCCGGCGGATGGCTACCCGACCCACAAGCTGCTTGAGAGCCTGCGCCAGCAGTAAGCATTCCGGGGCCGCTGC‑GCGGCCCCGGTAATCTCACGCCCTGAACAGAt < 1:1637528/123‑1 (MQ=255) ccAGCAAGGGCTGGGATGGCCGGCGGATGGCTACCCGACCCACAAGCTGCTTGAGAGCCTGCGCCAGCAGTAAGCATTCCGGGGCCGCTGC‑GCGGCCCCGGTAATCTCACGCCCTGAACAGATCCTGCTCCAGCACCAGTGTTTGCTGaa < 1:1961685/150‑1 (MQ=255) ccAGCAAGGGCTGGGATGGCCGGCGGATGGCTACCCGACCCACAAGCTGCTTGAGAGCCTGCGCCAGCAGTAAGCATACCGGGGCCGCGCA‑GCGGCCCCgga < 1:439808/102‑2 (MQ=38) ccAGCAAGGGCTGGGATGGCCGGCGGATGGCTACCCGACCCACAAGCTGCTTGAGAGCCTGCGCCAGCAGTAAGCATACCGGGGCCGCGCA‑GCGGCCCCgga > 2:439808/1‑101 (MQ=39) agcccttgCTGGGATGGCCGGCGGATGGCTACCCGACCCACAAGCTGCTTGAGAGCCTGCGCCAGCAGTAAGCATTCCGGGGCCGCTGC‑GCGGCCCCGGTAATCTCACGCCCTGAACAGATCCTGCTCCAGCACCAGTGTTTGCTGAaca > 2:1099723/8‑150 (MQ=255) aGCAAGGGCTGGGATGGCCGGCGGATGGCTACCAGACCCACAAGCTGCTTGAGAGCCTGCGCCAGCAGTAAGCATTCCGGGGCCGCTGC‑GCGGAACCGGTAATCTCACGCCCTGAACAGATCCTGCTCCAGCACCAGTGTTTGCTGAaca < 2:1076352/150‑1 (MQ=255) gCTGGGATGGCCGGCGGATGGCTACCCGACCCACAAACTGCTTGAGAGCCTGCGCCAGCAGTAAGCATTCCGGGGCCGCTGC‑GCGGCCCCGGTAATCTCACGCCCTGAACAGATCCTGCTCCAGCACCAGTGTTTGCTGAACACTGTCCa < 2:142858/150‑1 (MQ=255) ggATGGCCGGCGGATGGCTACCCGACCCACAAGCTGCTTGAGAGTCTGCGCCAGCAGTAAGCATTCCGGGGCCGCTGC‑GCGGCCCCGGTAATCTCACGCCCTGAACAGATCCTGCTCCAGCACCAGTGTTTGCt < 2:536365/134‑1 (MQ=255) ggATGGCCGGCGGATGGCTACCCGACCCACAAGCTGCTTGAGAGTCTGCGCCAGCAGTAAGCATTCCGGGGCCGCTGC‑GCGGCCCCGGTAATCTCACGCCCTGAACAGATCCTGCTCCAGCACCAGTGTTTGCt > 1:536365/1‑134 (MQ=255) aTGGCTACCCGACCCACAAGCTGCTTGAGAGCCTGCGCCAGCAGTAAGCATTCCGGGGCCGCTGC‑GCGGCCCCGGTAATCTCACGCCCTGAACAGATCCTGCTCCAGCACCAGTGTTTGCTGAACACTGTCCAGCCTCACCCGAGccccc > 2:697111/1‑150 (MQ=255) ggCTACCCGACCCACAAGCTGCTTGAGAGCCTGCGCCAGCAGTAAGCATTCCGGGGCCGCTGC‑GCGGCCCCGGTAATCTCACGCCCTGAACAGATCCTGCTCCAGCACCAGTGTTTGCTGAACACTGTCCAGCCTCACCCGAGCCCCCAg < 2:350904/150‑1 (MQ=255) gCTACCCGACCCACAAGCTGCTTGTGAGCCTGCGCCAGCAGTAAGCATTCCGGGGCCGCTGC‑GCGGCCCCGGTAATCTCACGCCCTGAACAGATCCTGCTCCAGCACCAGTGTTTGCTGAACACTGTCCAGCCTCACCCGAGCCCCCAgg < 1:866476/150‑1 (MQ=255) tACCCGACCCACAAGCTGCTTGAGAGCCTGCGCCAGCAGTAAGCATTCCGGGGCCGCTGC‑GCGGCCCCGGTAATCTCACGCCCTGAACAGATCCTGCTCCAGCACCAGTGTTTGCTGAACACTGTCCAGCCTCACCCGAGCCCCCAgggg > 2:52875/1‑150 (MQ=255) aCCCGACCCACAAGCTGCTTGAGAGCCTGCGCCAGCAGTAAGCATTCCGGGGCCGCTGC‑GCGGCCCCGGTAATCTCACGCCCTGAACAGATCCTGCTCCAGCACCAGTGTTTGCTGAACACTGTCCAGCCTCACCCGAGCCCCCAGGGGc > 1:1094591/1‑150 (MQ=255) cccGACCCACAAGCTGCTTGAGAGCCTGCGCCAGCAGTAAGCATTCCGGGGCCGCCGC‑GCGGCCCCGGTAATCTCACGCCCTGAACAGATCCTGCTCCAGCACCAGTGTTTGCTGAACACTGTCCAGCCTCACCCGCGCGCCCAGGGGCa > 1:2161432/1‑150 (MQ=255) ccGACCCACAAGCTGCTTGAGAGCCTGCGCCAGCAGTAAGCATTCCGGGGCCGCTGC‑GCGGCCCCGGTAATCTCACGCCCt < 1:2284235/81‑1 (MQ=255) ccGACCCACAAGCTGCTTGAGAGCCTGCGCCAGCAGTAAGCATTCCGGGGCCGCTGC‑GCGGCCCCGGTAATCTCACGCCCt > 2:2284235/1‑81 (MQ=255) ccGACCCACAAGCTGCTTGAGAGCCTGCGCCAGCAGTAAGCATTCCGGGGCCGCTGC‑GCGGCCCCGGTAATCTCACGCCCTGAACAGATCCTGCTCCAGCACCAGTGTTTGCTGAACACTGTCCAGCCTCACCCGAGCCCCCAGGGGCaa < 2:2405768/150‑1 (MQ=255) cGACCCACAAGCTGCTTGAGAGCCTGCGCCAGCAGTAAGCATTCCGGGGCCGCTGC‑GCGGCCCCGGTAATCTCACGCCCTGAACAGATCCTGCTCCAGCACCAGTGTTTGCTGAACACTGTCCAGCCTCACCCGAGCCCCCAGGGGCAAg > 1:1006597/1‑150 (MQ=255) gACCCACAAGCTGCTTGAGAGCCTGCGCCAGCAGTAAGCATTCCGGGGCCGCTGC‑GCGGCCCCGGTAATCTCACGCCCTGAACAGATCCTGCTCCAGCACCAGTGTTTGCTGcaca > 2:1123220/1‑116 (MQ=255) gACCCACAAGCTGCTTGAGAGCCTGCGCCAGCAGTAAGCATTCCGGGGCCGCTGC‑GCGGCCCCGGTAATCTCACGCCCTGAACAGATCCTGCTCCAGCACCAGTGTTTGCTGAaca < 1:1123220/116‑1 (MQ=255) aCCCACAAGCTGCTTGAGAGCCTGCGCCAGCAGTAAGCATTCCGGGGCCGCTGC‑GCGGCCCCGGTAATCTCACGCCCTGAACAGATCCTGCTCCAGCACCAGTGTTTGCTGAACACTGTCCAGCCTCACCCGAGCCCCCAGGGGCAAGCa > 1:1823751/1‑150 (MQ=255) cacaAGCTGCTTGAGAGCCTGCGCCAGCAGTAAGCATTCCGGGGCCGCTGC‑GCGGCCCCGGTAATCTCACGCCCTGAACAGATCCTGCTCCAGCACCAGTGTTTGCTGAACACTGTCCAGCCTCACCCGAGCCCCCAggg < 1:1090181/140‑1 (MQ=255) cacaAGCTGCTTGAGAGCCTGCGCCAGCAGTAAGCATTCCGGGGCCGCTGC‑GCGGCCCCGGTAATCTCACGCCCTGAACAGATCCTGCTCCAGCACCAGTGTTTGCTGAACACTGTCCAGCCTCACCCGAGCCCCCAGGGGCAAg > 2:1404946/1‑145 (MQ=255) cacaAGCTGCTTGAGAGCCTGCGCCAGCAGTAAGCATTCCGGGGCCGCTGC‑GCGGCCCCGGTAATCTCACGCCCTGAACAGATCCTGCTCCAGCACCAGTGTTTGCTGAACACTGTCCAGCCTCACCCGAGCCCCCAGGGGCAAg < 1:1404946/145‑1 (MQ=255) cacaAGCTGCTTGAGAGCCTGCGCCAGCAGTAAGCATTCCGGGGCCGCTGC‑GCGGCCCCGGTAATCTCACGCCCTGAACAGATCCTGCTCCAGCACCAGTGTTTGCTGAACACTGTCCAGCCTCACCCGAGCCCCCAGGGGCAAGCATAc < 1:924180/150‑1 (MQ=255) acaAGCTGCTTGAGAGCCTGCGCCAGCAGTAAGCATTCCGGGGCCGCTGC‑GCGGCCCCGGTAATCTCACGCCCTGAACAGATCCTGCTCCAGCACCAGTGTTTGCTGAACACTGTCCAGCCTCACCCGAGCCCCCAGGGGCAAGCATACa > 1:1778056/1‑150 (MQ=255) gctgctTGAGAGCCTGCGCCAGCAGTAAGCATTCCGGGGCCGCTGC‑GCGGCCCCGGTAATCTCACGCCCTGAACAGATCCTGCTCCAGCACCAGTGTTTGCTGAACACTGTCCATCCTCACCCGAGCCCCCAGGGGCAAGCATACATTCg < 1:372433/150‑1 (MQ=255) ctgctTGAGAGCCTGCGCGAGCAGTAAGCATTCCGGGGGCGCTGC‑GCGGCCCCGGTAATCTCACGCCCTGAACAGATCCTGCTCCAGCACCAGTGTTTGCTGAACACTGTCCAGCCTCACCCGAGCCCCCAGGGGCAAGCATACATTCgg < 2:445842/150‑1 (MQ=255) ctgctTGAGAGCCTGCGCCCGCCGGAACCTTTCCGCTGCCGCTGC‑CCGGCCCCGGTAAACTCACAGGCAACTCAGATCCTGCTCCAGCACCAGTGTTTGCTGAACACTGTCCAGCCTCACCCGAGCCCCCAGGGGCAAGCATACATTCgg < 1:655735/150‑1 (MQ=255) ctgctTGAGAGCCTGCGCCAGCAGTAAGCATTCCGGGGCCGCTGC‑GCGGCCCCGGTAATCTCACGCCCTGAACAGATCCTGCTCCAGCACCAgtgt < 1:188836/96‑1 (MQ=255) ctgctTGAGAGCCTGCGCCAGCAGTAAGCATTCCGGGGCCGCTGC‑GCGGCCCCGGTAATCTCACGCCCTGAACAGATCCTGCTCCAGCACCAgtgt > 2:188836/1‑96 (MQ=255) ctgctTGAGAGCCTGCGCCAGCAGTAAGCATTCCGGGGCCGCTGC‑GCGGCCCCGGTAATCTCACGCCCTGAACAGATCCTGCTCCAGCACCAGTGTTTGCTGAACACTGTCCAGCCTCACCCGAGCCCCCAGGGGCAAGCATACATTCgg < 1:52875/150‑1 (MQ=255) ctTGAGAGCCTGCGCCAGCAGTAAGCATTCCGGGGCCGCTGC‑GCGGCCCCGGTAATCTCACGCCCTGAACAGATCCTGCTCCAGCACCAGTGTTTGCt < 2:670932/98‑1 (MQ=255) ctTGAGAGCCTGCGCCAGCAGTAAGCATTCCGGGGCCGCTGC‑GCGGCCCCGGTAATCTCACGCCCTGAACAGATCCTGCTCCAGCACCAGTGTTTGCt > 1:670932/1‑98 (MQ=255) ttGAGAGCCTGCGCCAGCAGTAAGCATTCCGGGGCCGCTGC‑GCGGCCCCGGTAATCTCACGCCCTGAACAGATCCTGCTCCAGCACCAGTGTTTGCTGAACACTGTCCAGCCTCACCCGAGCCCCCAGGGGCAAGCATACATTCGGGTca > 2:1752486/1‑150 (MQ=255) gagCCTGCGCCAGCAGTAAGCATTCCGGGGCCGCTGC‑GCGGCCCCGGTAATCTCACGCCCTGAACAGATCCTGCTCCAGCACCAGTGTTTGCTGAACACTGTCCAGCCTCACCCGAGCCCCCAGGGGCAAGCATACATTCGGGTCACAGt > 2:1609600/1‑150 (MQ=255) gCCTGCGCCAGCAGTAAGCATTCCGGGGCCGCTGC‑GCGGCCCCGGTAATCTCACGCCCTGAACAGATCCTGCTCCAGCACCAGTGTTTGCTGAACACTGTCCAGCCTCACCCGAGCCCCCAGGGGCAAGCATACATTCGGGTCACAGTGc < 1:1609600/150‑1 (MQ=255) ccTGCGCCAGCAGTAAGCATTCCGGGGCCGCTGC‑GCGGCCCCGGTAATCTCACGCCCTGAACAGATCCTGCTCCAGCACCAGTGTTTGCTGAACACTGTCCAGCCTCACCCGAGcccc > 2:798783/1‑118 (MQ=255) ccTGCGCCAGCAGTAAGCATTCCGGGGCCGCTGC‑GCGGCCCCGGTAATCTCACGCCCTGAACAGATCCTGCTCCAGCACCAGTGTTTGCTGAACACTGTCCAGCCTCACCCGAGcccc < 1:798783/118‑1 (MQ=255) ccTGCGCCAGCAGTAAGCATTCCGGGGCCGCTGC‑GCGGCCCCGGTAATCTCACGCCCTGAACAGATCCTGCTCCAGCACCAGTGTTTGCTGAACACTGTCCAGCCTCACCCGAGCCCCCAGGGGCaa > 1:1704866/1‑127 (MQ=255) ccTGCGCCAGCAGTAAGCATTCCGGGGCCGCTGC‑GCGGCCCCGGTAATCTCACGCCCTGAACAGATCCTGCTCCAGCACCAGTGTTTGCTGAACACTGTCCAGCCTCACCCGAGCCCCCAGGGGCaa < 2:1704866/127‑1 (MQ=255) ccTGCGCCAGCAGTAAGCATTCCGGGGCCGCTGC‑GCGGCCCCGGTAATCTCACGCCCTGAACAGATCCTGCTCCAGCACCAGTGTTTGCTGAACACTGTCCAGCCTCACCCGAGCCCCCAGGGGCAAGCATACATTCGGGTCACAGTGcc > 2:1643509/1‑150 (MQ=255) tGCGCCAGCAGTAAGCATTCCGGGGCCGCTGC‑GCGGCCCCGGTAATCTCACGCCCTGAACAGATCCTGCTCCAGCACCAGTGTTTGCTGAACACTGTCCAGCCTCACCCGAGCCCCCAGGGGCAAGCATACATTCGGGTCACAGTGCCCg > 1:861495/1‑150 (MQ=255) gcgcCAGCAGTAAGCATTCCGGGGCCGCTGC‑GCGGCCCCGGTAATCTCACGCCCTGAACAGATCCTGCTCCAGCACCAGTGTTTGCTGAACACTGTCCAGCCTCACCCGAGCCCCCAGGGGCAAGCATACATTCGGGTCACAGTGCCCGc < 1:1164089/150‑1 (MQ=255) gcCAGCAGTAAGCATTCCGGGGCCGCTGC‑GCGGCCCCGGTAATCTCACGCCCTGAACAGATCCTGCTCCAGCACCAGTGTTTGCTGAACACTGTCCAGCCTCACCCGAGCCCCCAGGGGCAAGCATACATTCGGGTCACAGTTCCCGCtt < 2:1601750/150‑2 (MQ=255) gcCAGCAGTAAGCATTCCGGGGCCGCTGC‑GCGGCCCCGGTAATCTCACGCCCTGAACAGATCCTGCTCCAGCACCAGTGTTTGCTGAACACTGTCCAGCCTCACCCGAGCCCCCAGGGGCAAGCATACATTCGGGTCACAGTGCCCGCTg > 1:1651349/1‑150 (MQ=255) cagcagTAAGCATTCCGGGGCCGCTGC‑GCGGCCCCGGTAATCTCACGCCCTGAACAGATCCTGCTCCAGCACCAGTGTTTGCTGAACACTGTCCAGCCTCACCCGAGCCCCCAGGGGCAAGCATACATTCGGGTCACAGTGCCCGCTgcg > 1:1462196/1‑150 (MQ=255) aaGCATTCCGGGGCCGCTGC‑GCGGCCCCGGTAATCTCACGCCCTGAACAGATCCTGCTCCAGCACCAGTGTTTGCTGAACACTGTCCAGCCTCACCCGAGCCCCCAGGGGCAAGCATACATTCGGGTCACAGTGCCCGCTGCGCCAAccc < 2:1462196/150‑1 (MQ=255) aaGCATTCCGGGGCCGCTGC‑GCGGCCCCGGTAATCTCACGCCCTGAACAGATCCTGCTCCAGCACCAGTGTTTGCTGAACACTGTCCAGCCTCACCCGAGCCCCCAGGGGCAAGCATACATTCGGGTCACAGTGCCCGCTGCGCCAAccc < 2:481291/150‑1 (MQ=255) ttaccGGGGCCGC‑GCAGCGGCCCCGGTAATCTCACGCCCTGAACAGATCCTGCTCCAGCACCAgt < 1:2077276/62‑1 (MQ=25) aTTCCGGGGCCGCTGC‑GCGGCCCCGGTAATCTCACGCCCTGAACAGATCCTGCTCCAGCACCAGTGTTTGCTGAACACTGTCCAGCCTCACCCGAGCCCCCAGGGGCAAGCATACATTCGAGTCACAGTGCCCGCTGCGCCAACCCGCCa > 2:1921968/1‑150 (MQ=255) ttCCGGGGCCGCTGC‑GCGGCCCCGGTAATCTCACGCCCTGAACAGATCCTGCTCCAGCACCAGTGTTTGCTGAACACTGTCCAGCCTCACCCGAGCCCCCAGGGGCAAGCACACATTCGGTGCACATGGCCCGCTGCGAAAACCCGCTAg > 2:397122/1‑150 (MQ=255) cGGGGCCGCTGC‑GCGGCCCCGGTAATCTCACGCCCTGAACAGATCCTGCTCCAGCACCAGTGTTTGCTGAACACTGTCCAGCCTCACCCGAGCCCCCAGGGGCAAGCATACATTCgg > 2:2288965/1‑117 (MQ=255) cGGGGCCGCTGC‑GCGGCCCCGGTAATCTCACGCCCTGAACAGATCCTGCTCCAGCACCAGTGTTTGCTGAACACTGTCCAGCCTCACCCGAGCCCCCAGGGGCAAGCATACATTCgg < 1:2288965/117‑1 (MQ=255) ggCCGCTGC‑GCGGCCCCGGTAATCTCACGCCCTGAACAGATCCTGCTCCAGCACCAGTGTTTGCTGAACACTGTCCAGCCTCACCCGAGCCCCCAGGGGCAAGCATACATTCGGGTCACAGTGCCCGCTGCGCCAACCCGCCAGCACCgg < 1:2323148/150‑1 (MQ=255) gCTGC‑GCGGCCCCGGTAATCTCACGCCCTGAACAGATCCTGCTCCAGCACCAGTGTTTGCTGAACACTGTCCAGCCTCACCCGAGCCCCCAGGGGCAAGCATACATTCGGGTCACAGTGCCCGCTGCGCCAACCCGCCAGCa > 1:2285256/1‑142 (MQ=255) gCTGC‑GCGGCCCCGGTAATCTCACGCCCTGAACAGATCCTGCTCCAGCACCAGTGTTTGCTGAACACTGTCCAGCCTCACCCGAGCCCCCAGGGGCAAGCATACATTCGGGTCACAGTGCCCGCTGCGCCAACCCGCCAGCa < 2:2285256/142‑1 (MQ=255) tGC‑GCGGCCCCGGTAATCTCACGCCCTGAACAGATCCTGCTCCAGCACCAGTGTTTGCTGAACACTGTCCAGCCTCACCCGAGCCCCCAGGGGCAAGCATACATTCGGGTCACAGTGCCCGCTGCGCCAACCCGCCAGCACCGGCACAcc > 2:1316846/1‑150 (MQ=255) | ATGATGCGGGTAATGCCGATGGCATTATCGGGGCCAATACCCGCAAGGCAATCCGCAATGCCCAGCAAGGGCTGGGATGGCCGGCGGATGGCTACCCGACCCACAAGCTGCTTGAGAGCCTGCGCCAGCAGTAAGCATTCCGGGGCCGCTGC‑GCGGCCCCGGTAATCTCACGCCCTGAACAGATCCTGCTCCAGCACCAGTGTTTGCTGAACACTGTCCAGCCTCACCCGAGCCCCCAGGGGCAAGCATACATTCGGGTCACAGTGCCCGCTGCGCCAACCCGCCAGCACCGGCACACC > NC_002947/5462292‑5462590 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |