| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 47,139 | Δ1 bp | 5.7% | coding (2236/3162 nt) | czcA‑I ← | cation efflux system protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 47,139 | 0 | C | . | 5.7% | 509.6 / 24.2 | 159 | coding (2236/3162 nt) | czcA‑I | cation efflux system protein |
| Reads supporting (aligned to +/- strand): ref base C (73/77); new base . (5/4); total (78/81) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.43e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.17e-01 | |||||||||||
Only 100 of 159 total aligned reads displayed.
GTACCGGGATCAGCAAGCTGGACATACCCGCTACGTCGGTGCGAACGGTCTCTGGTAGGCGTACTACCATGTCGAACCGACGGTCGCCCTCATACAGCGTGCCGGCCTGACGGCCACCCACGGCGATAGCGATCGAGTTCTGAACATCCGC‑GATGTTCAGGCCGTAGCGTGCTGCTTTTTCGCGGTCAATGTTGATGGTCAGCACCGGCAGGCCGGATGTCTGCTCAACTTTCACTTCCGATGAGCCCGGGACCGCTTTGAGCGCTGCCGCGATCTTGTTGGCGGTGTTGTTGAG > NC_002947/46992‑47286 | tACCGGGATCAGCAAGCTGGACATACCCGCTACGTCGGTGCGAACGGTCTCTGGTAGGCGTACTACCATGTCGAACCGACGGTCGCCCTCATACAGCGTGCCGGCCTGACGGCCACCCACGGCGATAGCGATCGAGTTCTGAACATCcgc < 2:1585421/150‑1 (MQ=255) tCAGCAAGCTGGACATACCCGCTACGTCGGTGCGAACGGTCTCTGGTAGGCGTACTACCATGTCGAACCGACGGTCGCCCTCATACAGCGTGCCGGCCTGACGGCCACCCACGGCGATAGCGATCGAGTTCTGAACAT‑CGCGGATGTTCa < 2:670078/150‑1 (MQ=255) gCAAGCTGGAAATACCCGCTACGTAGGTGCGAACGGTCTTTGGTAGGCGTACTACCAGGTCTAACCGACGGTCGCCTTCATACAGCGTGCCGGCCTGACGGCCACCCACGGCGATAGCGATCGAGTTCTGAACATCCGC‑GATGTTCAGGc > 2:24896/1‑150 (MQ=255) gCTGGACATACCCGCTACGTCGGTGCGAACGGTCTCTGGTAGGCGTACTACCATGTCGAACCGACGGTCGCCCTCATACAGCGTGCCGGCCTGACGGCCACCCACGGCGATAGCGAGCGAGTTCTGAACATCCGC‑GATGTTCAGGCCGTa > 2:1597649/1‑150 (MQ=255) gCTGGACATACCCGCTACGTCGGTGCGAACGGTCTCTGGTAGGCGTACTACCATGTCGAACCGACGGTCGCCCTCATACAGCGTGCCGACCTGACGGCCACCCACGGCGATAGCGATCGAGTTCTGAACATCCGC‑GATGTTCAGGCCGTa > 1:180996/1‑150 (MQ=255) tGGACATACCCGCTACGTCGGTGCGAACGGTCTCTGGTAGGCGTACTACGATGTCGAACCGACGGTCGCCCGCATACAGCGTGCCGGCCTGACGGCCACCCACGGCGATAGCGATCGAGTCCTTAACGTCCGC‑GCGGTGCAGGCCGTAGc > 2:558292/1‑150 (MQ=255) aCCCGCTACGTCGGTGCGAACGGTCTCTGGTAGGCGTACTACCATGTCGAACCGACGGTCGCCCTCATACAGCGTGCCGGCCTGACGGCCACCCACGGCGATAGCGATCGAGTTCTGAACATCCGC‑GATGTTCAGGCCGTAGCGtgctgc > 2:1816839/1‑150 (MQ=255) ccGCTACGTCGGTGCGAACGGTCTCTGGTAGGCGTACTACCATGTCGAACCGACGGTCGCCCTCATACAGCGTGCCGGCCTGACGGCCACCCACGGCGATAGCGATCGAGTTCTGAACATCCGC‑GATGTTCAGGCCGTAGCGTGCTGCtt > 2:1575739/1‑150 (MQ=255) ccGCTACGTCGGTGCGAACGGTCTCTGGTAGGCGTACTACCATGTCGAACCGACGGTCGCCCTCATACAGCGTGCCGGCCTGACGGCCACCCACGGCGATAGCGATCGAGTTCTGAACATCCGC‑GATGTTCAGGCCGTAGCGTGCTGCtt > 1:895771/1‑150 (MQ=255) ccGCTACGTCGGTGCGAACGGTCTCTGGTAGGCGTACTACCATGTCGAACCGACGGTCGCCCTCATACAGCGTGCCGGCCTGACGGCCACCCACGGCGATAGCGATCGAGTTCTGAACATCCGC‑GATGTTCAGGCCGTAGCGTGCTGCtt > 2:154261/1‑150 (MQ=255) ccGCTACGTCGGTGCGAACGGTCTCTGGTAGGCGTACTACCATGTCGAACCGACGGTCGCCCTCATACAGCGTGCCGGCCTGACGGCCACCCACGGCGATAGCGATCGAGTTCTGAACATCCGC‑GATGTTCAGGCCGTAGCGTGCTGCtt > 2:1787895/1‑150 (MQ=255) aCGTCGGTGCGAACGGTCTCTGGTAGGCGTACTACCATGTCGAACCGACGGTCGCCCTCATACAGCGTGCCGGCCTGACGGCCACCCACGGCGATAGCGATCGAGTTCTGAACATCCGC‑GATGTTCAg > 1:78819/1‑128 (MQ=255) gCGAACGGTCTCTGGTAGGCGTACTACCATGTCGAACCGACGGTCGCCCTCATACAGCGTGCCGGCCTGACGGCCACCCACGGCGATAGCGATCGAGTTCTGAACATCCGC‑GATGTTCAGGCCGTAGCGTGCTGCTTTTTCGCGGTCAAt < 2:2164069/150‑1 (MQ=255) gCGAACGGTCTCTGGTAGGCGTACTACCATGTCGAACCGACGGTCGCCCTCATACAGCGTGCCGGCCTGACGGCCACCCACGGCGATAGCGATCGAGTTCTGAACATCCGC‑GATGTTCAGGCCGTAGCGTGCTGCTTTTTCGCGGTCAAt < 2:1421651/150‑1 (MQ=255) gTCTCTGGTAGGCGTACTACCATGTCGAACCGACGGTCGCCCTCATACAGCGTGCCGGCCTGACGGCCACCCACGGCGATAGCGATCGAGTTCTGAACATCCGC‑GATGTTCAGGCCGTAGCGTGCTGCTTTTTCGCGGTCAATGTTGATg < 2:486165/150‑1 (MQ=255) tctGGTAGGCGTACTACCATGTCGAACCGACGGTCGCCCTCATACAGCGTGTCGGCCTGACTGCCACCCACGGCGATAGCGATCGAGTTCTGAACATCcgc < 2:854823/101‑1 (MQ=255) ctGGTAGGCGTACTACCATGTCGAACCGACGGTCGCCCTCATACAGCGTGCCGGCCTGACGGCCACCCACGGCGATAGCGATCGAGTTCTGAACATCCGC‑GATGTTCAGGCCGTAGCGTGCTGCTTTTTCGCGGTCAATGTTGATGGtaa < 1:1575739/150‑3 (MQ=255) tGGTAGGCGTACTACCATGTCGAACCGACGGTCGCCCTCATACAGCGTGCCGGCCTGACGGCCACCCACGGCGATAGCGATCGAGTTCTGAACATCCGC‑GATGTTCAGGCCGTAGCGTGCTGCTTTTTCGCGGTCAATGTTGATGGTCAg > 2:229499/1‑150 (MQ=255) gTACTACCATGTCGAACCGACGGTCGCCCTCATACAGCGTGCCGGCCTGACGGCCACCCACGGCGATAGCGATCGAGTTCTGAACATCCGC‑GATGTTCAgg < 2:1283397/101‑1 (MQ=255) tactacCATGTCGAACCGACGGTCGCCCTCATACAGCGTGCCGGCCTGACGGCCACCCACGGCGATAGCGATCGAGTTCTGAACATCCGC‑GATGTTCAGGCCGTAGCGTGCTGCTTTTTCGCGGTCAATGTTGATGGTCAGCACCGGCAg > 1:2307528/1‑150 (MQ=255) actacCATGTCGAACCGACGGTCGCCCTCATACAGCGTGCCGGCCTGACGGCCACCCACGGCGATAGCGATCGAGTTCTGAACATCCGC‑GATGTTCAGGCCGTAGCGtgc > 2:1900140/1‑110 (MQ=255) actacCATGTCGAACCGACGGTCGCCCTCATACAGCGTGCCGGCCTGACGGCCACCCACGGCGATAGCGATCGAGTTCTGAACATCCGC‑GATGTTCAGGCCGTAGCGTGCTGCTTTTTCGCGGTCAATGTTGATGGTCAGCACCGGCAgg > 1:2352488/1‑150 (MQ=255) ctacCATGTCGAACCGACGGTCGCCCTCATACAGCGTGCCGGCCTGACGGCCACCCACGGCGATAGCGATCGAGTTCTGAACATCCGC‑GATGTTCAGGCCGTAGCGTGCTGCTTTTTCGCGGTCAATGt < 1:1733726/129‑1 (MQ=255) tacCATGTCGAACCGACGGTCGCCCTCATACAGCGTGCCGGCCTGACGGCCACCCACGGCGATAGCGATCGAGTTCTGAACATCCGC‑GATGTTCAGGCCGTAGCGTGCTGCTTTTTc > 1:729902/1‑117 (MQ=255) tacCATGTCGAACCGACGGTCGCCCTCATACAGCGTGCCGGCCTGACGGCCACCCACGGCGATAGCGATCGAGTTCTGAACATCCGC‑GATGTTCAGGCCGTAGCGTGCTGCTTTTTCGCGGTCAATGTTGATGGTCAGCACCGGCAGGcc > 1:1599611/1‑150 (MQ=255) ccATGTCGAACCGACGGTCGCCCTCATACAGCGTGCCGGCCTGACGGCCACCCACGGCGATAGCGATCGAGTTCTGAACATCCGC‑GATGTTCAGGCCGTAGCGTGCTGCTTTTTCGCGGTCAATGTTGa > 2:1066188/1‑129 (MQ=255) ccATGTCGAACCGACGGTCGCCCTCATACAGCGTGCCGGCCTGACGGCCACCCACGGCGATAGCGATCGAGTTCTGAACATCCGC‑GATGTTCAGGCCGTAGCGTGCTGCTTTTTCGCGGTCAATGTTGATGGTCAGCACCGGCAGGCCgg > 1:832103/1‑150 (MQ=255) aTGTCGAACCGACGGTCGCCCTCATACAGCGTGCCGGCCTGACGGCCACCCACGGCGATAGCGATCGAGTTCTGAACATCCGC‑GATGTTCAGGCCGTAGCGTGCTGCTTTTTCGCGGTCAATGTTGATGGTCAGCACCg > 2:915072/1‑139 (MQ=255) gTCGAACCGACGGTCGCCCTCATACAGCGTGCCGGCCTGACGGCCACCCACGGCGATAGCGATCGAGTTCTGAACATCCGC‑GATGTTCAGGCCGTAGCGTGCTGCTTTTTCGCGGTCAATGTTGATGGTCAGCACCGGCAGGCCGGATGt > 1:2141099/1‑150 (MQ=255) tCGAACCGACGGTCGCCCTCATACAGCGTGCCGGCCTGACGGCCACCCACGGCGATAGCGATCGAGTTCTGAACATCCGC‑GATGTTCAGGCCGTAGCGTGCTGCTTTTTCGCGGTCAATGTTGATGGTCAGCACCg < 2:160053/136‑1 (MQ=255) tCGAACCGACGGTCGCCCTCATACAGCGTGCCGGCCTGACGGCCACCCACGGCGATAGCGATCGAGTTCTGAACATCCGC‑GATGTTCAGGCCGTAGCGTGCTGCTTTTTCGCGGTCAATGTTGATGGTCAGCACCGGCAGGCCGGATGTc > 2:2207795/1‑150 (MQ=255) tCGAACCGACGGTCGCCCTCATACAGCCTGCCCGCCTGACGGCCACCCACGGCGATAGCGATCGAGTTCTCCACACCCGC‑GATGTTCAGGCCGTAGCGTGCTGCTTTTTCGCGGTCAATATTGATGGTCAGCCCCCGCAGGCCGGATGTc > 2:1206191/1‑150 (MQ=255) gAACCGACGGTCGCCCTCATACAGCGTGCCGGCCTGACGGCCACCCACGGCGATAGCGATCGAGTTCTGAACATCCGC‑GATGTTCAGGCCGTAGCGTGCTGCTTTTTCGCGGTCaa < 2:602974/116‑1 (MQ=255) gAACCGACGGTCGCCCTCATACAGCGTGCCGGCCTGACGGCCACCCACGGCGATAGCGATCGAGTTCTGAACATCCGC‑GATGTTCAGGCCGTAGCGTGCTGCTTTTTCGCGGTCaa > 1:602974/1‑116 (MQ=255) aaCCGACGGTCGCCCTCATACAGCGTGCCGGCCTGACGGCCACCCACGGCGATAGCGATCGAGTTCTGAACATCCGC‑GATGTTCAGGCCGTAGCGTGCTGCTTTTTCGCGGTCAATGTTGATGGTCAGCACCGGCAGGCCGGATGTCTGc > 2:75473/1‑150 (MQ=255) aaCCGACGGTCGCCCTCATACAGCGTGCCGGCCTGACGGCCACCCACGGCGATAGCGATCGAGTTCTGAACATCCGC‑GATGTTCAGGCCGTAGCGTGCTGCTTTTTCGCGGTCAATGTTGATGGTCAGCACCGGCAGGCCGGATGTCTGc > 2:28399/1‑150 (MQ=255) aaCCGACGGTCGCCCTCATACAGCGTGCCGGCCTGACGGCCACCCACGGCGATAGCGATCGAGTTCTGAACATCCGC‑GATGTTCAGGCCGTAGCGTGCTGCTTTTTCGCGGTCAATGTTGATGGTCAGCACCGGCAGGCCGGATGTCTGc > 1:1029360/1‑150 (MQ=255) ggTCGCCCTCATACAGCGTGCCGGCCTGACGGCCACCCACGGCGATAGCGATCGAGTTCTGAACATCCGC‑GATGTTCAGGCCGTAGCGTGCTGCTTTTTCGCGGTCAATGTTGATGGTCAGCACCGGCAGGCCGGa < 2:1885024/136‑1 (MQ=255) ggTCGCCCTCATACAGCGTGCCGGCCTGACGGCCACCCACGGCGATAGCGATCGAGTTCTGAACATCCGC‑GATGTTCAGGCCGTAGCGTGCTGCTTTTTCGCGGTCAATGTTGATGGTCAGCACCGGCAGGCCGGa > 1:1885024/1‑136 (MQ=255) ggTCGCCCTCATACAGCGTGCCGGCCTGACGGCCACCCACGGCGATAGCGATCGAGTTCTGAACATCCGC‑GATGTTCAGGCCGTAGCGTGCTGCTTTTTCGCGGTCAATGGTGATGGTCAGCACCGGCAGGCCGGATGTCTGCTCAACtt > 1:1966617/1‑150 (MQ=255) tCGCCCTCATACAGCGTGCCGGCCTGACGGCCACCCACGGCGATAGCTATCGAGTTCTGAACATCCGC‑GATGTTCAGGCCGTAGCGTGCTGCTTTTTCGCGGTCAATGTTGGTGGTCAGCACCGGCAGGCCGGATGTCTGCTCAACTTTc > 2:1129454/1‑150 (MQ=255) ccTCATACAGCGTGCCGGCCTGACGGCCACCCACGGCGATAGCGATCGAGTTCTGAACATCCGC‑GATGTTCAGGCCGTAGCGTGCTGCTTTTTCGCGGTCAATGTTGATg > 2:1375878/1‑110 (MQ=255) tCATACAGCGTGCCGGCCTGACGGCCACCCACGGCGATAGCGATCGAGTTCTGAACATCCGC‑GATGTTCAGGCCGTAGCGTGCTGCTTTTTCGCGGTCAATGTTGATGGTCAGCACCGGCAGGCCGGATGTCTGCTCAACTTTCACTTcc > 1:2321756/1‑150 (MQ=255) aTACAGCGTGCCGGCCTGACGGCCACCCACGGCGATAGCGATCGAGTTCTGAACATCCGC‑GATGTTCAGGCCGTAGCGTGCTGCTTTTTCGCGGTCAATGTTGATGGTCAGCACCGGCAGGCCGGATGTCTGCTCAACTTTCACTTCCGa > 2:2344261/1‑150 (MQ=255) aTACAGCGTGCCGGCCTGACGGCCACCCACGGCGATAGCGATCGAGTTCTGAACATCCGC‑GATGTTCAGGCCGTAGCGTGCTGCTTTTTCGCGGTCAATGTTGATGGTCAGCACCGGCAGGCCGGATGTCTGCTCAACTTTCACTTCCGa < 1:154261/150‑1 (MQ=255) aTACAGCGTGCCGGCCTGACGGCCACCCACGGCGATAGCGATCGAGTTCTGAACATCCGC‑GATGTTCAGGCCGTAGCGTGCTGCTTTTTCGCGGTCAATGTTGATGGTCAGCACCGGCAGGCCGGATGTCTGCTCAACTTTCACTTCCGa < 1:2207795/150‑1 (MQ=255) tACAGCGTGCCGGCCTGACGGCCACCCACGGCGATAGCGATCGAGTTCTGAACATCCGC‑GATGTTCAGGCCGTAGCGTGCTGCTTTTTCGCGGTCAATGTTGATGGTCAGCACCGGCAGGCCGGATGTCTGCTCAACTTTCACTTCCGAt > 2:1018918/1‑150 (MQ=255) tACAGCGTGCCGGCCTGACGGCCACCCACGGCGATAGCGATCGAGTTCTGAACATCCGC‑GATGTTCAGGCCGTAGCGTGCTGCTTTTTCGCGGTCAATGTTGATGGTCAGCACCGGCAGGCCGGATGTCTGCTCAACTTTCACTTCCGAt < 1:281310/150‑1 (MQ=255) gTGCCGGCCTGACGGCCACCCACGGCGATAGCGATTGAGTTCTGAACATCCGC‑GATGGCCAGGCCGTAGCGTGCTGCTTTTTCGCGGTCAATGTTGATGGTCAGCACCGGCAGGCCGGATGTCTGCTCAACTTTCACTTCCGATGAGccc < 1:24896/150‑1 (MQ=255) gTGCCGGCCTGACGGCCACCCACGGCGATAGCGATCGAGTTCTGAACATCCGC‑GATGTTCAGGCCGTAGCGTGCTGCTTTTTCGCGGTCAATGTTGATGGTCAGCACCGGCAGGCCGGATGTCTGCTCAACTTTCACTTCCGATGAGccc > 1:705348/1‑150 (MQ=255) gCCGGCCTGACGGCCACCCACGGCGATAGCGATCGAGTTCTGAACATCCGC‑GATGTTCAGGCCGTAGCGTGCTGCTTTTTCGCGGTCAATGTTGATGGTCAGCACCGGCAGGCCGGATGTCTGCTCAACTTTCACTTCCGATGAGCCCgg < 1:1047866/150‑1 (MQ=255) cGGCCTGACGGCCACCCACGGCGATAGCGATCGAGTTCTGAACATCCGC‑GATGTTCAGGCCGTAGCGTGCTGCTTTTTCGCGGTCAATGTTGATGGTCAGCACCGGCAGGCCGGATGTCTGCTCAACTTTCACTTCCGATGAGCCCGGGa < 1:1483058/150‑1 (MQ=255) cGGCCTGACGGCCACCCACGGCGATAGCGATCGAGTTCTGAACATCCGC‑GATGTTCAGGCCGTAGCGTGCTGCTTTTTCGCGGTCAATGTTGATGGTCAGCACCGGCAGGCCGGATGTCTGCTCAACTTTCACTTCCGATGAGCCCGGGa < 1:1396831/150‑1 (MQ=255) ggCCTGACGGCCACCCACGGCGATAGCGATCGAGTTCTGAACATCCGC‑GATGTTCAGGCCGTAGCGTGCTGCTTTTTCGCGGTCAATGTTGATGGTCAGCACCGGGAGGCCGGATGTCTGCTCAACTTTCACTCCCGATGAGCCCGGGAc < 1:1287956/150‑1 (MQ=255) aCGGCCACCCACGGCGATAGCGATCGAGTTCTGAACATCCGC‑GATGTTCAGGCCGTAGCGTGCTGCTTTTTCGCGGTCAATGTTGATGGTCAGCACCGGCAGGCCGGATGTCTGCTCAACTTTCACTTCCGATGAGCCCGGGACCGCttt < 1:1126251/150‑1 (MQ=255) ggCCACCCACGGCGATAGCGATCGAGTTCTGAACATCCGC‑GATGTTCAGGCCGTAGCGTGCTGCTTTTTCGCGGTCAATGTTGATGGTCAGCACCGGCAGGCCGGATGTCTGCTCAACTTTCACTTCCGATGATCCCGGGACCGCTTTGa < 2:2022138/150‑1 (MQ=255) ggCCACCCACGGCGATAGCGATCGAGTTCTGAACATCCGC‑GATGTTCAGGCCGTAGCGTGCTGCTTTTTCGCGGTCAATGTTGATGGTCAGCACCGGCAGGCCGGATGTCTGCTCAACTTTCACTTCCGATGAGCCCGGGACCGCTTTGa < 2:1517127/150‑1 (MQ=255) gCCACCCACGGCGATAGCGATCGAGTTCTGAACATCCGC‑GATGTTCAGGCCGTAGCGTGCTGCTTTTTCGCGGTCAATGTTGATGGTCAGCACCGGCAGGCCGGATGTCTGCTCAACTTTCACTTCCGATGAGCCCGGGACCg < 1:1542883/143‑1 (MQ=255) gCCACCCACGGCGATAGCGATCGAGTTCTGAACATCCGC‑GATGTTCAGGCCGTAGCGTGCTGCTTTTTCGCGGTCAATGTTGATGGTCAGCACCGGCAGGCCGGATGTCTGCTCAACTTTCACTTCCGATGAGCCCGGGACCg > 2:1542883/1‑143 (MQ=255) ccacccacGGCGATAGCGATCGAGTTCTGAACATCCGC‑GATGTTCAGGCCGTAGCGTGCTGCTTTTTCGCGGTCAATGTTGAt < 2:207428/83‑1 (MQ=255) ccacccacGGCGATAGCGATCGAGTTCTGAACATCCGC‑GATGTTCAGGCCGTAGCGTGCTGCTTTTTCGCGGTCAATGTTGAt > 1:207428/1‑83 (MQ=255) ccacGGCGATAGCGATCGAGTTCTGAACATCCGC‑GATGTTCa < 2:1740597/42‑1 (MQ=255) ccacGGCGATAGCGATCGAGTTCTGAACATCCGC‑GATGTTCa > 1:1740597/1‑42 (MQ=255) ccacGGCGATAGCGATCGAGTTCTGAACATCCGC‑GATGTTCAGGCCGTAGCGTGCTGCTTTTTCGCGGTCAATGTTGATGGTCAg < 2:1457071/85‑1 (MQ=255) ccacGGCGATAGCGATCGAGTTCTGAACATCCGC‑GATGTTCAGGCCGTAGCGTGCTGCTTTTTCGCGGTCAATGTTGATGGTCAg > 1:1457071/1‑85 (MQ=255) ccacGGCGATAGCGATCGAGTTCTGAACATCCGC‑GATGTTCAGGCCGTAGCGTGCTGCTTTTTCGCGGTCAATGTTGATGGTCAGCACCGGCAGGCCGGATGTCTGCTCAACTTTCACTTc > 2:885114/1‑121 (MQ=255) ccacGGCGATAGCGATCGAGTTCTGAACATCCGC‑GATGTTCAGGCCGTAGCGTGCTGCTTTTTCGCGGTCAATGTTGATGGTCAGCACCGGCAGGCCGGATGTCTGCTCAACTTTCACTTc < 1:885114/121‑1 (MQ=255) ccacGGCGATAGCGATCGAGTTCTGAACATCCGC‑GATGTTCAGGCCGTAGCGTGCTGCTTTTTCGCGGTCAATGTTGATGGTCAGCACCGGCAGGCCGGATGTCTGCTCAACTTTCACTTCCGATGAGCCCGGGACCGCTTTGAGCGCTg > 1:459874/1‑150 (MQ=255) acGGCGATAGCGATCGAGTTCTGAACATCCGC‑GATGTTCAGGCCGTAGCGTGCTGCTTTTTCGCGGTCAATGTTGATGGTCAGCACCGGCAGGCCGGATGTCTGCTCAACTTTCACTTCCGATGAGCCCGGGACCGCTTTGAGCGCTGcc > 2:800041/1‑150 (MQ=255) aTAGCGATCGAGTTCTGAACATCCGC‑GATGTTCAGGCCGTAGCGTGCTGCTTTTTCGCGGTCAATGTTGATGGTCAGCACCGGCAGGCCGGATGTCTGCTCAACTTTCACTTCCGATGAGCCCGGGAc < 2:2291087/128‑1 (MQ=255) cGATCGAGTTATGAACATCCGC‑GATGTTCAGGCCGTAGCGTGCTGCTTTTTCGCGGTCAATGTTGATGGTCAGCACCGGCAGGCCGGATGTCTGCTCAACTTTCACTTCCGATGAGCCCGGGACCGCTTTGAGCGCTGCCGCGATCttgt < 1:1206191/150‑1 (MQ=255) gATCGAGTTCTGAACATCCGC‑GATGTTCAGGCCGTAGCGTGCTGCTTTTTCGCGGTCAATGTTGATGGTCAGCACCGGCAGGCCGGATGTCTGCTCAACTTTCACTTCCGATGAGCCCGGGACCGCTTTGAGCGCTGCCGAGATcggaag > 1:1130943/1‑145 (MQ=255) aTCGAGTTCTGAACATCCGC‑GATGTTCAGGCCGTAGCGTGCTGCTTTTTCGCGGTCAATGTTGATGGTCAGCACCGGCAGGCCGGATGTCTGCTCAACTTTCACTTCCGATGAGCCCGGGACCGCTTTGAgc < 2:138321/132‑1 (MQ=255) aTCGAGTTCTGAACATCCGC‑GATGTTCAGGCCGTAGCGTGCTGCTTTTTCGCGGTCAATGTTGATGGTCAGCACCGGCAGGCCGGATGTCTGCTCAACTTTCACTTCCGATGAGCCCGGGACCGCTTTGAgc > 1:138321/1‑132 (MQ=255) aTCGAGTTCTGAACATCCGC‑GATGTTCAGGCCGTAGCGTGCTGCTTTTTCGCGGTCAATGTTGATGGTCAGCACCGGCAGGCCGGATGTCTGCTCAACTTTCACTTCCGATGAGCCCGGGACCGCTTTGAGCGCTGCCGCGATCttgttg < 1:525312/150‑1 (MQ=255) tCGAGTTCTGAACATCCGC‑GATGTTCAGGCCGTAGCGTGCTGCTTTTTCGCGGTCAATGTTGATGGTCAGCACCGGCAGGCCGGATGTCTGCTCAACTTTCACTTCCGATGa > 1:1863710/1‑112 (MQ=255) tCGAGTTCTGAACATCCGC‑GATGTTCAGGCCGTAGCGTGCTGCTTTTTCGCGGTCAATGTTGATGGTCAGCACCGGCAGGCCGGATGTCTGCTCAACTTTCACTTCCGATGAGCCCGGGACCGCTTTGa > 2:2233350/1‑129 (MQ=255) tCGAGTTCTGAACATCCGC‑GATGTTCAGGCCGTAGCGTGCTGCTTTTTCGCGGTCAATGTTGATGGTCAGCACCGGCAGGCCGGATGTCTGCTCAACTTTCACTTCCGATGAGCCCGGGACCGCTTTGa < 1:2233350/129‑1 (MQ=255) tCGAGTTCTGAACATCCGC‑GATGTTCAGGCCGTAGCGTGCTGCTTTTTCGCGGTCAATGTTGATGGTCAGCACCGGCAGGCCGGATGTCTGCTCAACTTTCACTTCCGATGAGCCCGGGACCGCTTTGAGCGCTGCCGCGATCtt > 1:8147/1‑145 (MQ=255) tCGAGTTCTGAACATCCGC‑GATGTTCAGGCCGTAGCGTGCTGCTTTTTCGCGGTCAATGTTGATGGTCAGCACCGGCAGGCCGGATGTCTGCTCAACTTTCACTTCCGATGAGCCCGGGACCGCTTTGAGCGCTGCCGCGATCtt < 2:8147/145‑1 (MQ=255) tCGAGTTCTGAACATCCGC‑GATGTTCAGGCCGTAGCGTGCTGCTTTTTCGCGGTCAATGTTGATGGTCAGCACCGGCAGGCCGGATGTCTGCTCAACTTTCACTTCCGATGAGCCCGGGACCGCTTTGAGCGCTGCCGCGATCTTGTTgg > 2:1047699/1‑150 (MQ=255) cGAGTTCTGAACATCCGC‑GATGTTCATGCCGTAGCGTGCTGCTTTTTCGCGGTCAATGTTGATGGTCAGCACCGGGAGGCCGGATGTCTGCTCAACTTTCACTTCCGATGAGCCCGGCACCGCTTTGAGCGCTGCCGCGATCTTGTTGGc < 2:37956/150‑1 (MQ=255) cGAGTTCTGAACATCCGC‑GATGTTCAGGCCGTAGCGTGCTGCTTTTTCGCGGTCAATGTTGATGGTCAGCACCGGCAGGCCGGATGTCTGCTCAACTTTCACTTCCGATGAGCCCGGGACCGCTTTGAGCGCTGCCGCGATCTTGTTGGc < 2:268443/150‑1 (MQ=255) gAGTTCTGAACATCCGC‑GATGTTCAGGCCGTAGCGTGCTGCTTTTTCGCGGTCAATGTTGATGGTCAGCACCGGCAGGCCGGATGTCTGCTCAACTTTCACTTCCGATGAGCCCGGGACCGCTTTGAg > 1:1631623/1‑128 (MQ=255) gAGTTCTGAACATCCGC‑GATGTTCAGGCCGTAGCGTGCTGCTTTTTCGCGGTCAATGTTGATGGTCAGCACCGGCAGGCCGGATGTCTGCTCAACTTTCACTTCCGATGAGCCCGGGACCGCTTTGAg < 2:1631623/128‑1 (MQ=255) gAGTTCTGAACATCCGC‑GATGTTCAGGCCGTAGCGTGCTGCTTTTTCGCGGTCAATGTTGATGGTCAGCACCGGCAGGCCGGATGTCTGCTCAACTTTCACTTCCGATGAGCCCGGGACCGCTTTGAGCGCTGCCGCGCTCTTGTTAGCg < 2:644924/150‑1 (MQ=255) gAGTTCTGAACATCCGC‑GATGTTCAGGCCGTAGCGTGCTGCTTTTTCGCGGTCAATGTTGATGGTCAGCACCGGCAGGCCGGATGTCTGCTCAACTTTCACTTCCGATGAGCCCGGGACCGCTTTGAGCGCTGCCGCGATCTTGTTGGCg < 1:1597649/150‑1 (MQ=255) ggccTGAACATCGCG‑GATGTTCAGGCCGTAGCGTGCTGCTTTTTCGCGGTCAATGTTGATGGTCAGCACCGGCAGGCCGGATGTCTGCTCAACTTTCACTTCCGATGAGCCCGGGACCGCTTTGAGCGCTGCCGCGATCTTGTTGGCGgt < 1:12835/147‑1 (MQ=255) gccTGAACAT‑CGCGGATGTTCAGACCGTAGCGTGCTGCTTTTTCGCGGTCAATGTTGATGGTCAGCACCGGCAGGCCGGATGTCt > 2:2086665/3‑85 (MQ=38) gccTGAACAT‑CGCGGATGTTCAGACCGTAGCGTGCTGCTTTTTCGCGGTCAATGTTGATGGTCAGCACCGGCAGGCCGGATGTCt < 1:2086665/83‑1 (MQ=38) ccTGAACAT‑CGCGGATGTTCAGGCCGTAGCGTGCTGCTTTTTCGCGGTCAATGTTGATGGTCAGCACCGGCAGGCCGGa < 2:2121328/78‑1 (MQ=38) ccTGAACAT‑CGCGGATGTTCAGGCCGTAGCGTGCTGCTTTTTCGCGGTCAATGTTGATGGTCAGCACCGGCAGGCCGGa > 1:2121328/2‑79 (MQ=38) cTGAACATCGCG‑GATGTTCAGGCCGTAGCGTGCTGCTTTTTCGCGGTCAATGTTGATGGTCAGCACCGGCAGGCCGGATGTCTGCTCAACTTTCACTTCCGATGAGCCCGGGa < 1:1056657/113‑1 (MQ=255) cTGAACAT‑CGCGGATGTTCAGGCCGTAGCGTGCTGCTTTTTCGCGGTCAATGTTGATGGTCAGCACCGGCAGGCCGGATGTCTGCTCAACTTTCACTTCCGATGAGCCCGGGa > 2:1056657/1‑113 (MQ=255) aaCAGCCGC‑GATGTTCAGGCCGTAGCGTGCTGCTTTTTCGCGGTCAATGTTGATGGTCAGCACCGGCAGGCCGGATGTCTGCTCAACTTTCACTTCCGATGAGCCCGGGACCGCTTTGAGCGATGCCGCGATCTTGTTGGCGGTgttgtt < 1:266630/150‑1 (MQ=255) aCATCCGC‑GATGTTCAGGCCGTAGCGTGCTGCTTTTTCGCGGTCAATGTTGATGGTCAGCACCGGCAGGCCGGAt < 2:1040885/75‑1 (MQ=255) aCATCCGC‑GATGTTCAGGCCGTAGCGTGCTGCTTTTTCGCGGTCAATGTTGATGGTCAGCACCGGCAGGCCGGAt > 1:1040885/1‑75 (MQ=255) cATCCGC‑GATGTTCAGGCCGTAGCGTGCTGCTTTTTCGCGGTCAATGTTGATGGTCAGCACCGGCAGGCCGGATGTCTGCTCAACTTTCGCTTCCGATGAGCCCGGGACCGCTTTGAGCGCTGCCGCGATCTTGTTGGCGGTGTTGTTGa < 1:581052/150‑1 (MQ=255) cATCCGC‑GATGTTCAGGCCGTAGCGTGCTGCTTTTTCGCGGTCAATGTTGATGGTCAGCACCGGCAGGCCGGATGTCTGCTCAACTTTCACTTCCGATGAGCCCGGGACCGCTTTGAGCGCTGCCGCGATCTTGTTGGCGGTGTTGTTGa < 1:1490548/150‑1 (MQ=255) aTCCGC‑GATGTTCAGGCCGTAGCGTGCTGCTTTTTCGCGGTCAATGTTGATGGTCAGCACCGGCAGGCCGGATGTCTGCTCAACTTTCACTTCCGATGAGCCCGGGACCGCTTTGAGCGCTGCCGCGATCTTGTTGGCGGTGTTGTTGAg > 1:1630401/1‑150 (MQ=255) | GTACCGGGATCAGCAAGCTGGACATACCCGCTACGTCGGTGCGAACGGTCTCTGGTAGGCGTACTACCATGTCGAACCGACGGTCGCCCTCATACAGCGTGCCGGCCTGACGGCCACCCACGGCGATAGCGATCGAGTTCTGAACATCCGC‑GATGTTCAGGCCGTAGCGTGCTGCTTTTTCGCGGTCAATGTTGATGGTCAGCACCGGCAGGCCGGATGTCTGCTCAACTTTCACTTCCGATGAGCCCGGGACCGCTTTGAGCGCTGCCGCGATCTTGTTGGCGGTGTTGTTGAG > NC_002947/46992‑47286 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |