| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 5,585,557 | Δ1 bp | 7.1% | coding (226/2259 nt) | parC ← | DNA topoisomerase IV subunit A |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,585,557 | 0 | C | . | 7.1% | 331.2 / 20.0 | 112 | coding (226/2259 nt) | parC | DNA topoisomerase IV subunit A |
| Reads supporting (aligned to +/- strand): ref base C (53/49); new base . (3/5); total (57/55) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.85e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.78e-01 | |||||||||||
Only 100 of 113 total aligned reads displayed.
GCGAACGACTTCGGATCATCCGGCGCACCCCAGTTGCCCTGGCCATCGACCAGGGTATAGCGGTAGCTGAACGGCTGCGCCATCAGCACCATGGCCTCGTAGCAGGCCGAATCGCCATGGGGATGGAACTTGCCGAGCACGTCACCGACGGT‑ACGTGCCGACTTCTTGTGCTTGGCATCGGCATCGAGCCCCAACTCGCTCATGGCGTAGACGATGCGTCGCTGCACCGGCTTCAGGCCGTCGCCGATATGCGGCAAGGCACGATCCATGATCACGTACATGGAGTAGTTGA > NC_002947/5585415‑5585706 | gcgAACGACTTCGGATCATCCGGCGCACCCCAGTTGCCCTGGCCATCGACCAGGGTATAGCGGTAGCTGAACGGCTGCGCCATCAGCACCATGGCCTCGTAGCAGGCCGAATCGCCATGGGGATGGAACTTGCCGAGCACGTCACCGACg < 1:2115639/150‑1 (MQ=255) cGACTTCGGATCATCCGGCGCACCCCAGTTGCCCTGGCCATCGACCAGGGTATAGCGGTAGCTGAACGGCTGCGCCATCAGCACCATGGCCTCGTAGCAGGCCGAATCGCCATGGGGATGGAACTTGCCGAGCACGTCACCGACGGT‑ACg > 1:1842249/1‑150 (MQ=255) gACTTCGGATCATCCGGCGCACCCCAGTTGCCCTGGCCATCGACCAGGGTATAGCGGTAGCTGAACGGCTGCGCCATCAGCACCATGGCCTCGTAGCAGGCCGAATCGCCATGGGGATGGAACTTGCCGAGCACGTCACCGACGGT‑ACGt > 1:763124/1‑150 (MQ=255) ttCGGATCATCCGGCGCACCCCAGTTGCCCTGGCCATCGACCAGGGTATAGCGGTAGCTGAACGGCTGCGCCATCAGCACCATGGCCTCGTAGCAGGCCGAATCGCCATGGGGATGGAACTTGCCGAGCACGTCACCGACGGT‑ACGTGcc > 2:456546/1‑150 (MQ=255) tCGGATCATCCGGCGCACCCCAGTTGCCCTGGCCATCGACCAGGGTATAGCGGTAGCTGAACGGCTGCGCCATCAGCACCATTGCCTCGTAGCAGTCCGAATCGCCATGGGGATGGACCTTGCAGAGCACGT‑ACCGTCGGTGACGTGctc < 1:55364/150‑3 (MQ=255) cGGATCCTCCGGCGCACGCCAGTTGCCCTGGCCATCGACCAGGGTATAGCAGTCGGTAGATGCACGGCAAAACAACACCATGGCCTCGTATGAGGCCGCATCGCCATGGGGATGGAACTTGCCGAGCACGT‑ACCGTCGGTGACGTGctcg < 1:551568/150‑4 (MQ=255) tcCGGCGCACCCCAGTTGCCCTGGCCATCGACCAGGGTATAGCGGTAGCTGAACGGCTGCGCCATCAGCACCATGGCCTCGTAGCAGGCCGAATCGCCATGGGGATGGAACTTGCCGAGCACGT‑ACCGTCGGTGACGTGctc < 1:439979/142‑3 (MQ=255) tcCGGCGCACCCCAGTTGCCCTGGCCATCGACCAGGGTATAGCGGTAGCTGAACGGCTGCGCCATCAGCACCATGGCCTCGTAGCAGGCCGAATCGCCATGGGGATGGAACTTGCCGAGCACGT‑ACCGTCGGTGACGTGctc > 2:439979/1‑140 (MQ=255) cGGCGCACCCCAGTTGCCCTGGCCATCGACCAGGGTATAGCGGTAGCTGAACGGCTGCGCCATCAGCACCATGGCCTCGTAGCAGGCCGAATCGCCATGGGGATGGAACTTGCCGAGCACGTCACCGACGGT‑ACGTGCCGACTTCTtgtg < 1:1115424/150‑1 (MQ=255) ggCGCACCCCAGTTGCCCTGGCCATCGACCAGGGTATAGCGGTAGCTGAACGGCTGCGCCATCAGCACCATGGCCTCGTAGCAGGCCGAATCGCCATGGGGATGGAACTTGCCGAGCACGTCACCGACGGT‑ACGTGCCGACTTCTTGTGc < 1:873542/150‑1 (MQ=255) cgcACCCCAGTTGCCCTGGCCATCGACCAGGGTATAGCGGTAGCTGAACGGCTGCGCCATCAGCACCATTGCCTCGTAGCAGGCCGAATCGCCATGGGGATGGAACTTGCCGAGCACGTCACCGACGGT‑ACGTGCCGACTTCTTGTGCtt < 1:1490285/150‑1 (MQ=255) gcACCCCAGTTGCCCTGGCCATCGACCAGGGTATAGCGGTAGCTGAACGGCTGCGCCATCAGCACCATGGCCTCGTAGCAGGCCGAATCGCCATGGGGATGGAACTTGCCGAGCACGTCACCGACGGT‑ACGTGCCGACTTCTTGTGCTTg < 1:456546/150‑1 (MQ=255) aCCCCAGTTGCCCTGGCCATCGACCAGGGTATAGCGGTAGCTGAACGGCTGCGCCATCAGCACCATGGCCTCGTAGCAGGCCGAATCGCCATGGGGATGGAACTTGCCGAGCACGTCACCGACGGT‑ACGTGCCGACTTCTTGTGCTTggc > 2:1471512/1‑150 (MQ=255) cgaGTTGCCCTGGCCAGCGACCAGGGTATAGCGGTAGCTGAACGGCTGCGCCATCAGCACCATGGCCTCGTAGCAGGCCGAATCGCCATCGGGATGGAACTTGCCGAGCACGTCACCGACGGT‑ACGTGCCGACTTCTTGTGCTTggcatc < 2:202760/148‑1 (MQ=255) cAGTTGCCCTGGCCATCGACCAGGGTATAGCGGTAGCTGAACGGCTGCGCCATCAGCACCATGGCCTCGTAGCAGGCCGAATCGCCATGGGGATGGAACTTGCCGAGCACGTCACCGACGGT‑ACGTGCTGACTTCTTGTGCTTggcatcg > 1:2107508/1‑150 (MQ=255) aGTTGCCCTGGCCATCGACCAGGGTATAGCGGTAGCTGAACGGCTGCGCCATCAGCACCATGGACTAGTAGCAGGCCGAATCGACATGGGGATGGAACTTGCCGAGCACGTCACCGACGGT‑ACGTGCCGACTTCTTGTGCTTggcatcgg > 2:1477103/1‑150 (MQ=255) ttGCCCTGGCCATCGACCAGGGTATAGCGGTAGCTGAACGGCTGCGCCATCAGCACCATGGCCAAGTAGCAGTCCGAATCGCCATGGGGATGGAACTTGCCGAGCACGTCACCGACGGT‑ACGTGCCGACTTCTTGTGCTTggcatcggca < 1:151815/150‑1 (MQ=255) cccTGGCCATCGACCAGGGTATAGCGGTAGCTGAACGGCTGCGCCATCAGCACCATGGCCTCGTAGCAGGCCGAATCGCCATGGGGATGGAACTTGCCGAGCACGTCACCGACGGT‑ACGTGCCGACTTCTTGTGCTTggcatcg > 2:1476745/1‑144 (MQ=255) cccTGGCCATCGACCAGGGTATAGCGGTAGCTGAACGGCTGCGCCATCAGCACCATGGCCTCGTAGCAGGCCGAATCGCCATGGGGATGGAACTTGCCGAGCACGTCACCGACGGT‑ACGTGCCGACTTCTTGTGCTTggcatcg < 1:1476745/144‑1 (MQ=255) cccTGGCCATCGACCAGGGTATAGCGGTAGCTGAACGGCTGCGCCATCAGCACCATGGCCTCGTAGCAGGCCGAATCGCCATGGGGATGGAACTTGCCGAGCACGTCACCGACGGT‑ACGTGCCGACTTCTTGTGCTTGgcatcggcatcg > 2:2271740/1‑150 (MQ=255) cccTGGCCATCGACAAGGGTATAGGGGTAGCTGGACGGCTGAGCCATCAGCACCATAGCCTCGCCGCAGGCCGAATCGCCATGGGGATGGAACTTGCCGAGCACGTCACCGACGGT‑ACGTGCCGACTTCTTGTGCTTgccataggcatgg > 2:282049/1‑148 (MQ=255) tGGCCATCGACCAGGGTATAGCGGTAGCTGAACGTCTGCGCCATCAGCACCATGGCCTCGTAGCAGGCCGAATCGCCATGGGGATGAAACTTGCAGAGCAGGTCAGCGACGGG‑ACGTGCCGGCTTCTTGTGCTTGGCATCGGCATCGAGc > 2:1728244/1‑150 (MQ=255) tGGCCATCGACCAGGGTATAGCGGTAGCTGAACGGCTGCGCCATCAGCACCATGGCCTCGTAGCAGGCCGAATCGCCATGGGGATGGAACTTGCCGAGCACGTCACCGACg > 2:957119/1‑111 (MQ=255) tGGCCATCGACCAGGGTATAGCGGTAGCTGAACGGCTGCGCCATCAGCACCATGGCCTCGTAGCAGGCCGAATCGCCATGGGGATGGAACTTGCCGAGCACGTCACCGACGGT‑ACGTGCCGACTTCTTGTGCTTGGCATCGGCATCGAGc < 1:25789/150‑1 (MQ=255) ggCCATCGACCAGGGTATAGCGGTAGCTGAACGGCTGCGCCATCAGCACCATGGCCTCGTAGCAGGCCGAATCGCCATGGGGATGGAACTTGCCGAGCACGTCACCGACGGT‑ACGTGCCGACTTCTTGTGCTTGGCATCGGCATCGAGcc < 1:1650722/150‑1 (MQ=255) gCCATCGACCAGGGTATAGCGGTAGCTGAACGGCTGCGCCATCAGCACCATGGCCTCGTAGCAGGCCGAATCGCCATGGGGATGGAACTTGCCGAGCACGTCACCGACGGT‑ACGTGCCGACTTCTTGTGCTTGGCATCGGCATCGAGccc < 2:769915/150‑1 (MQ=255) ccATCGACCAGGGTATAGCGGTAGCTGAACGGCTGCGCCATCAGCACCATGGCCTCGTAGCAGGCCGAATCGCCATGGGGATGGAACTTGCCGAGCACGTCACCGACGGT‑ACGTGCCGACTTCTTGTGCTTGGCATCGGCATCGAGcccc < 2:455677/150‑1 (MQ=255) ccATCGACCAGGGTATAGCGGTAGCTGAACGGCTGCGCCATCAGCACCATGGCCTCGTAGCAGGCCGAATCGCCATGGGGATGGAACTTGCCGAGCACGTCACCGACGGT‑ACGTGCCGACTTCTTGTGCTTGGCATCGGCATCGAGcccc < 1:410392/150‑1 (MQ=255) aTCGACCAGGGTATAGCGGTAGCTGAACGGCTGCGCCATCAGCACCATGGCCTCGTAGCAGGCCGAATCGCCATGGGGATGGAACTTGCCGAGCACGTCACCGACGGT‑ACGTGCCGACTTCTTGTGCTTGGCATCGGCATCGAGCCCCaa > 2:253688/1‑150 (MQ=255) cGACCAGGGTATAGCGGTAGCTGAACGGCTGCGCCATCAGCACCATGGCCTCGTAGCAGGCCGAATCGCCATGGGGATGGAACTTGCCGAGCACGTCACCGACGGT‑ACGTGCCGACTTCTTGTGCTTGGCATCGGCATCGAGCCCCAACt < 2:2107508/150‑1 (MQ=255) gACCAGGGTATAGCGGTAGCTGAACGGCTGCGCCATCAGCACCATGGCCTCGTAGCAGGCCGAATCGCCATGGGGATGGAACTTGCCGAGCACGTCACCGACGGT‑ACGTGCCGACTTCTTGTGCTTGGCATCGGCATCGAGCCCCAACTc < 2:1692044/150‑1 (MQ=255) cAGGGTATAGCGGTAGCTGAACGGCTGCGCCATCAGCACCATGGCCTCGTAGCAGGCCGAATCCACATGGGGACGGAACTTGCCGAGCACGCCACCGACGGT‑AAGTGCCGACTTCTTGTCATTGGCATCGGCATCGAGCcacacgccgcc > 2:107648/1‑143 (MQ=255) aGGGTATAGCGGTAGCTGAACGGCTGCGCCATCAGCACCATGGCCTCGTAGCAGGCCGAATCGCCATGGGGATGGAACTTGCCGAGCACGTCACCGACGGT‑ACGTGCCGACTTCTTGTGCTTGGCATCGGCATCGAGCCCCAAc > 1:1606901/1‑144 (MQ=255) ataGCGGTAGCTGAACGGCTGCGCCATCAGCACCATGGCCTCGTAGCAGGCCGAATCGCCATGGGGATGGAACTTGCCGAGCACGTCACCGACGGT‑ACGTGCCGACTTCTTGTGCTTGGCATCGGCATCGAGCCCCAACTCGCTCATGGc < 1:1427796/150‑1 (MQ=255) ggTAGCTGAACGGCTGCGCCATCAGCACCATGGCCTCGTAGCAGGCCGCACCGCCATGGGGATGGAACTTGCCGAGCACGTCACCGACGGT‑ACGTGCCGACTTCTTGTGCTTGGCATCGGCATCGAGCCCCAACTCGCTCATGGCGTAGa < 1:2331534/150‑1 (MQ=255) aGCTGAACGGCTGCGCCATCAGCACCATGGCCTCGTAGCAGGCCGAATCGCCATGGGGATGGAACTTGCCGAGCACGTGGCCGACGGT‑ACGTGCCGACTTCTTGTGCTTGGCATCGGCATCGAGCCCCAACTCGCTCATGGCGTAGACGa > 1:1355050/1‑150 (MQ=255) aGCTGAACGGCTGCGCCATCAGCACCATGGCCTCGTAGCAGGCCGAATCGCCATGGGGATGGAACTTGCCGAGCACGTAACCGACGGT‑ACGTGCCGACTTCTTGTGCTTGGCATCGGCATCGAGCCCCAACTCGCTCATGGCGTAGACGa < 1:742452/150‑1 (MQ=255) gCTGAACGGCTGCGCCATCAGCACCATGGCCTCGTAGCAGGCCGAATCGCCATGGGGATGGAACTTGCCGAGCACGTCACCGACGGT‑ACGTGCCGACTTCTTGTGCTTGGCATCGGCATCGAGCCCCAACTCGCTCATGGCGTAGACGAt < 1:1728244/150‑1 (MQ=255) gCTGAACGGCTGCGCCATCAGCACCATGGCCTCGTAGCAGACCGAATCGCCATGGGGATGGAACTTGCCGAGCACGTCACCGACGGT‑ACGTGCCGACTTCTTGTGCTTGGCATCGGCATCGAGCCCCAACTCGCTCATGGCGTAGACGAt < 2:711541/150‑1 (MQ=255) gCTGAACGGCTGCCCCATCAGCACCACGGCCTCGTAGCAGGCCGAATCGCCATGGGGCTGGAACTTGCCGTGCACGTCACCGACGGT‑ACGTGCCGACTTCTTGTGCTTGGCACCGGCATCGAGCCCCAACTCGCTCATGGCGTACACGAt < 2:692540/150‑1 (MQ=255) tGAACGGCTGCGCCATCAGCACCATGGCCTCGTAGCAGGCCGAATCGCCATGGGGATGGAACTTGCCGAGCACGTCACCGACGGT‑ACGTGCCGACTTCTTGTGCTTGGCATCGGCATCGAGCCCCAACTCGCTCATGGCGTAGACGATGc < 1:1471512/150‑1 (MQ=255) tGAACGGCTGCGCCATCAGCACCATGGCCTCGTAGCAGGCCGAATCGCCATGGGGATGGAACTTGCCGAGCACGTCACCGACGGT‑ACGTGCCGACTTCTTGTGCTTGGCATCGGCATCGAGCCCCAACTCGCTCATGGCGTAGACGATGc < 1:673268/150‑1 (MQ=255) tGAACGGCTGCGCCATCAGCACCATGGCCTCGTAGCAGGCCGAATCGCCATGGGGATGGAACTTGCCGAGCACGTCACCGACGGT‑ACGTGCCGACTTCTTGTGCTTGGCATCGGCATCGAGCCCCAACTCGCTCATGGCGTAGACGATGc > 1:13554/1‑150 (MQ=255) tGAACGGCTGCGCCATAAGGACCATGGCCTCGTAGCAGGCCGAATCGCCATGGGGATGGAACTTGCCGAGCACGTCACCGACGGT‑ACGTGCCGACTTCTTGTGCTTGGCATCGGCATCGAGCCCCAACTCGCTCATGGCGTAGACGATGc > 2:595323/1‑150 (MQ=255) gAACGGCTGCGCCATCAGCACCATGGCCTCGTAGCAGGCCGAATCGCCATGGGGATGGAACTTGCCGAGCACGTCACCGACGGT‑ACGTGGCGACTTCTTGTGCTTGGCATCGGCATCGAGCCCCAACTCGCTCATGGCGTAGACGATGCg > 1:258426/1‑150 (MQ=255) gAACGGCTGCGCCATCAGCACCATGGCCTCGTAGCAGGCCGAATCGCCATGGGGATGGAACTTGCCGAGCACGTCACCGACGGT‑ACGTGCCGActtc > 1:2242684/1‑97 (MQ=255) gAACGGCTGCGCCATCAGCACCATGGCCTCGTAGCAGGCCGAATCGCCATGGGGATGGAACTTGCCGAGCACGTCACCGACGGT‑ACGTGCCGActtc < 2:2242684/97‑1 (MQ=255) aaCGGCTGCGCCATCAGCACCATGGCCTCGTAGCAGGCCGAATCGCCATGGGGATGGAACTTGCCGAGCACGTCACCGACGGT‑ACGTGCCGACTTCTTGTGCTTGGCATCGGCATCGAGCCCCAACTCGCTCATGGCGTAGACGATGCGt > 1:1460824/1‑150 (MQ=255) gCTGCGCCATCAGCACCATGGCCTCGTAGCAGGCCGAATCGCCATGGGGATGGAACTTGCCGAGCACGTCACCGACGGT‑ACGTGCCGACTATTTTGGCTTGGCATCGGCATCGAGCCCCAACTCGCTCATGGCGTAGACGATGCGTCGCt > 1:1234088/1‑150 (MQ=255) ccATCAGCACCATGGCCTCGTAGCAGGCCGAATCGCCATGGGGATGGAACTTGCCGAGCACGTCACCGACGGT‑ACGTGCCGACTTCTTGTGCTTGGCATCGGCATCGAGCCCCAACTCGCTCATg < 1:1415779/125‑1 (MQ=255) ccATCAGCACCATGGCCTCGTAGCAGGCCGAATCGCCATGGGGATGGAACTTGCCGAGCACGTCACCGACGGT‑ACGTGCCGACTTCTTGTGCTTGGCATCGGCATCGAGCCCCAACTCGCTCATg > 2:1415779/1‑125 (MQ=255) aTCAGCACCATGGCCTCGTAGCAGGCCGAATCGCCATGGGGATGGAACTTGCCGAGCACGTCACCGACGGT‑ACGTGCCGACTTCTTGTGCTTGGCATCGGCATCGAGCCCCAACTCGCTCATGGCGTAGACGATGCGTCGCTGCACCGGc < 2:258426/150‑1 (MQ=255) tCAGCACCATGGCCTCGTAGCAGGCCGAATCGCCATGGGGATGGAACTTGCCGAGCACGTCACCGACGGT‑ACGTGCCGACTTCTTGTGCTTGGCATCGGCATCGAGCCCCAACTCGCTCATGGCGTAGACGATGCGTCGCTGCACCGGCt > 1:628933/1‑150 (MQ=255) tCAGCACCATGGCCTCGTAGCAGGCCGAATCGCCATGGGGATGGAACTTGCCGAGCACGT‑ACCGTCGGTGACGTGctc < 1:1443406/78‑3 (MQ=37) tCAGCACCATGGCCTCGTAGCAGGCCGAATCGCCATGGGGATGGAACTTGCCGAGCACGT‑ACCGTCGGTGACGTGctc > 2:1443406/1‑76 (MQ=37) aGCACCATGGCCTCGTAGCAGGCCGAATCGCCATGGGGAGGGAACTGGCCGAGCACGTCACCGACGGT‑ACGTGCCGACTTCTTGTGCTTGGCATCGGCATCGAGCCCCAACTCGCTCATGGCGTAGACGATGCGTCGCTGCACCGGCTTc > 1:429441/1‑150 (MQ=255) gCACCATGGCCTCGTAGCAGGCCGAATCGCCATGGGGATGGAACTCAACAAGCACGTCACCGACGGT‑ACGTGCCGACTTCTTGTGCTTGGCATCGGCATCGAGCCCCAACTCGCTCATGGCGTAGACGATGCGTCGCTGCACCGGCTTCa < 1:759252/150‑1 (MQ=255) ccATGGCCTCGTAGCAGGCCGAATCGCCATGGGGATGGAACTTGCCGAGCACGTCACCGACGGT‑ACGTGCCGACTTCTTGTGCTTGGCATCGGCATCGAGCCCCAACTCGCTCATGGCGTAGACGATGCGTCGCTGCACCGGCTTCAGGc > 1:1890128/1‑150 (MQ=255) cATGGCCTCGTAGCAGGCCGAATCGCCATGGGGATGGAACTTGCCGAGCACGTCACCGACGGT‑ACGTGCCGACTTCTTGTGCTTGGCATCGGCATCGAGCCCCAACTCGCTCATGGCGTAGAc > 2:1285207/1‑123 (MQ=255) aTGGCCTCGTAGCAGGCCGAATCGCCATGGGGATGGAACTTGCCGAGCACGTCACCGACGGT‑ACGTGCCGACTTCTTGTGCTTGGCATCGGCATCGAGCCCCAACTCGCTCATGGCGTAGACGATGCGTCGCTGCACCGGCTTCAGGCCg > 1:184983/1‑150 (MQ=255) tGGCCTCGTAGCAGGCCGAATCGCCATGGGGATGGAACTTGCCGAGCACGTCACCGACGGT‑ACGTGCCGACTTCTTGTGCTTGGCATCGGCATCGAGCCCCAACTCGCTCATGGCGTAGACGATGCGTCGCTGCACCg > 1:1506832/1‑138 (MQ=255) tGGCCTCGTAGCAGGCCGAATCGCCATGGGGATGGAACTTGCCGAGCACGTCACCGACGGT‑ACGTGCCGACTTCTTGTGCTTGGCATCGGCATCGAGCCCCAACTCGCTCATGGCGTAGACGATGCGTCGCTGCACCg < 2:1506832/138‑1 (MQ=255) ccTCGTAGCAGGCCGAATCGCCATGGGGATGGAACTTGCCGAGCACGTCACCGACGGT‑ACGTGCCGActtctt > 2:217078/1‑73 (MQ=255) ccTCGTAGCAGGCCGAATCGCCATGGGGATGGAACTTGCCGAGCACGTCACCGACGGT‑ACGTGCCGActtctt < 1:217078/73‑1 (MQ=255) cTCGTAGCAGGCCGAATCGCCATGGGGATGGAACTTGCCGAGCACGTCACCGACGGT‑ACGTGCCGACTTCTTGTGCTTGGCATCGGCATCGAGCCCCAACTCGCTCATGGCGTAGACGATGCGTCGCTGCACCGGCTTCAGGCCGTCGcc > 2:1527955/1‑150 (MQ=255) cTCGTAGCAGGCCGAATCGCCATGGGGATGGAACTTGCCGAGCACGTCACCGACGGT‑ACGTGCCGACTTCTTGTGCTTGGCATCGGCATCGAGCCCCAACTCGCTCATGGCGTAGACGATGCGTCGCTGCACCGGCTTCAGGCCGTCGcc > 2:1990497/1‑150 (MQ=255) cGTAGCAGGCCGAATCGCCATGGGGATGGAACTTGCCGAGCACGTCACCGACGGT‑ACGTGCCGACTTCTTGTGCTTGGCATCGGCATCGAGCCCCAACTCGCTCATGGCGTAGACGATGCGTCGCTGCACCGGCTTCAGGCCGTCGCCGa < 1:253688/150‑1 (MQ=255) gAATCGCCATGGGGATGGAACTTGCCGAGCACGTCACCGACGGT‑ACGTGCCGACTTCTTGTGCTTGGCATCGGCATCGAGCCCCAACTCGCTCATGGCGTAGACGATGCGTCGCTGCACCGGCTTCAGGCCGTCGCCGATATGCGGCAAg > 2:2087239/1‑150 (MQ=255) aaTCGCCATGGGGATGGAACTTGCCGAGCACGTCACCGACGGT‑ACGTGCCGACTTCTTGTGCTTGGCATCGGCATCGAGCCCCAACTCGCTCATGGCGTAGACGATGCGTCGCTGCACCGGCTTCAGGCCGTCGCCGATATGCGGCAAgg > 1:1485183/1‑150 (MQ=255) aTCGCCATGGGGATGGAACTTGCCGAGCACGTCACCGACGGT‑ACGTGCCGACTTCTTGTGCTTGGCATCGGCATCGAGCCCCAACTCGCTCATGGCGTAGACGATGCGTCGCTGCACAGGGTTCAGGCCGTCGCCGATATGCGGCAAggg > 1:2031204/1‑149 (MQ=255) tCGCCATGGGGATGGAACTTGCCGAGCACGTCACCGACGGT‑ACGTGCCGACTTCTTGTGCTTGGCATCGGCATCGAGCCCCAACTCGCTCATGGCGTAGACGATGCGTCGCTGCACCGGCTTCAGGCCGTCGCCGATATGCGGCAAGGCa < 2:184983/150‑1 (MQ=255) ccATGGGGATGGAACTTGCCGAGCACGTCACCGACGGT‑ACGTGCCGACTTCTTGTGCTTGGCATCGGCATCGAGCCCCAACTCGCTCATGGCGTAGACGATGCGTCGCTGCACCGGCTTCAGGCCGTCGCCGATATGCGGCaa > 1:910045/1‑143 (MQ=255) ccATGGGGATGGAACTTGCCGAGCACGTCACCGACGGT‑ACGTGCCGACTTCTTGTGCTTGGCATCGGCATCGAGCCCCAACTCGCTCATGGCGTAGACGATGCGTCGCTGCACCGGCTTCAGGCCGTCGCCGATATGCGGCaa < 2:910045/143‑1 (MQ=255) ccATGGGGATGGAACTTGCCGAGCACGTCACCGACGGT‑ACGTGCCGACTTCTTGTGCTTGGCATCGGCATCGAGCCCCAACTCGCTCATGGCGTAGACGATGCGTCGCTGCACCGGCTTCAGGCCGTCGCCGATATGCGGCAAGGCACGa > 2:2358114/1‑150 (MQ=255) cATGGGGATGGAACTTGCCGAGCACGTCACCGACGGT‑ACGTGCCGACTTCTTGTGCTTGGCATCGGCATCGAGCCCCAACTCGCTCATGGCGTAGACGATGCGTCGCTGCACCGGCTTCAGGCCGTCGCCGATATGCGGCAAGGCACGAt > 2:971776/1‑150 (MQ=255) cATGGGGATGGAACTTGCCGAGCACGTCACCGACGGT‑ACGTGCCGACTTCTTGTGCTTGGCATCGGCATCGAGCCCCAACTCGCTCATGGCGTAGACGATGCGTCGCTGCACCGGCTTCAGGCCGTCGCCGATATGCGGCAAGGCACGAt > 1:1261291/1‑150 (MQ=255) aTGGGGATGGAACTTGCCGAGCACGTCACCGACGGT‑ACGTGCCGACTTCTTGTGCTTGGCATCGGCATCGAGCCCCAACTCGCTCATGGCGTAGACGATGCGTCGCTGCACCGGCTTCAGGCCGTCGCCGATATGCGGCAAGGCACGATc > 1:321507/1‑150 (MQ=255) aTGGGGATGGAACTTGCCGAGCACGTCACCGACGGT‑ACGTGCAGACTTGTTGCGCTTGGCATCTGCATCGAGCCCCAACTCGCTCATGGCGTAGACGATGCGTCGCTGCACCGGCTTCAGGCCGTCGCCGATATGCGGCAAGGCACGATc < 1:2343393/150‑1 (MQ=255) gATGGAACTTGCCGAGCACGTCACCGACGGT‑ACGTGCCGACTTCTTGTGCTTGGCATCGGCATCGAGCCCCAACTCGCTCATGGCGTAGACGATGCGTCGCTGCACCGGCTTCAGGCCGTCGCCGATATGCGGCAAGGCACGATCCATGa < 1:282049/150‑1 (MQ=255) gATGGAACTTGCCGAGCACGTCACCGACGGT‑ACGTGCCGACTTCTTGTGCTTGGCATCGGCATCGAGCCCCAACTCGCTCATGGCGTAGACGATGCGTCGCTGCACCGGCTTCAGGCCGTCGCCGATATGCGGCAAGGCACGATCCATGa > 1:795838/1‑150 (MQ=255) aTGGAACTTGCCGAGCACGTCACCGACGGT‑ACGTGCCGACTTCTTGTGCTTGGCATCGGCATCGAGCCCCAACTCGCTCATGGCGTAGACGATGCGt > 1:1045632/1‑97 (MQ=255) aTGGAACTTGCCGAGCACGTCACCGACGGT‑ACGTGCCGACTTCTTGTGCTTGGCATCGGCATCGAGCCCCAACTCGCTCATGGCGTAGACGATGCGt < 2:1045632/97‑1 (MQ=255) cTTGCCGAGCACGTCACCGACGGT‑ACGTGCCGACTTCTTGTGCTTGGCATCGGCATCGAGCCCCAACTCGCTCATGGCGTAGACGATGCGTCGCTGCACCGGCTTCAGGCCGTCGCCGATATGCGGCAAGGCACGATCCATGATCACGTa > 2:1250980/1‑150 (MQ=255) ttGCCGAGCACGTCACCGACGGT‑ACGTGCCGACTTCTTGTGCTTGGCATCGGCATCGAGCCCCAACTCGCTCATGGCGTAGACGATGCGTCGCTGCACCGGCTTCAGGCCGTCGCCGATATGCGGCAAGGCACGATCCATGATCACGTAc > 2:68992/1‑150 (MQ=255) gCCGAGCACGTCACCGACGGT‑ACGTGCCGACTTCTTGTGCTTGGCATCGGCATCGAGCCCCAACTCGCTCATGGCGTAGACGATGCGTCGCTGCACCGGCTTCAGGCCGTCGCCGATATGCGGCAAGGCACGATCCATGATCACGTACAt < 2:1890128/150‑1 (MQ=255) ccGAGCACGTCACCGACGGT‑ACGTGCCGACTTCTTGTGCTTGGCATCGGCATCGAGCCCCAACTCGCTCATGGCGTAGACGATGCGTCGCTGCACCGGCTTCAGGCCGTCGCCGATATGCGGCAAGGCACGATCCATGATCACGTACATg < 2:2083556/150‑1 (MQ=255) tcggCACGT‑ACCGTCGGTGACGTGCCGACTTCTTGTGCTTGGCATCGGCATCGAGCCCCAACTCGCTCATGGCGTAGACGATGCGTCGCTGCACCGGCTTCAGGCCGTCGCCGATATGCGGCAAGGCACGATCCATGATCACGTACAt < 2:1147853/145‑1 (MQ=255) tcggCACGT‑ACCGTCGGTGACGTGCCGACTTCTTGTGCTTGGCATCGGCATCGAGCCCCAACTCGCTCATGGCGTAGACGATGCGTCGCTGCACCGGCTTCAGGCCGTCGCCGATATGCGGCAAGGCACGATCCATGATCACGTACAt > 1:1147853/4‑148 (MQ=255) cGAGCACGTCACCGACGGT‑ACGTGCCGACTTCTTGTGCTTGGCATCGGCATCGAGCCCCAACTCGCTCATGGCGTAGCCGATGCGTCGCTGCACCGGCTTCAGGCCGTCGCCGATATGCGGCAAGGCACGATCCATGATCACGTACATg < 1:1056179/149‑1 (MQ=255) cGAGCACGTCACCGACGGT‑ACGTGCCGACTTCTTGTGCTTGGCATCGGCATCGAGCCCCAACTCGCTCATGGCGTAGACGATGCGTCGCTGCACCGGCTTCAGGCCGTCGCCGATATGCGGCAAGGCACGATCCATGATCACGTACATg > 2:1056179/1‑149 (MQ=255) gAGCACGTCACCGACGGT‑ACGTGCCGACTTCTTGTGCTTGGCATCGGCATCGAGCCCCAACTCGCTCATGGCGTAGACGATGCGTCGCTGCACCGGCTTCAGGCCGTCGCCGATATGCGGCAAGGCACGATCCATGATCACGTACATGGa < 1:107648/150‑1 (MQ=255) gAGCACGTCACCGACGGT‑ACGTGCCGACTTCTTGTGCTTGGCATCGGCATCGAGCCCCAACTCGCTCATGGCGTAGACGATGCGTCGCTGCACCGGCTTCACGCCGTCGCCGATATGCGGCAAGGCACGATCCATGATCACGTACATGGa < 2:2263219/150‑1 (MQ=255) aGCACGTCACCGACGGT‑ACGTGCCGACTTCTTGTGCTTGGCATCGGCATCGAGCCCCAACTCGCTCATGGCGTAGACGATGCGTCGCTGCACCGGCTTCAGGCCGTCGCCGATATGCGGCAAGGCACGATCCATGATCACGTACATGGag < 2:1485183/150‑1 (MQ=255) aCGTCACCGACGGT‑ACGTGCCGACTTCTTGTGCTTGGCATCGGCATCGAGCCCCAACTCGCTCATGGCGTAGACGATGCGTCGCTGCACCGGCTTCAGGCCGTCGCCGATATGCGGCAAGGCACGATCCAt < 2:1212391/131‑1 (MQ=255) aCGTCACCGACGGT‑ACGTGCCGACTTCTTGTGCTTGGCATCGGCATCGAGCCCCAACTCGCTCATGGCGTAGACGATGCGTCGCTGCACCGGCTTCAGGCCGTCGCCGATATGCGGCAAGGCACGATCCAt > 1:1212391/1‑131 (MQ=255) gTCACCGACGGT‑ACGTGCCGACTTCTTGTGCTTGGCATCGGCATCGAGCCCCGACTCGCTCATGGCGTAGACGATGCGTCGCTGCACCGGCTTCAGGCCGTCGCCGATATGCGGCAAGGCACGATCCa > 2:184643/1‑128 (MQ=255) gTCACCGACGGT‑ACGTGCCGACTTCTTGTGCTTGGCATCGGCATCGAGCCCCAACTCGCTCATGGCGTAGACGATGCGTCGCTGCACCGGCTTCAGGCCGTCGCCGATATGCGGCAAGGCACGATCCa < 1:184643/128‑1 (MQ=255) gTCACCGACGGT‑ACGTGCCGACTTCTTGTGCTTGGCATCGGCATCGAGCCCCAACTCGCGCATGGCGTAGACGATGCGTCGCTGCACCGGCTTCAGGCCGTCGCCGATATGCGGCAAGGCACGATCCATGATCACGTACATGGAGTAGtt > 1:1513131/1‑150 (MQ=255) tCACCGACGGT‑ACGTGCCGACTTCTTGTGCTTGGCATCGGCATCGAGCCCCAACTCGCTCATGGCGTAGACGATGCGTCGCTGCACCGGCTTCAGGCCGTCGCCGATATGCGGCAAGGCACGATCCATGATCACGTACATGGAGTAGTTg > 2:311181/1‑150 (MQ=255) cACCGACGGT‑ACGTGCCGACTTCTTGTGCTTGGCATCGGCATCGAGCCCCAACTCGCTCATGGCGTAGACGATGCGTCGCTGCACCGGCTTCAGGCCGTCGCCGATATGCGGCAAGGCACGATCCATGATCACGTACATGGAGTAGTTGa < 2:1261291/150‑1 (MQ=255) | GCGAACGACTTCGGATCATCCGGCGCACCCCAGTTGCCCTGGCCATCGACCAGGGTATAGCGGTAGCTGAACGGCTGCGCCATCAGCACCATGGCCTCGTAGCAGGCCGAATCGCCATGGGGATGGAACTTGCCGAGCACGTCACCGACGGT‑ACGTGCCGACTTCTTGTGCTTGGCATCGGCATCGAGCCCCAACTCGCTCATGGCGTAGACGATGCGTCGCTGCACCGGCTTCAGGCCGTCGCCGATATGCGGCAAGGCACGATCCATGATCACGTACATGGAGTAGTTGA > NC_002947/5585415‑5585706 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |