| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,620,389 | Δ1 bp | 6.7% | intergenic (‑113/‑88) | opdH ← / → tctD | tricarboxylate‑specific outer membrane porin/transcriptional regulator TctD |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,620,389 | 0 | G | . | 6.7% | 376.4 / 21.3 | 119 | intergenic (‑113/‑88) | opdH/tctD | tricarboxylate‑specific outer membrane porin/transcriptional regulator TctD |
| Reads supporting (aligned to +/- strand): ref base G (58/53); new base . (3/5); total (61/58) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.84e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.98e-01 | |||||||||||
Only 100 of 119 total aligned reads displayed.
TAGGCGCGAACGCCTGCGGCTGCGATGACAGCATCGTCGATGACTCCGTTTATTGTTCTTATTCG‑‑TTGCACCTTGCTGGTGCTTTTTTCGGCGCGAAGGGCGACCGTGGTGCGATGCTAGGCAACGAACCTTTCGCTAACCTTTCAGCG‑TGAAAGGTTTGTCACGAGGGGCTTCACAGGCGTGGTGACAGCGGTACACTCCGCGCCACCGCCCCACCCGAGCAGGGAGAATCCGATGCGTGTGCTACTGGTCGAAGACCACCTGCAACTGGCCGAAAGCGTGGCCCTGGCC > NC_002947/1620243‑1620533 | tAGGCGCGAACGCCTGCGGCTGCGATGACAGCATCGTCGATGACTCCGTTTATTGTTCTTATTCG‑‑TTGCACCTTGCTGGTGCTTTTTTCGGCGCGAAGGGCGACCGTGGTGCGATGCTAGGCAACGAACCTTTCGCTAACCTTTCAGCG‑t < 1:985885/150‑1 (MQ=255)tAGGCGCGAACGCCTGCGGCTGCGATGACAGCATCGTCGATGACTCCGTTTATTGTTCTTATTCG‑‑TTGCACCTTGCTGGTGCTTTTTTCGGCGCGAAGGGCGACCGTGGTGCGATGCTAGGCAACGAACCTTTCGCTAACCTTTCAGCG‑t < 2:1898946/150‑1 (MQ=255) ggCGCGAACGCCTGCGGCTGCGATGACAGCATCGTCGATGACTCCGTTTATTGTTCTTATTCG‑‑TTGCACCTTGCTGGTGCTTTTTTCGGCGCGAAGGGCGACCGTGGTGCGATGCTAGGCAACGAACCTTTCGCTAACCTTTCAGCG‑TGa > 1:2265786/1‑150 (MQ=255) cgcgAACGCCTGCGGCTGCGATGACAGCATCGTCGATGACTCCGTTTATTGTTCTTATTCG‑‑TTGCACCTTGCTGGTGCTTTTTTCGGCGCGAAGGGCGACCGTGGTGCGATGCTAGGCAACGAACCTTTCGCTAACCTTTCAGCG‑TGaaa < 1:1679469/150‑1 (MQ=255) cgAACGCCTGCGGCTGCGATGACAGCATCGTCGATGACTCCGTTTATTGTTCTTATTCG‑‑TTGCACCTTGCTGGTGCTTTTTTCGGCGCGAAGGGCGACCGTGGTGCGATGCTAGGCAACGAACCTTTCGCTAACCTTTCAGCG‑TGAAAgg > 1:509988/1‑150 (MQ=255) gAACGCCTGCGGCTGCGATGACAGCATCGTCGATGACTCCGTTTATTGTTCTTATTCG‑‑TTGCACCTTGCTGGTGCTTTTTTCGGCGCGAAGGGCGACCGTGGTGCGATGCTAGGCAACGAACCTTTCGCTAACCTTTCAGCG‑TGaaa < 1:2335601/147‑1 (MQ=255) gAACGCCTGCGGCTGCGATGACAGCATCGTCGATGACTCCGTTTATTGTTCTTATTCG‑‑TTGCACCTTGCTGGTGCTTTTTTCGGCGCGAAGGGCGACCGTGGTGCGATGCTAGGCAACGAACCTTTCGCTAACCTTTCAGCG‑TGaaa > 2:2335601/1‑147 (MQ=255) aaCGCCTGCGGCTGCGATGACAGCATCGTCGACCAACACCCTCA‑‑GATCCTTTTCGCCTTTCACCTTGCTGGCGCTGTTTTCGGCGCGAAGGGCGACCGTGGTGCGATGCTAGGCAACGAACCTTTCGCTAACCTTTCAGCG‑TGCAAGGtt > 1:420849/1‑150 (MQ=255) aCGCCTGCGGCTGCGATGACAGCATCGTCGATGTCTCCGTTTATTGTTCTTATTCG‑‑TTGCACCTTGCTGGTGCTTTTTTCGGCGCGAAGGGCGACCGTGGTGCGATGCTAGGCAACGAACCTTTCGCTAACCTTTCA‑CGCTGAAAGGtta < 1:984170/150‑2 (MQ=255) aCGCCTGCGGCTGCGATGACAGCATCGTCGATGACTCCGTTTATTGTTCTTATTCG‑‑TTGCACCTTGCTGGTGCTTTTTTCGGCGCGAAGGGCGACCGTGGTGCGATGCTAGGCAACGAACCTTTCGCTAACCTTTCA‑CGCTGAAAGGtta < 2:179886/150‑2 (MQ=255) cTGCGGCTGCGATGACAGCATCGTCGATGACTCCGTTTATTGTTCTTATTCG‑‑TTGCACCTTGCTGGTGCTTTTTTCGGCGCGAAGGGCGACCGTGGTGCGATGCTAGGCAACGAACCTTTCGCTAACCTTTCAGCG‑TGAAAGGTTTGTCa > 2:2254450/1‑150 (MQ=255) ggCTGCGATGACAGCATCGTCGATGACTCCGTTTATTGTTCTTATTCG‑‑TTGCACCTTGCTGGTGCTTTTTTCGGCGCGAAGGGCGACCGTGGTGCGATGCTAGGCAACGAACCTTTCGCTAACCTTTCAGCG‑TGAAAGGTTTGTCACgtg < 1:1552749/150‑3 (MQ=255) ggCTGCGATGACAGCATCGTCGATGACTCCGTTTATTGTTCTTATTCG‑‑TTGCACCTTGCTGGTGCTTTTTTCGGCGCGAAGGGCGACCGTGGTGCGATGCTAGGCAACGAACCTTTCGCTAACCTTTCAGCG‑TGAAAGGTTTGTCACGAg < 1:2254450/150‑1 (MQ=255) tGACAGCATCGTCGATGACTCCGTTTATTGTTCTTATTCG‑‑TTGCACCTTGCTGGTGCTTTTTTCGGCGCGAAGGGCGACCGTGGTGCGATGCTAGGCAACGAACCTTTCGCTAACCTTTCAGCG‑TGAAAGGTTTGTCACGAGGGGCTTca > 2:97161/1‑150 (MQ=255) aCAGCATCGTCGATGACTCCGTTTATTGTTCTTATTCG‑‑TTGCACCTTGCTGGTGCTTTTTTCGGCGCGAAGGGCGACCGTGGTGCGATGCTAGGCAACGAACCTTTCGCTAACCTTTCAGCG‑TGAAAGGTTTGTCACGAGGGGCTTcaca > 1:188406/1‑150 (MQ=255) gATGACTCCGTTTATTGTTCTTATTCG‑‑TTGCACCTTGCTGGTGCTTTTTTCGGCGCGAAGGGCGACCGTGGTGCGATGCTAGGCAACGAACCTTTCGCTAACCTTTCAGCG‑TGAAAGGtt < 1:1230339/120‑1 (MQ=255) gATGACTCCGTTTATTGTTCTTATTCG‑‑TTGCACCTTGCTGGTGCTTTTTTCGGCGCGAAGGGCGACCGTGGTGCGATGCTAGGCAACGAACCTTTCGCTAACCTTTCAGCG‑TGAAAGGtt > 2:1230339/1‑120 (MQ=255) gACTCCGTTTATTGTTCTTATTCG‑‑TTGCACCTTGCTGGTGCTTTTTTCGGCGCGAAGGGCGACCGTGGTGCGATGCTAGGCAACGAACCTTTCGCTAACCTTTCAGCG‑TGAAAGGTTTGTCACGAGGGGCTTCACAGGCGTGGTGACAGc < 2:2183600/150‑1 (MQ=255) tCCGTTTATTGTTCTTATTCG‑‑TTGCACCTTGCTGGTGCTTTTTTCGGCGCGAAGGGCGACCGTGGTGCGATGCTAGGCAACGAACCTTTCGCTAACCTTTCAGCG‑TGAAAGGTTTGTCACGAGGGGCTTCACAGGCGTGGTGACAGCGGt > 1:1217403/1‑150 (MQ=255) tCCGTTTATTGTTCTTATTCG‑‑TTGCACCTTGCTGGTGCTTTTTTCGGCGCGAAGGGCGACCGTGGTGCGATGCTAGGCAACGAACCTTTCGCTAACCTTTCAGCG‑TGAAAGGTTTGTCACGAGGGGCTTCACAGGCGTGGTGACAGCGGt < 1:1127236/150‑1 (MQ=255) tCCGTTTATTGTTCTTATTCG‑‑TTGCACCTTGCTGGTGCTTTTTTCGGCGCGAAGGGCGACCGTGGTGCGATGCTAGGCAACGAACCTTTCGCTAACCTTTCAGCG‑TGAAAGGTTTGTCACGAGGGGCTTCACAGGCGTGGTGACAGCGGt < 2:1475225/150‑1 (MQ=255) ccGTTTATTGTTCTTATTCG‑‑TTGCACCTTGCTGGTGCTTTTTTCGGCGCGAAGGGCGACCGTGGTGCGATGCTAGGCAACGAACCTTTCGCTAACCTTTCAGCG‑TGAAAGGTTTGTCACGAGGGGCTTCACAGGCGTGGTGACAGCGGTa < 2:13723/150‑1 (MQ=255) tttATTGTTCTTATTCG‑‑TTGCACCTTGCTGGTGCTTTTTTCGGCGCGAAGGGCGACCGTGGTGCGATGCTAGGCAAAGAACCTTGCGCTAACCTTTCAGCG‑TGGAGGGTTTGTCACTGGGGGCTGAACGGTCGAGGGGACAGGGATacac > 1:420455/1‑150 (MQ=255) ttCTTATTCG‑‑TTGCACCTTGCTGGTGCTTTTTTCGGCGCGAAGGGCGACCGTGGTGCGATGCTAGGCAACGAACCTTTCGCTAACCTTTCAGCG‑TGAAAGGTTTGTCACGAGGGGCTTCACAGGCGTGGTGACAGCGGTACACTCCgcgc > 1:1661720/1‑150 (MQ=255) ttCTTATTCG‑‑TTGCACCTTGCTGGTGCTTTTTTCGGCGCGAAGGGCGACCGTGGTGCGATGCTAGGCAACGAACCTTTCGCTAACCTTTCAGCG‑TGAAAGGTTTGTCACGAGGGGCTTCACAGGCGTGGTGACAGCGGTACACTCCgcgc > 2:1345354/1‑150 (MQ=255) ttCTTATTCG‑‑TTGCACCTTGCTGGTGCTTTTTTCGGCGCGAAGGGCGACCGTGGTGCGATGCTAGGCAACGAACCTTTCGCTAACCTTTCA‑CGCTGAAAGGt < 1:1563415/102‑1 (MQ=255) ttCTTATTCG‑‑TTGCACCTTGCTGGTGCTTTTTTCGGCGCGAAGGGCGACCGTGGTGCGATGCTAGGCAACGAACCTTTCGCTAACCTTTCA‑CGCTGAAAGGt > 2:1563415/1‑102 (MQ=255) ttATTCG‑‑TTGCACCTTGCTGGTGCTCTCTTCGGCGCGAATGGCGACACTGCAGCAATGTTAGGCAACGAACCTTTCGCTAACCTTTCAGAG‑TGACAGGTTTGTCACTAGGCGCCTCGCAGGCGTGGTGAAAACGGTACACTCCACGCCag > 2:336734/1‑149 (MQ=255) ttCG‑‑TTGCACCTTGCTGGTGCTTTTTTCGGCGCGAAGGGCGACCGTGGTGCGATGCTAGGCAACGAACCTTTCGCTAACCTTTCAGCG‑TGAAAGGTTTGTCACGAGGGGCTTCACAGGCGTGGTGACAGCGGTACACTCCGCGCCACCGc > 1:2233107/1‑150 (MQ=255) ttCG‑‑TTGCACCTTGCTGGTGCTTTTTTCGGCGCGAAGGGCGACCGTGGTGCGATGCTAGGCAACGAACCTTTCGCTAACCTTTCAGCG‑TGAAAGGTTTGTCACGAGGGGCTTCACAGGCGTGGTGACAGCGGTACACTCCGCGCCACCGc > 2:1117017/1‑150 (MQ=255) cACCTTGCTGGTGCTTTTTTCGGCGCGAAGGGCGACCGTGGTGCGATGCTAGGCAACGAACCTTTCGCTAACCTTTCAGc > 2:1048683/1‑80 (MQ=255) cACCTTGCTGGTGCTTTTTTCGGCGCGAAGGGCGACCGTGGTGCGATGCTAGGCAACGAACCTTTCGCTAACCTTTCAGc < 1:1048683/80‑1 (MQ=255) cACCTTGCTGGTGCTTTTTTCGGCGCGAAGGGCGACCGTGGTGCGATGCTAGGCAACGAACCTTTCGCTAACCTTTCAGCG‑TGAAAGGTTTGTCACGAGGGGCTTCACAGGCGTGGTGACAGCGGTACACTCCGCGCCACCGCCCCAccc > 2:2061800/1‑150 (MQ=255) cTTGCTGGTGCTTTTTTCGGCGCGAAGGGCGACCGTGGTGCGATGCTAGGCAACGAACCTTTCGCTAACCTTTCAGCG‑TGAAAGGTTTGTCACGAgg > 1:471379/1‑97 (MQ=255) cTGGTGCTTTTTTCGGCGCGAAGGGCGACCGTGGTGCGATGCTAGGCAACGAACCTTTCGCTAACCTTTCAGCG‑TGAAAGGTTTGTCACGAGGGGCTTCACAGGCGTGGTGACAGCGGTACACTCCGCGCCACCGCCCCACCCGAGCAgg < 1:577267/150‑1 (MQ=255) ggTGCTTTTTTCGGCGCGAAGGGCGACCGTGGTGCGATGCTAGGCAAGGAACCTTTCGCTAACCTTTCAGCG‑TGAAAGGTTTGTCACGAGGGGCTTCACAGGCGTGGTGACAGCGGTAGACTCCGCGCCACCGCCCCACCCGAGCAGGga < 1:1072327/150‑1 (MQ=255) ggTGCTTTTTTCGGCGCGAAGGGCGACCGTGGTGCGATGCTAGGCAACGAACCTTTCGCTAACCTTTCAGCG‑TGAAAGGTTTGTCACGAGGGGCTTCACAGGCGTGGTGACAGCGGTACACTCCGCGCCACCGCCCCACCCGAGCAGGga < 2:188406/150‑1 (MQ=255) ggTGCTTTTTTCGGCGCGAAGGGCGACCGTGGTGCGATGCTAGGCAACGAACCTTTCGCTAACCTTTCAGCG‑TGAAAGGTTTGTCACGAGGGGCTTCACAGGCGTGGTGACAGCGGTACACTCCGCGCCACCGCCCCACCCGAGCAGGga < 2:2265786/150‑1 (MQ=255) gTGCTTTTTTCGGCGCGAAGGGCGACCGTGGTGCGATGCTAGGCAACGAACCTTTCGCTAACCTTTCAGCG‑TGAAAGGTTTGTCACGAGGGGCTTCACAGGCGTGGTGACAGCGGTACACTCCGCGCCACCGCCCCACCCGAGCAGGgag < 2:1217403/150‑1 (MQ=255) tGCTTTTTTCGGCGCGAAGGGCGACCGTGGTGCGATGCTAGGCAACGAACCTTTCGCTAACCTTTCAGCG‑TGAAAGGttt > 1:2397914/1‑80 (MQ=255) tGCTTTTTTCGGCGCGAAGGGCGACCGTGGTGCGATGCTAGGCAACGAACCTTTCGCTAACCTTTCAGCG‑TGAAAGGttt < 2:2397914/80‑1 (MQ=255) tGCTTTTTTCGGCGCGAAGGGCGACCGTGGTGCGATGCTAGGCAACGAACCTTTCGCTAACCTTTCAGCG‑TGAAAGGTTTGt < 1:1177528/82‑1 (MQ=255) tGCTTTTTTCGGCGCGAAGGGCGACCGTGGTGCGATGCTAGGCAACGAACCTTTCGCTAACCTTTCAGCG‑TGAAAGGTTTGt > 2:1177528/1‑82 (MQ=255) tGCTTTTTTCGGCGCGAAGGGCGACCGTGGTGCGATGCTAGGCAACGAACCTTTCGCTAACCTTTCAGCG‑TGAAAGGTTTGTCACGAGGGGCTTCACAGGCGTGGTGACAGCGGTACACTCCGCGCCACCGCCCCACCCGAGCAGGgaga < 1:1566952/150‑1 (MQ=255) tGCTTTTTTCGGCGCGAAGGGCGACCGTGGTGCGATGCTAGGCAACGAACCTTTCGCTAACCTTTCAGCG‑TGAAAGGTTTGTCACGAGGGGCTTCACAGGCGTGGTGACAGCGGTACACTCCGCGCCACCGCCCCACCCGAGCAGGgaga > 1:1504400/1‑150 (MQ=255) cTTTTTTCGGCGCGAAGGGCGACCGTGGTGCGATGCTAGGCAACGAACCTTTCGCTAACCTTTCAGCG‑TGAAAGGTTTGTCACGAGGGGCTTCACAGGCGTGGTGACAGCGGTACACt > 2:1287333/1‑118 (MQ=255) cTTTTTTCGGCGCGAAGGGCGACCGTGGTGCGATGCTAGGCAACGAACCTTTCGCTAACCTTTCAGCG‑TGAAAGGTTTGTCACGAGGGGCTTCACAGGCGTGGTGACAGCGGTACACt < 1:1287333/118‑1 (MQ=255) ttttttCGGCGCGAAGGGCGACCGTGGTGCGATGCTAGGCAACGAACCTTTCGCTAACCTTTCAGCG‑TGaaa < 1:906699/72‑1 (MQ=255) ttttttCGGCGCGAAGGGCGACCGTGGTGCGATGCTAGGCAACGAACCTTTCGCTAACCTTTCAGCG‑TGaaa > 2:906699/1‑72 (MQ=255) ttttttCGGCGCGAAGGGCGACCGTGGTGCGATGCTAGGCAACGAACCTTTCGCTAACCTTTCAGCG‑TGAAAGGTTTGTCACGAGGGGCTTCACAGGCGTGGTGACAGCGGTACACTCCGCGCCACCGCCCCACCCGAGCAGGGAGAATc > 2:17284/1‑150 (MQ=255) ttttttCGGCGCGAAGGGCGACCGTGGTGCGATGCTAGGCAACGAACCTTTCGCTAACCTTTCAGCG‑TGAAAGGTTTGTCACGAGGGGCTTCACAGGCGTGGTGACAGCGGTACACTCCGCGCCACCGCCCCACCCGAGCAGGGAGAATc > 1:1169348/1‑150 (MQ=255) tttttCGGCGCGAAGGGCGACCGTGGTGCGATGCTAGGCAACGAACCTTTCGCTAACCTTTCAGCG‑TGAAAGGTGTGGCACGAGGGGCTTCAACAGCGTGGTGATAGCGGTACACTCCGCGCCACCGCCCCACCCGAGCAGGGAGAATcc > 1:1142382/1‑150 (MQ=255) ttttCGGCGCGAAGGGCGACCGTGGTGCGATGCTAGGCAACGAACCTTTCGCTAACCTTTCAGCG‑TGAAAGGTTTGTc > 1:979240/1‑78 (MQ=255) tttCGGCGCGAAGGGCGACCGTGGTGCGATGCTAGGCAACGAACCTTTCGCTAACCTTTCAGCG‑TGAAAGGTTTGTCACGAGGGGCTTCACAGGCGTGGTGACAGCGGTACACTCCGCGCCACCGCCCCACCCGAGCAGGGAGAATCCGa < 2:509988/150‑1 (MQ=255) tttCGGCGCGAAGGGCGACCGTGGTGCGATGCTAGGCAACGAACCTTTCGCTAACCTTTCAGCG‑TGAAAGGTTTGTCACGAGGGGCTTCACAGGCGTGGTGACAGCGGTACACTCCGCGCCACCGCCCCACCCGAGCAGGGAGAATCCGa < 2:610150/150‑1 (MQ=255) tttCGGCGCGAAGGGCGACCGTGGTGCGATGCTAGGCAACGAACCTTTCGCTAACCTTTCAGCG‑TGAAAGGTTTGTCACGAGGGGCTTCACAGGCGTGGTGACAGCGGTACACTCCGCGCCACCGCCCCACCCGAGCAGGGAGAATCCGa < 1:2322451/150‑1 (MQ=255) gcgAAGGGCGACCGTGGTGCGATGCTAGGCAACGAACCTTTCGCTAACCTTTCAGCG‑TGAAAGGTTTGTCACGAGGGGCTTCACAGGCGTGGTGACAGCGGTACGCTCCGCGCCACCGCCCCACCCGAGCAGGGAGAATCCGATGCgtgt > 2:2076700/1‑150 (MQ=255) gAAGGGCGACCGTGGTGCGATGCTAGGCAACGAACCTTTCGCTAACCTTTCAGCG‑TGAAAGGTTTg < 2:2362446/66‑1 (MQ=255) gAAGGGCGACCGTGGTGCGATGCTAGGCAACGAACCTTTCGCTAACCTTTCAGCG‑TGAAAGGTTTGTCACGAGGGGCTTCACAGGCGTGGTGACAGCGGTACACTCCGCGCCACCGCCCCACCCGAGCAGGGAGAATCCGATGCGTGTGc > 1:1704122/1‑150 (MQ=255) gAAGGGCGACCGTGGTGCGATGCTAGGCAACGAACCTTTCGCTAACCTTTCAGCG‑TGAAAGGTTTGTCACGAGGGGCTTCACAGGCGTGGTGACAGCGGTACACTCCGCGCCACCGCCCCACCCGAGCAGGGAGAATCCGATGCGTGTGc > 1:1483783/1‑150 (MQ=255) gAAGGGCGACCGTGGTGCGATGCTAGGCAACGAACCTTTCGCTAACCTTTCA‑CGCTGAAAGGttag > 1:1707393/1‑64 (MQ=37) gAAGGGCGACCGTGGTGCGATGCTAGGCAACGAACCTTTCGCTAACCTTTCA‑CGCTGAAAGGttag < 2:1707393/66‑3 (MQ=37) cGACCGTGGTGCGATGCTAGGCAACGAACCTTTCGCTAACCTTTCAGCG‑TGAAAGGTTTGTCACGAGGGGCTTCACAGGCGTGGTGACAGCGGTACACTCCGCGCCACCGCCCCACCCGAGCAGGGAGAATCCGATGCGTGTGCTACTgg < 1:1117017/150‑1 (MQ=255) gACCGTGGTGCGATGCTAGGCAACGAACCTTTCGCTAACCTTTCAGCG‑TGAAAGGTTTGTCACGAGGGGCTTCACAGGCGTGGTGACAGCGGTACACTCCGCGCCACCGCCCCACCCGAGCAgg > 1:2385399/1‑124 (MQ=255) gACCGTGGTGCGATGCTAGGCAACGAACCTTTCGCTAACCTTTCAGCG‑TGAAAGGTTTGTCACGAGGGGCTTCAAACGTGTGGTGACAGCGGTCAACTCCTTGCCACCGCCCCACCCGAGCAGGGAGAATCCGATGCGTGTGCTACTGGt > 2:573203/1‑150 (MQ=255) cGTGGTGCGATGCTAGGCAACGAACCTTTCGCTAACCTTTCAGCG‑TGAAAGGTTTGTCACGAGGGGCTTCACAGGCgtg > 1:725879/1‑79 (MQ=255) gtggtgCGATGCTATGGTACGGACCGTTCGCTAACCTTTCAGCG‑TGAAAGGTTTGTCACGAGCAGGAAGCCATGCGTGGTGACAGCGGTACACTCCGCGCCACCGCCCCACCCGAGCAGGGAGAATCCGATGCGTGTGCTACTGGTCGaa < 1:150198/150‑1 (MQ=255) gtggtgCGATGCTAGGCAACGAACCTTTCGCTAACCTTTCAGCG‑TGAAAGGTTTGTCACGAGGGGCTTCACAGGCGTGGTGACAGCGGTACACTCCGCGCCACCGCCCCACCCGAGCAGGGAGAATCCGATGCGTGTGCTACTGGTCGaa < 1:1311572/150‑1 (MQ=255) gtggtgCGATGCTAGGCAACGAACCTTTCGCTAACCTTTCAGCG‑TGAAAGGTTTGTCACGAGGGGCTTCACAGGCGTGGTGACAGCGGTACACTCCGCGCCACCGCCCCACCCGAGCAGGGAGAATCCGATGCGTGTGCTACTGGTCGaa < 2:420455/150‑1 (MQ=255) gCGATGCTAGGCAACGAACCTTTCGCTAACCTTTCAGAG‑TGAAAGGTTTGTCAAGAGGGGCTTCACAGGCGTGGTGACAGCGGTACACTCCGCGCCACCGCCCCACCCGAGCAGGGAGAATCCGATGCGTGTGCTACTGGTCGAAGacca > 2:277696/1‑150 (MQ=255) cGATGCTAGGCAACGAACCTTTCGCTAACCTTTCAGCG‑TGAAAGGTTTGTCACGAGGGGCTTCACAGGCGTGGTGACAGCGGTACACTCCGCGCCACCGCCCCACCCGAGCAGGGAGAATCCGATGCGTGTGCTACTGGTCGAAGaccac < 1:117587/150‑1 (MQ=255) aGGCAACGAACCTTTCGCTAACCTTTCAGCG‑TGAAAGGTTTGTCACGAGGGGCTTCACAGGCGTGGTGACAGCGGTACACTCCGCGCCACCGCCCCACCCGAGCAGGGAGAATCCGATGCGTGTGCTACTGGTCGAAGACCACCTGCAAc < 1:1155205/150‑1 (MQ=255) aGGCAACGAACCTTTCGCTAACCTTTCAGCG‑TGAAAGGTTTGTCACGAGGGGCTTCACAGGCGTGGTGACAGCGGTACACTCCGCGCCACCGCCCCACCCGAGCAGGGAGAATCCGATGCGTGTGCTACTGGTCGAAGACCACCTGCAAc > 2:1894266/1‑150 (MQ=255) ggCAACGAACCTTTCGCTAACCTTTCAGCG‑TGAAAGGTTTGTCACGAGGGGCTTCACAGGCGTGGTGACAGCGGTACACTCCGCGCCACCGCCCCACCCGAGCAGGGAGAATCCGATGCGTGTGCTACTGGt > 1:1299782/1‑132 (MQ=255) ggCAACGAACCTTTCGCTAACCTTTCAGCG‑TGAAAGGTTTGTCACGAGGGGCTTCACAGGCGTGGTGACAGCGGTACACTCCGCGCCACCGCCCCACCCGAGCAGGGAGAATCCGATGCGTGTGCTACTGGt < 2:1299782/132‑1 (MQ=255) gCAACGAACCTTTCGCTAACCTTTCAGCG‑TGAAAGGTTTGTCACGAGGGGCTTCACAGGCGTGGTGACAGCGGTACACTCCGCGCCACCGCCCCACCCGAGCAGGGAGAATCCGATGCGTGTGCTACTGGTCGAAGACCACCTGCAACTg > 2:451856/1‑150 (MQ=255) gCAACGAACCTTTCGCTAACCTTTCAGCG‑TGAAAGGTTTGTCACGAGGGGCTTCACAGGCGTGGTGACAGCGGTACACTCCGCGCCACCGCCCCACCCGAGCAGGGAGAATCCGATGCGTGTGCTACTGGTCGAAGACCACCTGCAACTg > 1:1274213/1‑150 (MQ=255) cAACGAACCTTTCGCTAACCTTTCAGCG‑TGAAAGGTTTGTCACGAGGGGCTTCACAGGCGTGGTGACa > 2:1593715/1‑68 (MQ=255) aaCGAACCTTTCGCTAACCTTTCAGCG‑TGAAAGGTTTGTCACGAGGGGCTTCACAGGCGTGGTGACAGCGGTACACTCCGCGCCACCGCCCCACCCGAGCAGGGAGAATCCGATGCGTGTGCTACTGGTCGAAGa > 2:702983/1‑135 (MQ=255) aaCGAACCTTTCGCTAACCTTTCAGCG‑TGAAAGGTTTGTCACGAGGGGCTTCACAGGCGTGGTGACAGCGGTACACTCCGCGCCACCGCCCCACCCGAGCAGGGAGAATCCGATGCGTGTGCTACTGGTCGAAGa < 1:702983/135‑1 (MQ=255) aCGAACCTTTCGCTAACCTTTCAGCG‑TGAAAGGTTTGTCACGAGGGGCTTCACAGGCGTGGTGACAGCGGTACACTCCGCGCCACCGCCCCACACGAGCAGGGAGAATCCGATGCGTGTGCTACTGGTCGAAGACCACCTGCAACTGGcc > 2:693295/1‑150 (MQ=255) aCCTTTCGCTAACCTTTCAGCG‑TGAAAGGTTTGTCACGAGGGGCTTCACAGGCGTGGTGACAGCGGTACACTCCGCGCCACCGCCCCACCCGAGCAGGGAGAATCCGATGCGTGTGCTACTGGTCGAAGACCACCTGCAACTGGCCGaaa > 1:936775/1‑150 (MQ=255) tttCGCTAACCTTTCAGCG‑TGAAAGGTTTGTCACGAGGGGCTTCACAGGCGTGGTGACAGCGGTACACTCCGCGCCACCGCCCCACCCGAGCAGGGAGAATCCGATGCGTGTGCTACTGGTCGAAGACCACCTGCAACTGGCCGAAAGCg > 1:536382/1‑150 (MQ=255) gCTAACCTTTCAGCG‑TGAAAGGTTTGTCACGAGGGGCTTCACAGGCGTGGTGACAGCGGTACACTCCGCGCCACCGCCCCACCCGAGCAGGGAGAATCCGATGCGTGTGCTACTGGTCGAAGACCACCTGCAACTGGcc < 1:1651115/139‑1 (MQ=255) gCTAACCTTTCAGCG‑TGAAAGGTTTGTCACGAGGGGCTTCACAGGCGTGGTGACAGCGGTACACTCCGCGCCACCGCCCCACCCGAGCAGGGAGAATCCGATGCGTGTACTACTGGTCGAAGACCACCTGCAACTGGcc > 2:1651115/1‑139 (MQ=255) caaaCCTTTCA‑CGCTGAAAGGTTTGTCACGAGGGGCTTCACAGGCGTGGTGACAGCGGTACACTCCGCGCCACCGCCCCACCCGAGCAGGGAGAATCCGATGCGTGTGCTACTg > 2:2059394/3‑114 (MQ=255) caaaCCTTTCA‑CGCTGAAAGGTTTGTCACGAGGGGCTTCACAGGCGTGGTGACAGCGGTACACTCCGCGCCACCGCCCCACCCGAGCAGGGAGAATCCGATGCGTGTGCTACTg < 1:2059394/112‑1 (MQ=255) cTAACCTTTCAGCG‑TGAAAGGTTTGTCACGAGGGGCTTCACAGGCGTGGTGACAGCGGTACACTCCGCGCCACCGCCCCACCCGAGCAgg > 1:1839808/1‑90 (MQ=255) tAACCTTTCAGCG‑TGAAAGGTTTGTCACGAGGGGCTTCACAGGCGTGGTGACAGCGGTACACTCCGCGCCACCGCCCCACCCGAGCAGGGAGAATCCGATGCGTGTGCTACTGGTCGAAGACCACCTGCAACTGGCCGAAAGCGTGGccc > 1:924875/1‑150 (MQ=255) aaCCTTTCAGCG‑TGAAAGGTTTGTCACGAGGGGCTTCACAGGCGTGGTGACAGCGGTACACTCCGCGCCACCGCCCCACCCGAGCAGGGAGAATCCGATGCGTGTGCTACTGGTc > 1:1368548/1‑115 (MQ=255) aaCCTTTCAGCG‑TGAAAGGTTTGTCACGAGGGGCTTCACAGGCGTGGTGACAGCGGTACACTCCGCGCCACCGCCCCACCCGAGCAGGGAGAATCCGATGCGTGTGCTACTGGTc < 2:1368548/115‑1 (MQ=255) cTTTCAGCG‑TGAAAGGTTTGTCACGAGGGGCTTCACAGGCGTGGTGACAGCGGTACACTCCGCGCCACCGCCCCACCCGAGCAGGGAGAATCCGATGCGTGTGCTACTGGTCGAAGACCACCTGCAACTGGCCGAAAGCGTGGCCCTGGc < 1:17284/150‑1 (MQ=255) cTTTCAGCG‑TGAAAGGTTTGTCACGAGGGGCTTCACAGGCGTGGTGACAGCGGTACACTCCGCGCCACCGCCCCACCCGAGCAGGGAGAATCCGATGCGTGTGCTACTGGTCGAAGACCACCTGCAACTGGCCGAAAGCGTGGCCCTGGc > 2:1452015/1‑150 (MQ=255) cTTTCAGCG‑TGAAAGGTTTGTCACGAGGGGCTTCACAGGCGTGGTGACAGCGGTACACTCCGCGCCACCGCCCCACCCGAGCAGGGAGAATCCGATGCGTGTGCTACTGGTCGAAGACCACCTGCAACTGGCCGAAAGCGTGGCCCTGGc > 1:1877712/1‑150 (MQ=255) cTTTCAGCG‑TGAAAGGTTTGTCACGAGGGGCTTCACAGGCGTGGTGACAGCGGTACACTCCGCGCCACCGCCCCACCCGAGCAGGGAGAATCCGATGCGTGTGCTACTGGTCGAAGACCACCTGCAACTGGCCGAAAGCGTGGCCCTGGc < 2:924875/150‑1 (MQ=255) tttCAGCG‑TGAAAGGTTTGTCACGAGGGGCTTCACAGGCGTGGTGACAGCGGTACACTCCGCGCCACCGCCCCACCCGAGCAGGGAGAATCCGATGCGTGTGc < 1:897860/103‑1 (MQ=255) tttCAGCG‑TGAAAGGTTTGTCACGAGGGGCTTCACAGGCGTGGTGACAGCGGTACACTCCGCGCCACCGCCCCACCCGAGCAGGGAGAATCCGATGCGTGTGc > 2:897860/1‑103 (MQ=255) tttCAGCG‑TGAAAGGTTTGTCACGAGGGGCTTCACAGGCGTGGTGACAGCGGTACACTCCGCGCCACCGCCCCACCCGAGCAGGGAGAATCCGATGCGTGTGCTACTGGTCGAAGACCACCTGCAACTGGCCGAAAGCGTGGCCCt > 1:970689/1‑146 (MQ=255) tttCAGCG‑TGAAAGGTTTGTCACGAGGGGCTTCACAGGCGTGGTGACAGCGGTACACTCCGCGCCACCGCCCCACCCGAGCAGGGAGAATCCGATGCGTGTGCTACTGGTCGAAGACCACCTGCAACTGGCCGAAAGCGTGGCCCt < 2:970689/146‑1 (MQ=255) tttCAGCG‑TGAAAGGTTTGTCACGAGGGGCTTCACAGGCGTGGTGACAGCGGTACACTCCGCGCCACCGCCCCACCCGAGCAGGGAGAATCCGATGCGTGTGCTACTGGTCGAAGACCACCTGCAACTGGCCGAAAGCGTGGCCCTGGcc > 1:7508/1‑150 (MQ=255) | TAGGCGCGAACGCCTGCGGCTGCGATGACAGCATCGTCGATGACTCCGTTTATTGTTCTTATTCG‑‑TTGCACCTTGCTGGTGCTTTTTTCGGCGCGAAGGGCGACCGTGGTGCGATGCTAGGCAACGAACCTTTCGCTAACCTTTCAGCG‑TGAAAGGTTTGTCACGAGGGGCTTCACAGGCGTGGTGACAGCGGTACACTCCGCGCCACCGCCCCACCCGAGCAGGGAGAATCCGATGCGTGTGCTACTGGTCGAAGACCACCTGCAACTGGCCGAAAGCGTGGCCCTGGCC > NC_002947/1620243‑1620533 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |