| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 199,690 | Δ1 bp | 5.8% | coding (5196/26049 nt) | PP_0168 → | putative surface adhesion protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 199,690 | 0 | C | . | 5.8% | 300.7 / 13.6 | 104 | coding (5196/26049 nt) | PP_0168 | putative surface adhesion protein |
| Reads supporting (aligned to +/- strand): ref base C (48/49); new base . (4/2); total (52/52) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.78e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.83e-01 | |||||||||||
Only 100 of 104 total aligned reads displayed.
AGATCAGCTTGGGCATCAACTCGGCGGTGGACGCCACTGGTGCTGCATTCGAGAACCTTGAGCTGGGCGGTGCTGCTTCGGTTCAAGTCACCGACACCCT‑CGACGAAGTGGTGGCCAAGCTGACTGCCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGACGGCACCACTGTCGTCGTGGCAGCCAACAGCACCACGGGCTCGGCGACTGCAACCGCACCAG > NC_002947/199542‑199838 | aGATCAGCTTGGGCATCAACTCGGCGGTGGACGCCACTGGTGCTGCATTCGAGAACCTTGAGCTGGGCGGTGCTGCTTCGGTTCAAGTCACCGACACCCT‑CGACGAAGTGGTGGCCAAGCTGACTGCCACCCCTTCGGTGACCGAAGGCg < 1:1441805/150‑1 (MQ=255)aGATCAGCTTGGGCATCAACTCGGCGGTGGACGCCACTGGTGCTGCATTCGAGAACCTTGAGCTGGGCGGTGCTGCTTCGGTTCAAGTCACCGACACCCT‑CGACGAAGTGGTGGCCAAGCTGACTGCCACCCCTTCGGTGACCGAAGGCg < 1:1769225/150‑1 (MQ=255)aGATCAGCTTGGGCATCAACTCGGCGGTGGACGCCACTGGTGCTGCATTCGAGAACCTTGAGCTGGGCGGTGCTGCTTCGGTTCAAGTCACCGACACCCT‑CGACGAAGTGGTGGCCAAGCTGACTGCCACCCCTTCGGTGACCGAAGGCg < 2:2269828/150‑1 (MQ=255) aTCAGCTTGGGCATCAACTCGGCGGTGGACGCCACTGGTGCTGCATTCGAGAACCTTGAGCTGGGCGGTGCTGCTTCGGTTCAAGTCACCGACACCCT‑CGACGAAGTGGTGGCCAAGCTGACTGCCACCCCTTCGGTGACCGAAGGCGGt < 2:42913/150‑1 (MQ=255) cAGCTTGGGCATCAACTCGGCGGTGGACGCCACTGGTGCTGCATTCGAGAACCTTGAGCTGGGCGGTGCTGCTTCGGTTCAAGTCACCGACACCCT‑CGACGAAGTGGTGGCCAAGCTGACTGCCACCCCTTCGGTGACCGAAGGCGGTga < 1:1564474/150‑1 (MQ=255) gCTTGGGCATCACCTCGGCGGTGGACGCCACTGGTGCTGCATTCGAGAACCTTGAGCTGGGCGGTGCTGCTTCGGTTCAAGTCACCGACACCCT‑CGACGAAGTGGTGGCCAAGCTGACTGCCAACCCTTCGGTGACCGAAGGCGGTgaga < 1:1529639/150‑1 (MQ=255) gCTTGGGCATCAACTCGGCGGTGGACGCCACTGGTGCTGCATTCGAGAACCTTGAGCTGGGCGGTGCTGCTTCGGTTCAAGTCACCGACACCATGCGCCGCTGTTG‑GGCCAAGCTGACTGCCACCCCTTCGGTGACCGAAGGCGGTgaga > 2:1871263/1‑150 (MQ=17) ttGGGCATCAACTCGGCGGTGGACGCCACTGGTGCTGCATTCGAGAACCTTGAGCTGGGCGGTGCTGCTTCGGTTCAAGTCACCGACACCCT‑CGACGAAGTGGTGGCCAAGCTGACTGCCACCCCTTCGGTGACCGAAGGCGGt > 1:1195560/1‑144 (MQ=255) ttGGGCATCAACTCGGCGGTGGACGCCACTGGTGCTGCATTCGAGAACCTTGAGCTGGGCGGTGCTGCTTCGGTTCAAGTCACCGACACCCT‑CGACGAAGTGGTGGCCAAGCTGACTGCCACCCCTTCGGTGACCGAAGGCGGt < 2:1195560/144‑1 (MQ=255) gggCATCAACTCGGCGGTGGACGCCACTGGTGCTGCATTCGAGAACCTTGAGCTGGGCGGTGCTGCTTCGGTTCAAGTCACCGACACCCT‑CGACGAAGTGGTGGCCAAGCTGACTGCCACCCCTTCGGTGACCGAAGGCGGTGAGATCAc < 1:1686144/150‑1 (MQ=255) gCATCAACTCGGCGGTGGACGCCACTGGTGCTGCATTCGAGAACCTTGAGCTGGGCGGTGCTGCTTCGGTTCAAGTCACCGACACCCT‑CGACGAAGTGGTGGCCAAGCTGACTGCCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCt > 1:600790/1‑150 (MQ=255) cATCAACTCGGCGGTGGACGCCACTGGTGCTGCATTCGAGAACCTTGAGCTGGGCGGTGCTGCTTCGGTTCAAGTCACCGACACCCT‑CGACGAAGTGGTGGCCAAGCTGACTGCCACCCCTTCGCTGACCGAAGGCGGTGAGACCACCTa > 2:494790/1‑150 (MQ=255) aTCAACTCGGCGGTGGACGCCACTGGTGCTGCATTCGAGAACCTTGAGCTGGGCGGTGCTGCTTCGGTTCAAGTCACCGACACCCT‑CGACGAAGTGGTGGCCAAGCTGACTGCCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTac > 1:2051532/1‑150 (MQ=255) tCAACTCGGCGGTGGACGCCACTGGTGCTGCATTCGAGAACCTTGAGCTGGGCGGTGCTGCTTCGGTTCAAGTCACCGACACCCT‑CGACGAAGTGGTGGCCAAGCTGACTGCCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTaca < 1:949114/150‑1 (MQ=255) tCAACTCGGCGGTGGACGCCACTGGTGCTGCATCCGAGAACCTTGAGCTGGGCGGTGCTGCTTCGGTTCAAGTCACCGACACCCT‑CGACGAAGTGGTGGCCAAGCTGACTGCCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTaca > 2:35545/1‑150 (MQ=255) aaCTCGGCGGTGGACGCCACTGGTGCTGCATTCGAGAACCTTGAGCTGGGCGGTGCTGCTTCGGTTCAAGTCACCGACACCCT‑CGACGAAGTGGTGGCCAAGCTGACTGCCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACAcc < 2:1030670/150‑1 (MQ=255) tCGGCGGTGGACGCCACTGGTGCTGCATTCGAGAACCTTGAGCTGGGCGGTGCTGCTTCGGTTCAAGTCACCGACACCCT‑CGACGAAGTGGTGGCCAAGCTGACTGCCACCCCTTCGGTGGCGGGAGGCGGTGAGATCACCTACACCATc < 1:1871263/150‑1 (MQ=255) tCGGCGGTGGACGCCACTGGTGCTGCATTCGAGAACCTTGAGCTGGGCGGTGCTGCTTCGGTTCAAGTCACCGACACCCT‑CGACGAAGTGGTGGCCAAGCTGACTGCCACCCCTTCGGTGACCGAAGGCGGTGAGATCAc < 2:1905848/140‑1 (MQ=255) tCGGCGGTGGACGCCACTGGTGCTGCATTCGAGAACCTTGAGCTGGGCGGTGCTGCTTCGGTTCAAGTCACCGACACCCT‑CGACGAAGTGGTGGCCAAGCTGACTGCCACCCCTTCGGTGACCGAAGGCGGTGAGATCAc > 1:1905848/1‑140 (MQ=255) tCGGCGGTGGACGCCACTGGTGCTGCATTCGAGAACCTTGAGCTGGGCGGTGCTGCTTCGGTTCAAGTCACCGACACCCT‑CGACGAAGTGGTGGCCAAGCTGACTGCCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATc > 2:2125157/1‑150 (MQ=255) gcggTGGACGCCACTGGTGCTGCATTCGAGAACCTTGAGCTGGGCGGTGCTGCTTCGGTTCAAGTCACCGACACCCT‑CGACGAAGTGGTGGCCAAGCTGACTGCCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCAcc < 1:767862/150‑1 (MQ=255) ggTGGACGCCACTGGTGCTGCATTCGAGAACCTTGAGCTGGGCGGTGCTGCTTCGGTTCAAGTCACCGACACCCT‑CGACGAAGTGGTGGCCAAGCTGACTGCCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCt < 2:575003/150‑1 (MQ=40) gACGCCACTGGTGCTGCATTCGAGAACCTTGAGCTGGGCGGTGCTGCTTCGGTTCAAGTCACCGACACCCT‑CGACGAAGTGGTGGCCAAGCTGACTGCCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGAcc > 2:1378667/1‑150 (MQ=39) gACGCCACTGGTGCTGCATTCGAGAACCTTGAGCTGGGCGGTGCTGCTTCGGTTCAAGTCACCGACACCCT‑CGACGAAGTGGTGGCCAAGCTGACTGCCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGAcc > 2:178504/1‑150 (MQ=39) gCCACTGGTGCTGCATTCGAGAACCTTGAGCTGGGCGGTGCTGCTTCGGTTCAAGTCACCGACACCCT‑CGACGAAGTGGTGGCCAAGCTGACTGCCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACcaac > 2:1182030/1‑150 (MQ=38) ggTGCTGCATTCGAGAACCTTGAGCTGGGCGGTGCTGCTTCGGTTCAAGTCACCGACACCCT‑CGACGAAGTGGTGGCCAAGCTGACTGCCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGAc < 2:600790/150‑1 (MQ=39) ggTGCTGCATTCGAGAACCTTGAGCTGGGCGGTGCTGCTTCGGTTCAAGTCACCGACACCCT‑CGACGAAGTGGTGGCCAAGCTGACTGCCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGAc < 1:1378667/150‑1 (MQ=39) tgctgcATTCGAGAACCTTGAGCTGGGCGGTGCTGCTTCGGTTCAAGTCACCGACACCCT‑CGACGAAGTGGTGGCCAAGCTGACTGCCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACgg > 1:2088779/1‑150 (MQ=38) ctgcATTCGAGAACCTTGAGCTGGGCGGTGCTGCTTCGGTTCAAGTCNCCGACACCCT‑CGACGAAGTGGTGGCCAAGCTCACTGCCACCCCGTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTc > 1:327578/1‑150 (MQ=255) ctgcATTCGAGAACCTTGAGCTGGGCGGTGCTGCTTCGGTTCAAGTCACCGACACCCT‑CGACGAAGTGGTGGCCAAGCTGACTGCCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCCTCAc < 2:604102/130‑1 (MQ=255) ctgcATTCGAGAACCTTGAGCTGGGCGGTGCTGCTTCGGTTCAAGTCACCGACACCCT‑CGACGAAGTGGTGGCCAAGCTGACTGCCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCAc > 1:604102/1‑130 (MQ=40) tgcATTCGAGAACCTTGAGCTGGGCGGTGCTGCTTCGGTTCAAGTCACCGACACCCT‑CGACGAAGTGGTGGCCAAGCTGACTGCCACCCCTTCGGTGACCGAAGGCGGt > 1:1858781/1‑109 (MQ=255) tgcATTCGAGAACCTTGAGCTGGGCGGTGCTGCTTCGGTTCAAGTCACCGACACCCT‑CGACGAAGTGGTGGCCAAGCTGACTGCCACCCCTTCGGTGACCGAAGGCGGt < 2:1858781/109‑1 (MQ=255) cATTCGAGAACCTTGAGCTGGGCGGTGCTGCTTCGGTTCAAGTCACCGACACCCT‑CGACGAAGTGGTGGCCAAGCTGACTGCCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGc < 1:1396812/150‑1 (MQ=38) aTTCGAGAACCTTGAGCTGGGCGGTGCTGCTTCGGTTCAAGTCACCGACACCCT‑CGACGAAGTGGTGGCCAAGCTGACTGCCACCCCTTCGGTGACCGAAGGCGGTGCGCTCTCCTACACCATCACCCTGACCAACAAAGACGGTCTGcc > 1:1231121/1‑150 (MQ=255) tCGAGAACCTTGAGATGGGAGGTGATGATTCAGTACTAGTCATCGACACCCT‑CGACGAAGTGGTGGCCAAGCTGACTGCCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCATCAAAGACGGTCTGCCGa < 2:1231121/150‑1 (MQ=11) cGAGAACCTTGAGCTGGGCGGTGCTGCTTCGGTTAAAGTCACCGACACCCT‑CGACGAAGTGGTGGCCAAGCTGACTGCCACCCCTTCGGTGACCGAAGGAGGTGAGATCACCTACACCATCACCCTGCCCAACAAAGATTGTCTGCCGAt < 2:92644/150‑1 (MQ=11) gagaACCTTGAGCTGGGCGGTGCTGCTTCGGTTCAAGTCACCGACACCCT‑CGACGAAGTGGTGGCCAAGCTGACTGCCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATc > 2:607921/1‑150 (MQ=34) ccTTGAGCTGGGCGGTGCTGCTTCGGTTCAAGTCACCGACACCCT‑CGACGAAGTGGTGGCCAAGCTGACTGACACCCCTTCGGTGACCGAAGGCGGt < 1:2349595/97‑1 (MQ=255) ccTTGAGCTGGGCGGTGCTGCTTCGGTTCAAGTCACCGACACCCT‑CGACGAAGTGGTGGCCAAGCTGACTGACACCCCTTCGGTGACCGAAGGCGGt > 2:2349595/1‑97 (MQ=255) cTTGAGCTGGGCGGTGCTGCTTCGGTTCAAGTCACCGACACCCT‑CGACGAAGTGGTGGCCAAGCTGACTGCCACCCCTTCGGTGACCGAAGGCGGt > 1:1969583/1‑96 (MQ=39) cTTGAGCTGGGCGGTGCTGCTTCGGTTCAAGTCACCGACACCCT‑CGACGAAGTGGTGGCCAAGCTGACTGCCACCCCTTCGGTGACCGAAGGCGGt < 2:1969583/96‑1 (MQ=39) cTTGAGCTGGGCGGTGCTGCTTCGGTTCAAGTCACCGACACCCT‑CGACGAAGTGGTGGCCAAGCTGACTGCCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCAcc > 2:1073200/1‑117 (MQ=38) cTTGAGCTGGGCGGTGCTGCTTCGGTTCAAGTCACCGACACCCT‑CGACGAAGTGGTGGCCAAGCTGACTGCCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCAcc < 1:1073200/117‑1 (MQ=38) cTGGGCGGTGCTGCTTCGGTTCAAGTCACCGACACCCT‑CGACGAAGTGGTGGCCAAGCTGACTGCCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCg < 1:1182030/150‑1 (MQ=39) tGGGCGGTGCTGCTTCGGTTCAAGTCAGCGACACCCT‑CGACGAAGTGGTGGCCAAGCTGACTGCCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCCATAACCACTCgg > 1:452297/1‑150 (MQ=255) tGGGCGGTGCTGCTTCGGTTCAAGTCACCGACACCCT‑CGACGAAGTGGTGGCCAAGCTGACTGCCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCTCCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCgg < 1:987728/150‑1 (MQ=38) tGGGCGGTGCTGCTTCGGTTCAAGTCACCGACACCCT‑CGACGAAGTGGTGGCCAAGCTGACTGCCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCgg > 1:1154151/1‑150 (MQ=38) gCGGTGCTGCTTCGGTTCAAGTCACCGACACCCT‑CGACGAAGTGGTGGCCAAGCTGACTGCCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGc < 1:1802052/150‑1 (MQ=37) ctTCGGTTCAAGTCACCGACACCCT‑CGACGAAGTGGTGGCCAAGCTGACTGCCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCa > 1:2067311/1‑150 (MQ=32) ttCGGTTCAAGTCACCGACACCCT‑CGACGAAGTGGTGGCCAAGCTGACTGCCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCaa < 1:1350554/150‑1 (MQ=32) ttCGGTTCAAGTCACCGACACCCT‑CGACGAAGTGGTGGCCAAGCTGACTCCCACCCCTCCGGTGACCGAAGGCGGTCAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGCCCACTCACCCCCCGCAGCTGTCCTTCaa > 2:138465/1‑150 (MQ=11) tCGGTTCAAGTCACCGACACCCT‑CGACGAAGTGGTGGCCAAGCTGACTGCCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAg < 1:138465/150‑1 (MQ=32) gTTCAAGTCACCGACACCCT‑CGACGAAGTGGTGGCCAAGCTGACTGCCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCAACCTGACCAACAAAGACGGTCTGCCGAACAATAACCACTCGGAGCTGTACTTCAAGCTg > 1:769738/1‑150 (MQ=17) gTTCAAGTCACCGACACCCT‑CGACGAAGTGGTGGCCAAGCTGACTGCCACCCCTTCGGAGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTg > 2:692519/1‑150 (MQ=17) ttCAAGTCACCGACACCCT‑CGACGAAGTGGTGGCCAAGCTGACTGCCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGt > 1:1707859/1‑138 (MQ=33) ttCAAGTCACCGACACCCT‑CGACGAAGTGGTGGCCAAGCTGACTGCCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGt < 2:1707859/138‑1 (MQ=33) tCACCGACACCCT‑CGACGAAGTGGTGGCCAAGCTGACTGCCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAAt > 1:1736249/1‑116 (MQ=11) tCACCGACACCCT‑CGACGAAGTGGTGGCCAAGCTGACTGCCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAAt < 2:1736249/116‑1 (MQ=11) aCCGACACCCT‑CGACGAAGTTGTGGCCAAGCTGACTGCCACCCCTTCGGTGACCGAAGGCGGTGACCCTACCCACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGACGGc < 2:1399006/150‑1 (MQ=11) ccGACACCCT‑CGACGCAGTGGTGGCCAAGCTGACTGCCACCCCTTCGTTGACCGAAGGCGGTGAGATCCCCTACACCATCACCCTGCCCAACAAAGACGGTCTGCCGATCAATAACCACTCGCCGCTGTACTTCAAGCTGACCGACGGca > 1:794557/1‑150 (MQ=11) acacCCT‑CGACGAAGTGGTGGCCAAGCTGACTGCCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGACGGcacca < 2:2067311/150‑1 (MQ=32) cacCCT‑CGACGAAGTGGTGGCCAAGCTGACTGCCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGACGGcaccac < 1:607921/150‑1 (MQ=32) acCCT‑CGACGAAGTGGTGGCCAAGCTGACTGCCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGACGGCACCACt > 1:436789/1‑150 (MQ=32) ccT‑CGACGAAGTGGTGGCCAAGCTGACTGCCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGa > 2:896899/1‑117 (MQ=33) ccT‑CGACGAAGTGGTGGCCAAGCTGACTGCCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGa < 1:896899/117‑1 (MQ=33) ccT‑CGACGAAGTGGTGGCCAAGCTGACTGCCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGACGGCACCACTgt > 2:489692/1‑150 (MQ=35) cT‑CGACGAAGTGGTGGCCAAGCTGACTGCCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGTAGCGGTACTTCAAGCTGACCTACGGCACCACTgtc > 2:1229862/1‑150 (MQ=255) cT‑CGACGAAGTGGTGGCCAAGCTGACTGCCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGACGGCACCACTgtc < 1:489692/150‑1 (MQ=35) cT‑CGACGAAGTGGTGGCCAAGCTGACTGCCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGACGGCACCACTgtc < 2:1154151/150‑1 (MQ=35) t‑CGACGAAGTGGTGGCCAAGCTGACTGCCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGACGGCACCACTgtcg > 1:397829/1‑150 (MQ=35) gtggtgGCCAAGCTGACTGCCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGACGGCACCACTGTCGTCGTGGCa > 2:736389/1‑150 (MQ=35) gtggtgGCCAAGCTGACTGCCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGACGGCACCACTGTCGTCGAgggt < 2:436789/150‑3 (MQ=25) gCCAAGCTGACTGCCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGACGGCACCACTGTCGTCGTGGCAGCCAAc > 2:2100836/1‑150 (MQ=35) gCCAAGCTGACTCCCACCGGGTCGCTGACCGAGGGCGGTGTGTTCACCTACACCATCACCTCGACCAACCTGGACTGTCTGCCGATCAATAACCACTCGTAGCTGTACTTCAAGCTGACCGACGGCACCTCTGTCGTCGGGGCAGCCAAc < 2:452297/150‑1 (MQ=11) cAAGCTGACTGCCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTg < 2:762853/103‑1 (MQ=33) cAAGCTGACTGCCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTg > 1:762853/1‑103 (MQ=32) cAAGCTGACTGCCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACCTCAAGCTGACCGACGGCACCACTGTCGTCGTGGCAGCCAACAg > 1:820396/1‑150 (MQ=21) aaGCTGACCGCCCCCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGACGGCACCACTGTCGTCGTGGCAGCCAACAGc < 1:494790/150‑1 (MQ=25) tGCCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGACGGCACCACTGTCGTCGTGGCAGCCAACAGCACCACggg > 1:170072/1‑150 (MQ=38) tcaccgccTTCGGTCACCGAAGG‑GGTGAGATCACCTAGACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGACGGCACCACTGTCGTCGTGGCAGCCAACAGCACCACGGGCt > 1:1952331/7‑150 (MQ=11) tcaccgccTTCGGTCACCGAAGG‑GGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGACGGCACCACTGTCGTCGTGGCa < 1:190365/125‑1 (MQ=11) tcaccgccTTCGGTCACCGAAGG‑GGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGACGGCACCACTGTCGTCGTGGCa > 2:190365/7‑131 (MQ=11) tcaccgccTTCGGTCACCGAAGG‑GGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGACGGCACCACTGTCGTCGTGGCAGCCAACAGCACCACGGGCt > 2:2185060/7‑150 (MQ=11) tcaccgccTTCGGTCACCGAAGG‑GGTGAGATCACCTAAACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGACGGCACCACTGTCGTCGTGGCAGCCAACAGCACCACGGGCt > 1:1952035/7‑150 (MQ=11) aCCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGCCCAAGACACACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGCCGGCACCCCTCTCGTCGTGGCAGCCAACAGCACCACCGGcgcg > 2:592920/1‑150 (MQ=11) aCCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGACGGCACCACTGTCGTCGTGGCAGCCAACAGCACCACGGGCTCg > 2:2099312/1‑150 (MQ=40) aCCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGACGGCACCACTGTCGTCGTGGCAGCCAACAGCACCACGGGCTCg > 1:361736/1‑150 (MQ=40) ccccTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGACGGCACCACTGTCGTCGTGGCAGCCAACAGCACCACGGGCTCgg > 1:1866052/1‑150 (MQ=39) cTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGACGGCAAAAATTTCGTCGTGGCAGCCAACAGCACCACGGGCTCGGCGa > 1:1706368/1‑150 (MQ=255) tCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGACGGCACCACTGTCGTCGTGGCAGCCAACAGCACCACGGGCTCGGCGACt < 1:35545/150‑1 (MQ=255) tGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACCTCAAGCTGACCGACGGCACCACTGTCGTCGTGGCAGCCAACAGCACCACGGGCTCGGCGACTGCaa < 2:820396/150‑1 (MQ=255) gACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGACGGCACCACTGTCGTCGTGGCAGCCAACAGCACCACGGGCTCGGCGACTGCAAc < 2:170072/150‑1 (MQ=40) caCCGAAGG‑GGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGACGGCACCACTGTCGTCGTGGCAGCCAACAGCACCACGGGCTCGGCGACTGCAAcc < 1:2185060/149‑1 (MQ=255) ccGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGACGGCACCACTGTCGTCGTGGCAGCCAACAGCACCACGGGCTCGGCGACTGCAACCg > 2:1471110/1‑150 (MQ=39) cGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACACAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGCCGGCACCACTGTCGTCGTGGCAGCCAACAGCACCACGGGCTCGGCGACTGCAACCGc < 2:769738/150‑1 (MQ=255) cGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGACGGCACCACTGTCGTCGTGGCAGCCAACAGCACCACGGGCTCGGCGACTGCAACCGc > 2:1603786/1‑150 (MQ=38) gAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGACGGCACCACTGTCGTCGTGGCAGCCAACAGCACCACGGGCTCGGCGACTGCAACCGCa < 1:1523233/150‑1 (MQ=38) aGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGACGGCACCACTGTCGTCGTGGCAGCCAACAGCACCACGGGCTCGGCGACTGCAACCGCAcc < 1:2100836/150‑1 (MQ=38) gCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGACGGCACCACTGTCGTCGTGGCAGCCAACAGCACCACGGGCTCGGCGACTGCAACCGCACCAg > 2:185037/1‑150 (MQ=39) | AGATCAGCTTGGGCATCAACTCGGCGGTGGACGCCACTGGTGCTGCATTCGAGAACCTTGAGCTGGGCGGTGCTGCTTCGGTTCAAGTCACCGACACCCT‑CGACGAAGTGGTGGCCAAGCTGACTGCCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGACGGCACCACTGTCGTCGTGGCAGCCAACAGCACCACGGGCTCGGCGACTGCAACCGCACCAG > NC_002947/199542‑199838 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |