| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 2,372,127:1 | +C | 5.9% | intergenic (+36/+76) | gdhB → / ← PP_2081 | NAD‑specific glutamate dehydrogenase/phosphoenolpyruvate synthase regulatory protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 2,372,127 | 1 | . | C | 5.9% | 409.5 / 18.3 | 101 | intergenic (+36/+76) | gdhB/PP_2081 | NAD‑specific glutamate dehydrogenase/phosphoenolpyruvate synthase regulatory protein |
| Reads supporting (aligned to +/- strand): ref base . (46/49); new base C (3/3); total (49/52) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.64e-01 | |||||||||||
Only 100 of 103 total aligned reads displayed.
GACGACCTGCGCAATGCCACGGGCACTGACTATGCGATGTACGCGG‑TGGCCAACCGCGAGCTGGTCGACCTGGCCATGAGCGGGCAGGCAGCGGTGGTGCCGTCCTGAGCCTTGTAGTGAGGTAAAACAAAGCCCCGGCAGTGA‑TGCCGGGGCTTTTTTTTGTATGCCTGGGCGGGCCATTTCGCGGGTGAACCCGCTCCTACA‑GGGGGGGCGGGGCTGTTACTTGAACCGTCTCTCCACGCCTTTTTCGACCAGGATCTTGGCGGAAATCTCTTCCACCGAAAAATGCGTGG > NC_002947/2371984‑2372276 | gacgacCTGCGCAATGCCACGGGCACTGACTATGCGATGTACGCGG‑TGGCCAACCGCGAGCTGGTCGACCTGGCCATGAGCGGGCAGGCAGCGGTGGTGCCGTCCTGAGCCTTGTAGTGAGGTAAAACAAAGCCCCGGCAGTGA‑TGCCgg < 1:31954/150‑1 (MQ=255)gacgacCTGCGCAATGCCACGGGCACTGACTATGCGATGTACGCGG‑TGGCCAACCGCGAGCTGGTCGACCTGGCCATGAGCGGGCAGGCAGCGGTGGTGCCGTCCTGAGCCTTGTAGTGAGGTAAAACAAAGCCCCGGCAGTGA‑TGCCgg < 2:1502921/150‑1 (MQ=255) cTGCGCAATGCCACGGGCACTGACTATGCGATGTACGCGG‑TGGCCAACCGCGAGCTGGTCGACCTGGCCATGAGCGGGCAGGCAGCGGTGGTGCCGTCCTGAGCCTTGTAGTGAGGTAAAACAAAGCCCCGGCAGTGA‑TGCCGGGGCttt > 1:2265440/1‑150 (MQ=255) cTGCGCAATGCCACGGGCACTGACTATGCGATGTACGCGG‑TGGCCAACCGCGAGCTGGTCGACCTGGCCATGAGCGGGCAGGCAGCGGTGGTGCCGTCCTGAGCCTTGTAGTGAGGTAAAACAAAGCCCCGGCAGTGA‑TGCCGGGGCttt > 2:541215/1‑150 (MQ=255) gcgcAATGCCACGGGCACTGACTATGCGATGTACGCGG‑TGGCCAACCGCGAGCTGGTCGACCTGGCCATGAGCGGGCAGGCAGCGGTGGTGCCGTCCTGAGCCTTGTAGTGAGGTAAAACAAAGCCCCGGCA‑TCACTGCCGGGGCtttgt < 1:1090089/150‑3 (MQ=255) cgcAATGCCACGGGCACTGACTATGCGATGTACGCGG‑TGGCCAACCGCGAGCTGGTCGACCTGGCCATGAGCGGGCAGGCAGCGGTGGTGCCGTCCTGAGCCTTGTAGTGAGGTAAAACAAAGCCCCGGCAGTGA‑TGCCGGGGCtttttt < 1:1460546/150‑1 (MQ=255) gcAATGCCACGGGCACTGACTATGCGATGTACGCGG‑TGGCCAACCGCGAGCTGGTCGACCTGGCCATGAGCGGGCAGGCAGCGGTGGTGCCGTCCTGAGCCTTGTAGTGAGGTAAAACAAAGCCCCGGCAGTGA‑TGCCGGGGCttttttt > 2:647099/1‑150 (MQ=255) aTGCCACGGGCACTGACTATGCGATGTACGCGG‑TGGCCAACCGCGAGCTGGTCGACCTGGCCATGAGCGGGCAGGCAGCGGTGGTGCCGTCCTGAGCCTTGTAGTGAGGTAAAACAAAGCCCCGGCAGTGA‑TGCGGGGGCTTGTTTTTGt > 2:801393/1‑150 (MQ=255) aTGCCACGGGCACTGACGATGCGATGTACGCGG‑TGGCCAACCGCGAGCTGGTCGACCTGGCCATGAGCGGGCAGGCAGCGGTCGTGCCGTCCTGAGCCTTGTAGTGAGGTAAAACAAAGCCCCGGCA‑TCACTGCCGGGGCtttgttttac < 1:186040/150‑3 (MQ=38) gcagcGGGTACTGGCTTTGCGTTGTACGCGG‑TGGCCAACCGCGAGCTGGTCGACCTGGCCATGAGCGGGCAGGCAGCGGTGGTGCCGTCCTGAGCCTTGTAGTGAGGTAAAACAAAGCCCCGGCAGTGA‑TGCCGGGGCTTTTTTTTGTAt < 2:1117683/146‑1 (MQ=255) ccACGGGCACTGACTATGCGATGTACGCGG‑TGGCCAACCGCGAGCTGGTCGACCTGGCCATGAGCGGGCAGGCAGCGGTGGTGCCGTCCTGAGCCTTGTAGTGAGGTAAAACAAAGCCCCGGCAGTGA‑TGCCGGGGCTTTTTTTTGTATg > 1:1266521/1‑150 (MQ=255) ccACGGGCACTGACTATGCGATGTACGCGG‑TGGCCAACCGCGAGCTGGTCGACCTGGCCATGAGCGGGCAGGCAGCGGTGGTGCCGTCCTGAGCCTTGTAGTGAGGTAAAACAAAGCCCCGGCAGTGA‑TGCCGGGGCTTTTTTTTGTATg > 1:30068/1‑150 (MQ=255) ccACGGGCACTGACTATGCGATGTACGCGG‑TGGCCAACCGCGAGCTGGTCGACCTGGCCATGAGCGGGCAGGCAGCGGTGGTGCCGTCCTGAGCCTTGTAGTGAGGTAAAACAAAGCCCCGGCAGTGA‑TGCCGGGGCTTTTTTTTGTATg > 2:931543/1‑150 (MQ=255) aCGGGCACTGACTATGCGATGTACGCGG‑TGGCCAACCGCGAGCTGGTCGACCTGGCCATGAGCGGGCAGGCAGCGGTGGTGCCGTCCTGAGCCTTGTAGTGAGGTAAAACAAAGCCCCGGCA‑TCACTGCCGGGGCtttgtt < 1:928310/141‑1 (MQ=255) aCGGGCACTGACTATGCGATGTACGCGG‑TGGCCAACCGCGAGCTGGTCGACCTGGCCATGAGCGGGCAGGCAGCGGTGGTGCCGTCCTGAGCCTTGTAGTGAGGTAAAACAAAGCCCCGGCA‑TCACTGCCGGGGCtttgtt > 2:928310/1‑138 (MQ=255) cGGGCACTGACTATGCGATGTACGCGG‑TGGCCAACCGCGAGCTGGTCGACCTGGCCATGAGCGGGCAGGCAGCGGTGGTGCCGTCCTGAGCCTTGTAGTGAGGTAAAACAAAGCCCCGGCAGTGA‑TGCCGGGGCTTTTTTTTGTATGCCt > 1:2188826/1‑150 (MQ=255) aCTGACTATGCGATGTACGCGG‑TGGCCAACCGCGAGCTGGTCGACCTGGCCATGAGCGGGCAGGCAGCGGTGGTGCCGTCCTGAGCCTTGTAGTGAGGTAAAACAAAGCCCCGGCAGTGA‑TGCCGGGGCTTTTTTTTGTATGCCTgggcg > 2:431958/1‑150 (MQ=255) aCTGACTATGCGATGTACGCGG‑TGGCCAACCGCGAGCTGGTCGACCTGGCCATGAGCGGGCAGGCAGCGGTGGGGCCGTCCTGAGCCTTGTAGTGAGGTAAAACAAAGCCCCGGCAGTGA‑TGCCGGGGCTTTTTTTTGTATGCCTgggcg > 1:1070197/1‑150 (MQ=255) cTGACTATGCGATGTACGCGG‑TGGCCAACCGCGAGCTGGTCGACCTGGCCATGAGCGGGCAGGCAGCGGTGGTGCCGTCCTGAGCCTTGTAGTGAGGTAAAACAAAGCCCCGGCAGTGA‑TGCCGGGGCTTTTTTTTGTATGCCTgggcgg < 1:931543/150‑1 (MQ=255) aTGCGATGTACGCGG‑TGGCCAACCGCGAGCTGGTCGACCTGGCCATGAGCGGGCAGGCAGCGGTGGTGCCGTCCTGAGCCTTGTAGTGAGGTAAAACAAAGCCCCGGCAGTGA‑TGCCGGGGCTTTTTTTTGTATGCCTGGGCGGGCCAtt < 1:1414022/150‑1 (MQ=255) tGCGATGTACGCGG‑TGGCCAACCGCGAGCTGGTCGACCTGGCCATGAGCGGGCAGGCAGCGGTGGTGCCGTCCTGAGCCTTGTAGTGAGGTAAAACAAAGCCCCGGCAGTGA‑TGCCGGGGCTTTTTTTTGTATGCCTGGGCGGGCCAttt > 1:2179466/1‑150 (MQ=255) aTGTACGCGG‑TGGCCAACCGCGAGCTGGTCGACCTGGCCATGAGCGGGCAGGCAGCGGTGGTGCCGTCCTGAGCCTTGTAGTGAGGTAAAACAAAGCCCCGGCAGTGA‑TGCCGGGGCTTTTTTTTGTATGCCTGGGCGGGCCATTTcgcg < 1:594910/150‑1 (MQ=255) tGTACGCGG‑TGGCCAACCGCGAGCTGGTCGACCTGGCCATGAGCGGGCAGGCAGCGGTGGTGCCGTCCTGAGCCTTGTAGTGAGGTAAAACAAAGCCCCGGCAGTGA‑TGCCGGGGCTTTTTTTTGTATGCCTGGGCGGGCCATTTCGCgg < 2:2179466/150‑1 (MQ=255) tcgcgGTTGGCC‑ACCGCGAGCTGGTCGACCTGGCCATGAGCGGGCAGGCAGCGGTGGTGCCGTCCTGAGCCTTGTAGTGAGGTAAAACAAAGCCCCGGCAGTGA‑TGCCgggg > 1:677879/2‑112 (MQ=255) tcgcgG‑TTGGCCACCGCGAGCTGGTCGACCTGGCCATGAGCGGGCAGGCAGCGGTGGTGCCGTCCTGAGCCTTGTAGTGAGGTAAAACAAAGCCCCGGCAGTGA‑TGCCgggg < 2:677879/111‑1 (MQ=255) ggCCAACCGCGAGCTGGTCGACCTGGCCATGAGCGGGCAGGCAGCGGTGGTGCCGTCCTGAGCCTTGTAGTGAGGTAAAACAAAGCCCCGGCAGTGA‑TGCCGGGGCTTTTTTTTGTATGCCTGGGCGGGCCATTTCGCGGGTGAACCCGc < 2:1266521/150‑1 (MQ=255) cAACCGCGAGCTGGTCGACCTGGCCATGAGCGGGCAGGCAGCGGTGGTGCCGTCCTGAGCCTTGTAGTGAGGTAAAACAAAGCCCCGGCAGTGA‑TGCCgg > 1:833544/1‑100 (MQ=255) cAACCGCGAGCTGGTCGACCTGGCCATGAGCGGGCAGGCAGCGGTGGTGCCGTCCTGAGCCTTGTAGTGAGGTAAAACAAAGCCCCGGCAGTGA‑TGCCgg < 2:833544/100‑1 (MQ=255) cAACCGCGAGCTGGTCGACCTGGCCATGAGCGGGCAGGCAGCGGTGGTGCCGTCCTGAGCCTTGTAGTGAGGTAAAACAAAGCCCCGGCAGTGA‑TGCCGGGGCTTTTTTTTGTATGCCTGGGCGGGCCATTTCGCGGGTGAACCCGCTcc > 1:1123908/1‑150 (MQ=255) cAACCGCGAGCTGGTCGACCTGGCCATGAGCGGGCAGGCAGCGGTGGTGCCGTCCTGAGCCTTGTAGTGAGGTAAAACAAAGCCCCGGCAGTGA‑TGCCGGGGCTTTTTTTTGTATGCCTGGGCGGGCCATTTCGCGGGTGAACCCGCTcc > 2:1525588/1‑150 (MQ=255) gcgAGATGGCCGACCTGGCCATGAGCGGGCAGGCCGCGATGGTGCCGTCCTGAGCGTTGTAGTGAGGTAAGCAGTCTTCCCGGCAGTGA‑TGCCGGGGCTTTTTTTTGTATGCCTGGGCGGGCCATTTCGCGGGTGAACCCGCTCCTACA‑g < 1:541215/150‑1 (MQ=255) cgAGCTGGTCGACCTGGCCATGAGCGGGCAGGCAGCGGTGGTGCCGTCCTGAGCCTTGTAGTGAGGTAAAACAAAGCCCCGGCAGTGA‑TGCCGGGGCTTTTTTTTGTATGCCTGGGCGGGCCATTTCGCGGGTGAACCCGCTCCTACA‑gg < 2:1027183/150‑1 (MQ=255) gAGCTGGTCGACCTGGCCATGAGCGGGCAGGCAGCGGTGGTGCCGTCCTGAGCCTTGTAGTGAGGTAAAACAAAGCCCCGGCAGTGA‑TGCCGGGGCTTTTTTTTGTATGCCTGGGCGGGCCATTTCGCGGGTGAACCCGCTCCTACA‑ggg < 1:889802/150‑1 (MQ=255) gCTGGTCGACCTGGCCATGAGCGGGCAGGCAGCGGTGGTGCCGTCCTGAGCCTTGTAGTGAGGTAAAACAAAGCCCCGGCAGTGA‑TGCCGGGTCTTTTTTTTGTATGCCTGGGCGGGCCATTTCGCGGGTGAACCCGCTCCTACA‑ggggg < 1:431958/150‑1 (MQ=255) cTGGTCGACCTGGCCATGAGCGGGCAGGCAGCGGTGGTGCCGTCCTGAGCCTTGTAGTGAGGTAAAACAAAGCCCCGGCAGTGA‑TGCCGGGGCTTTTTTTTGTATGCCTGGGCGGGCCATTTCGCGGGTGAACCCGCTCCTACA‑gggggg > 2:16690/1‑150 (MQ=255) tGGTCGACCTGGCCATGAGCGGGCAGGCAGCGGTGGTGCCGTCCTGAGCCTTGTAGTGAGGTAAAACAAAGCCCCGGCAGTGA‑TGCCGGGGCTTTTTTTTGTATGCCTGGGCGGGCCATTTCGCGGGTGAACCCGCTCCTACA‑ggggggg > 1:1859987/1‑150 (MQ=255) ggTCGACCTGGCCATGAGCGGGCAGGCAGCGGTGGTGCCGACCTGAGCCTTGTAGAGATGCAAAACAAAGCCCCGGCAGTGA‑CGCCGGGGCTTTTTTTTGTATGCCTGGGCGGGGCAGTTCGCGGGTGATCCCGCTCCTACA‑GAGggggc < 2:1619753/150‑1 (MQ=255) tCGACCTGGCCATGAGCGGGCAGGCAGCGGTGGTGCCGTCCTGAGCCTTGTAGTGAGGTAAAACAAAGCCCCGGCAGTGA‑TGCCGGGGCTTTTTTTTGTATGCCTGGGCGGGCCATTTCGCGGGTGAACCCGCTCCTACA‑GGGggggcgg > 1:77167/1‑150 (MQ=255) gACCTGGCCATGAGCGGGCAGGCAGCGGTGGTGCCGTCCTGAGCCTTGTAGTGAGGTAAAACAAAGCCCCGGCAGTGA‑TGCCGGGGCTTTTTTTTGTATGCCTGGGCGGGCCAtt > 2:765086/1‑115 (MQ=255) gACCTGGCCATGAGCGGGCAGGCAGCGGTGGTGCCGTCCTGAGCCTTGTAGTGAGGTAAAACAAAGCCCCGGCAGTGA‑TGCCGGGGCTTTTTTTTGTATGCCTGGGCGGGCCAtt < 1:765086/115‑1 (MQ=255) aacttGGCCATGAGCGGGCAGGCAGCGGTGGTGCCGTCCTGAGCCTTGTAGTGAGGTAAAACAAAGCCCCGGCAGTGA‑TGCCGGGGCTTTTTTTTGTATGCCTGGGCGGGCCATTTCGCGGGTGAACCCGCTCCTACA‑GGGggggcgggg < 1:1167972/146‑1 (MQ=255) aCCTGGCCATGAGCGGGCAGGCAGCGGTGGTGCCGTCCTGAGCCTTGTAGTGAGGTAAAACGAAGCCCCGGCAGTGA‑TGCCg < 2:2372163/82‑1 (MQ=255) aCCTGGCCATGAGCGGGCAGGCAGCGGTGGTGCCGTCCTGAGCCTTGTAGTGAGGTAAAACGAAGCCCCGGCAGTGA‑TGCCg > 1:2372163/1‑82 (MQ=255) cTGGCCATGAGCGGGCGGGCAGCGGTGGTGCCGTCCTGAGCCTTGTAGTGAGGTAAAACAAAGCCCCGGCAGTGA‑TGCCGGGGCTTTTTTTTGTATGCCTGGGCGGGCCATTTCGCGGGTGAACCCGCTCCTACA‑GGGGGGGCGGGGCTg > 2:643342/1‑150 (MQ=255) cTGGCCATGAGCGGGCAGGCAGCGGTGGTGTCGTCCTGAGCCTTGTAGTGAGGTAAAACAAAGCCCCGGCAGTGA‑TGCCGGGGCTTTTTTTTGTATGCCTGGGCGGGCCATTTCGCGGGTGAACCCGCTCCTACA‑GGGGGGGCGGGGCTg > 1:1709849/1‑150 (MQ=255) cTGGCCATGAGCGGGCAGGCAGCGGTGGTGCCGTCCTGAGCCTTGTAGTGAGGTAAAACAAAGCCCCGGCAGTGA‑TGCCGGGGCTTTTTTTTGTATGCCTGGGCGGGCCATTTCGCGGGTGAACCCGCTCCTACA‑GGGGGGGCGGGGCTg < 2:1859987/150‑1 (MQ=255) cTGGCCATGAGCGGGCAGGCAGCGGTGGTGCCGTCCTGAGCCTTGTAGTGAGGTAAAACAAAGCCCCGGCAGTGA‑TGCCGGGGCTTTTTTTTGTATGCCTGGGCGGGCCATTTCGCGGGTGAACCCGCTCCTACA‑GGGGGGGCGGGGCTg > 2:1371909/1‑150 (MQ=255) cTGGCCATGAGCGGGCAGGCAGCGGTGGTGCCGTCCTGAGCCTTGCAGCCTGCCAAAACAAAGCCCCGGCAGTGA‑TGCGGGGGCTTTTTTTTGTATGCCTGGGCGGGCCATTTCGCGGGAGAACCCGCTCCTACA‑GGGgggggtgggcgg > 1:1024668/1‑148 (MQ=255) tGGCCATGAGCTGGCAGGCAGCGGTGGTGCCGTCCTGAGCCTTGTAGTGAGGTAAAACAAAGCCCCGGCAGTGA‑TGCCGGGGCTTTTTTTTGTATGCCTGGGCGGGCCATTTCGCGGGTGAACCCGCTCCTACA‑GGGGGGGCGGGGCTGt < 1:647099/150‑1 (MQ=255) cATGAGCGGGCAGGCAGCGGTGGTGCCGTCCTGAGCCTTGTAGTGAGGTAAAACAAAGCCCCGGCAGTGA‑TGCCGGGGCTTTTTTTTGTATGCCTGGGCGGGCCATTTCGCGGGTGAACCCGCTCCTACA‑GGGGGGGCGGGGCTGTTACt > 1:681016/1‑150 (MQ=255) aTGAGCGGGCAGGCAGCGGTGGTGCCGTCCTGAGCCTTGTAGTGAGGTAAAACAAAGCCCCGGCAGTGA‑TGCCGGGGCTTTTTTTTGTATGCCTGGGCGGGCCATTTCGCGGGTGAACCCGCTCCTACA‑GGGGGGGCGGGGCTGTTACtt < 2:1181436/150‑1 (MQ=255) aGCGGGCAGGCAGCGGTGGTGCCGTCCTGAGCCTTGTAGTGAGGTAAAACAAAGCCCCGGCAGTGA‑TGCCGGGGCTTTTTTTTGTATGCCTGGGCGGGCCATTTCGCGGGTGAACCCGCTCCTACA‑GGGGGGGCGGGGCTGTTACTTGaa < 1:324355/150‑1 (MQ=255) aGCGGGCAGGCAGCGGTGGTGCCGTCCTGAGCCTTGTAGTGAGGTAAAACAAAGCCCCGGCAGTGA‑TGCCGGGGCTTTTTTTTGTATGCCTGGGCGGGCCATTTCGCGGGTGAACCCGCTCCTACA‑GGGGGGGCGGGGCTGTTACTTGaa < 2:30068/150‑1 (MQ=255) gCGGGCAGGCAGCGGTGGTGCCGTCCTGAGCCTTGTAGTGAGGTAAAACAAAGCCCCGGCAGTGA‑TGCCGGGGCTTTTTTTTGTATGCCTGGGCGGGCCATTTCGCggg > 2:2155233/1‑109 (MQ=255) gCGGGCAGGCAGCGGTGGTGCCGTCCTGAGCCTTGTAGTGAGGTAAAACAAAGCCCCGGCAGTGA‑TGCCGGGGCTTTTTTTTGTATGCCTGGGCGGGCCATTTCGCggg < 1:2155233/109‑1 (MQ=255) aggcagCGGTGGTGCCGTCCTGAGCCTTGTAGTGAGGTAAAACAAAGCCCCGGCAGTGA‑TGCCGGGGCTTTTTTTTGTATGCCTGGGCGGGCCATTTCGCGGGTGAACCCGCTCCTACA‑GGGGGGGCGGGGCTGTTACTTGAACCGtctc < 2:2265440/150‑1 (MQ=255) gcagCGGTGGTGCCGTCCTGAGCCTTGTAGTGAGGTAAAACAAAGCCCCGGCAGTGA‑TGCCGGGGCTTTTTTTTGTATGCCTGGGCGGGCCATTTCGCGGGTGAACCCGCTCCTACA‑GGGGGGGCGGGGCTGTTACTTGAACCGtctctc < 1:16690/150‑1 (MQ=255) gcagCGGTGGTGCCGTCCTGAGCCTTGTAGTGAGGTAAAACAAAGCCCCGGCAGTGA‑TGCCGGGGCTTTTTTTTGTATGCCTGGGCGGGCCATTTCGCGGGTGAACCCGCTCCTACA‑GGGGGCGCGGGGCTGTTACTTGAACCGtctctc < 2:1123908/150‑1 (MQ=255) gCGGTGGTGCCGTCCTGAGCCTTGTAGTGAGGTAAAACAAAGCCCCGGCAGTGA‑TGCCGGGGCTTTTTTTTGTATGCCTGGGCGGGCCATTTCGCGGGTGAACCCGCTCCTACA‑GGGGGGGCGGGGCTGTTACTTGAACCGTCTCTCCAc < 2:681016/150‑1 (MQ=255) gtggtgCCGTCCTGAGCCTTGTAGTGAGGTAAAACAAAGCCCCGGCAGTGA‑TGCCGGGGCTTTTTTTTGTATGCCTGGGCGGGCCATTTCGCGGGTGAACCCGCTCCTACA‑GGGGGGGCGGGGCTGTTACTTGAACCGTCTCTCCAc < 2:431604/147‑1 (MQ=255) gCCGTCCTGAGCCTTGTAGTGAGGTAAAACAAAGCCCCGGCAGTGA‑TGCCGGGGCTTTTTTTTGTATGCCTGGGCGGGCCATTTCGCGGGTGAACCCGCTCCTACA‑GGGGGGGCGGGGCTGTTACTTGAACCGTCTCTCCACGCCttttt < 1:643342/150‑1 (MQ=255) ccGTCCTGAGCTTTTTAGTGAGGTAAAACAAAGCCCCGGCAGTGA‑TGCCGGGGCTTTTTTTTGTATGCCTGGGCGGGCCATTTCGCGGGTGAACCCGCTCCTACA‑GGGGGGGCGGGGCTGTTACTTGAACCGTCTCTCCACGCCTTTTTc < 1:829014/150‑1 (MQ=255) gTCCTGAGCCTTGTAGTGAGGTAAAACAAAGCCCCGGCAGTGA‑TGCCGGGGCTTTTTTTTGTATGCCTGGGCGGGCCATTTCGCGGGTGAACCCGCTCCTACA‑GGGGGGGCGGGGCTGTTACTTGAACCGTCTCTCCACGCCTTTTTCGa < 1:1115839/150‑1 (MQ=255) tCCTGGGCCTGGTAGTGAGTTAAAACAAGGCCCCGGCATTGA‑TGCCGGGGTTTTTTTTTGTATGCCTGGGCGGGCCATTTCGCGGGTGAACCCGCTCCTACA‑GGGGGGGCGGGGCTGTTACTTGAACCGTCTCTCCACGCCTTTTTCGAc < 2:907834/150‑1 (MQ=255) tCCTGAGCCTTGTAGTGAGGTAAAACAAAGCCCCGGCAGTGA‑TGCCGGGGCTTTTTTTTGTATGCCTGGGCGGGCCATTTCGCGGGTGAACCCGCTCCTACA‑GGGGGGGCGGGGCTGTTACTTGAACCGTCTCTCCACGCCTTTTTCGAc > 1:494466/1‑150 (MQ=255) tCCTGAGCCTTGTAGTGAGGTAAAACAAAGCCCCGGCAGTGA‑TGCCGGGGCTTTTTTTTGTATGCCTGGGCGGGCCATTTCGCGGGTGAACCCGCTCCTACA‑GGGGGGGCGGGGCTGTTACTTGAACCGTCTCTCCACGCCTTTTTCGAc < 2:1377006/150‑1 (MQ=255) cTGAGCCTTGTAGTGAGGTAAAACAAAGCCCCGGCAGTGA‑TGCCGGGGCTTTTTTTTGTATGCCTGGGCGGGCCATTTCGCGGGTGAACCCGCTCCTACA‑GGGGGGGCGGGGCTGTTACTTGAACCGTCTCTCCACGCCTTTTTCGACCa < 2:494466/150‑1 (MQ=255) gAGCCTTGTAGTGAGGTAAAACAAAGCCCCGGCAGGGA‑TGCCGGGGCTTTTTTTTGTATTCCTGGGCGGTCCATTTCGCGGGTGAACCCGCTCCTACA‑GGGGGGGCGGGGCTGTTACTTGAACCGTCTCTCCACGCATTTTTCGTCCAgg > 1:1374248/1‑150 (MQ=255) ccTTGTAGTGAGGTAAAACAAAGCCCCGGCAGTGA‑TGCCGGGGCTTTTTTTTGTATGCCTGGGCGGGCCATTTCGCGGGTGAACCCGCTCCTACA‑GGGGGGGCGGGGCTGTTACTTGAACCGTCTCTCCACGCCTTTTTCGACCAGGATc > 1:41839/1‑150 (MQ=255) cTTGTAGTGAGGTAAAACAAAGCCCCGGCAGTGA‑TGCCGGGGCTTTTTTTTGTATGCCTGGGCGGGCCATTTCGCGGGTGAACCCGCTCCTACA‑GGGGGGGCGGGGCTGTTACTTGAACCGTCTCTCCACGCCTTTTTCGACCAGGATCt > 2:238171/1‑150 (MQ=255) tAGTGAGGTAAAACAAAGCCCCGGCAGTGA‑TGCCGGGGCTTTTTTTTGTATGCCTGGGCGGGCCATTTCGCGGGTGAACCCGCTCCTACA‑GGGGGGGCGGGGCTGTTACTTGAACCGTCTCTCCACGCCTTTTTCGACCAGGATCTTGGc < 1:1525588/150‑1 (MQ=255) tGAGGTAAAACAAAGCCCCGGCAGTGA‑TGCCGGGGCTTTTTTTTGTATGCCTGGGCGGGCCATTTCGCGGGTGAACCCGCTCCTACA‑GGGGGGGCGGGGCTGTTACTTGAACCGTCTCTCCACGCCTTTTTCGACCAGGGTCTTGGCggg > 1:271486/1‑149 (MQ=255) gggTAAAACAAAGCTCCGGCAGTGA‑TGCCGGGGCTTTTTTTTGTATGCCTGGGCGGGCCATTTCGCGGGTGAACCCGCTCCTACA‑GGGGGGGCGGGGCTGTTACTTGAACCGTCTCTCCACGCCTTTTTCGACCAGGATCTTGGCGGaaa < 1:801393/149‑1 (MQ=255) atacaaaaaaaaGCCCCGGCA‑TCACTGCCGGGGCTTTGTTTTGTATGCCTGGGCGGGCCATTTCGCGGGTGAACCCGCTCCTACA‑GGGGGGGCGGGGCTGTTACTTGAACCGTCTCTCCACGCCTTTTTCGACCAGGATCTTGGCGGaaa > 1:351907/5‑150 (MQ=38) gTAAAACAAAGCCCCGGCAGTGA‑TGCCGGGGCTTTTTTTTGTATGCCTGGGCGGGCCATTTCGCgg < 2:2050578/66‑1 (MQ=255) gTAAAACAAAGCCCCGGCAGTGA‑TGCCGGGGCTTTTTTTTGTATGCCTGGGCGGGCCATTTCGCgg > 1:2050578/1‑66 (MQ=255) gTAAAACAAAGCCCCGGCAGTGA‑TGCCGGGGCTTTTTTTTGTATGCCTGGGCGGGCCATTTCGCGGGTGAACCCGCTCCTACA‑gggggg < 1:1110052/89‑1 (MQ=255) gTAAAACAAAGCCCCGGCAGTGA‑TGCCGGGGCTTTTTTTTGTATGCCTGGGCGGGCCATTTCGCGGGTGAACCCGCTCCTACA‑gggggg > 2:1110052/1‑89 (MQ=255) gTAAAACAAAGCCCCGGCAGTGA‑TGCCGGGGCTTTTTTTTGTATGCCTGGGCGGGCCATTTCGCGGGTGAACCCGCTCCTACA‑GGGGGGGCGGGGCTGTTACTTGAACCGTCTCTCCACGCCTTTTTCGACCAGGATCTTGGCGGAAAtc > 2:154550/1‑150 (MQ=255) tAAAACAAAGCCCCGGCAGTGA‑TGCCGGGGCTTTTTTTTGTATGCCTGGGCGGGCCATTTCGCGGGTGAACCCGCTCCTACA‑GGGGGGGCGGGGCTGTTACTTGAACCGTCTCTCCACGCCTTTTTCGACCAGGATCTTGGCGGAAAtct > 2:1310564/1‑150 (MQ=255) aaaaaaaaGCCCCGGCATCAC‑TGCCGGGGCTTTTTTTTGTATGCCTGGGCGGGCCATTTCGCGGGTGAACCCGCTCCTACA‑GGGGGGGCGGGGCTGtt < 2:789197/98‑1 (MQ=37) aaaaaaaaGCCCCGGCATCAC‑TGCCGGGGCTTTTTTTTGTATGCCTGGGCGGGCCATTTCGCGGGTGAACCCGCTCCTACA‑GGGGGGGCGGGGCTGtt > 1:789197/1‑98 (MQ=37) aaaaaaaaGCCCCGGCATCAC‑TGCCGGGGCTTTTTTTTGTATGCCTGGGCGGGCCATTTCGCGGGTGAACCCGCTCCTACA‑GGGGGGGCGGGGCTGTTACTTGAACCGTCTCTCCACGCCTTTTTCGAc < 1:1759570/129‑1 (MQ=38) aaaaaaaaGCCCCGGCA‑TCACTGCCGGGGCTTTTTTTTGTATGCCTGGGCGGGCCATTTCGCGGGTGAACCCGCTCCTACA‑GGGGGGGCGGGGCTGTTACTTGAACCGTCTCTCCACGCCTTTTTCGAc > 2:1759570/1‑129 (MQ=38) aaaaCAAAGCCCCGGCAGTGA‑TGCCGGGGCTTTTTTTTGTATGCCTGGGCGGGCCATTTCGCGGGTGAACCCGCTCCTACA‑GGGGGGGCGGGGCTGTTAc < 1:860552/100‑1 (MQ=255) aaaaCAAAGCCCCGGCAGTGA‑TGCCGGGGCTTTTTTTTGTATGCCTGGGCGGGCCATTTCGCGGGTGAACCCGCTCCTACA‑GGGGGGGCGGGGCTGTTAc > 2:860552/1‑100 (MQ=255) aaaaCAAAGCCCCGGCAGTGA‑TGCCGGGGCTTTTTTTTGTATGCCTGGGCGGGCCATTTCGCGGGTGAACCCGCTCCTACA‑GGGGGGGCGGGGCTGTTACTTGAACCGTCTCTCCACGCCTTTTTCGACCAGGATCTTGGCGGAAAtctg > 1:1187974/1‑149 (MQ=255) aaaaCAAAGCCCCGGCAGTGA‑TGCCGGGGCTTTTTTTTGTATGCCTGGGCGGGCCATTTCGCGGGTGAACCCGCTCCTACA‑GGGGGGGCGGGGCTGTTACTTGAACCGTCTCTCCACGCCTTTTTCGACCAGGATCTTGGCGGAAAtctc > 2:1799283/1‑150 (MQ=255) aaaaCAAAGCCCCGGCAGTGA‑TGCCGGGGCTTTTTTTTGTATGCCGGGGCGGGCCATTTCGCGGGTGAACCCGCTCCTACA‑GGGGGGGCGGGGCTGTTACTTGAACCGTCTCTCCACGCCTTTTTCGACCAGGATCTTGGCGGAAAtctc > 2:467892/1‑150 (MQ=255) aaCAAAGCCCCGGCAGTGA‑TGCCGGGTCTTTTTTTTGTATGCCTGGGCGGGCCATTTCGCGGGTGAACCCGCTCCTACA‑GGGGGGGCGGGGCTGTTACTTGAACCGTCTCTCCACGCCTTTTTCGACCAGGATCTTGGCGGAAATCTCtt > 1:932902/1‑150 (MQ=255) aaCAAAGCCCCGGCAGTGA‑TGCCGGGGCTTTTTTTTGTATGCCTGGGCGGGCCATTTCGCGGGTGAACCCGCTCCTACAGGGGGGGGCGGGGCTGTTACTTGAACCGTCTCTCCACGCCTTTTTCGACCAGGATCTTGGCGGAAATctct < 2:2188826/150‑1 (MQ=255) aaCAAAGCCCCGGCAGTGA‑TGCCGGGGCTTTTTTTTGTATGCCTGGGCGGGCCATTTCGCGGGTGAACCCGCTCCTACA‑GGGGGGGCGGGGCTGTTACTTGAACCGTCTCTCCACGCCTTTTTCGACCAGGATCTTGGCGGAAATCTCtt < 1:467892/150‑1 (MQ=255) aCAAAGCCCCGGCAGTGA‑TGCCGGGGCTTTTTTTTGTATGCCTGGGCGGGCCATTTCGCGGGTGAACCCGCTCCTACA‑GGGGGGGCGGGGCTGTTACTTGAACCGTCTCTCCACGCCTTTTTCGACCAGGATCTTGGCGGAAATCTCTTc < 1:1455625/150‑1 (MQ=255) ccccGGCAGTGA‑TGCCGGGGCTTTTTTTTGTATGCCTGGGCGGGCCATTTCGCGGGTGAACCCGCTCCTACA‑GGGGGGGCGGGGCTGTTACTTGAACCGTCTCTCCACGCCTTTTTCGACCAGGATCTTGGCGGAAATCTCTTCCACCGa > 2:1021592/1‑150 (MQ=255) ccccGGCAGTGA‑TGCCGGGGCTTTGTTTTGTATGCCTGGGCGGGCCATTTCGCGGGTGAACCCGCTCCTACA‑GGGGGGGCGGGGCTGTTACTTGAACCGTCTCTCCACGCCTTTTTCGACCAGGATCTTGGCGGAAATCTCTTCCACCGa > 2:762121/1‑150 (MQ=255) ccGGCAGTGA‑TGCCGGGGCTTTTTTTTGTATGCCTGGGCGGGCCATTTCGCGGGTGAACCCGCTCCTACA‑GGGGGGGCGGGGCTGTTACTTGAACCGTCTCTCCACGCCTTTTTCGACCAGGATCTTGGCGGAAATCTCTTCCACCGaaa < 1:1310564/150‑1 (MQ=255) aGTGA‑TGCCGGGGCTTTTTTTTGTATGCCTGGGCGGGCCATTTCGCGGGTGAACCCGCTCCTACA‑GGGGGGGCGGGGCTGTTACTTGAACCGTCTCTCCACGCCTTTTTCGACCAGGATCTTGGCGGAAATCTCTTCCACCGAAAAATGc < 1:1982729/150‑1 (MQ=255) gTGA‑TGCCGGGGCTTTTTTTTGTATGCCTGGGCGGGCCATTTCGCGGGTGAACCCGCTCCTACA‑GGGGGGGCGGGGCTGTTACTTGAACCGTCTCTCCACGCCTTTTTCGACCAGGATCTTGGCGGAAATCTCTTCCACCGAAAAATGCg > 1:716454/1‑150 (MQ=255) tta‑TGCCGGTGCTTTTTTTTGTATGCCTGGGGGGGCCATTTCGCGGGTGAACCCGCTCCTACA‑GGGGGGGCGGGGCTGTTACTTGAACCGTCTCTCCACGCCTTTTTCGACCAGGATCTTGGCGGAAATCTCTTCCACCGAAAAATGCGt < 2:1187974/148‑1 (MQ=255) a‑TGCCGGGGCTTTTTTTTGTATGCCTGTGCGGGCCATTTCGCGGGTGAACCCGCTCCTACA‑GGGGGGGCGTGGCTGTTACTTGAACCGTCTCTCCACGCCTTTTTCGACCAGGATCTTGGCGGAAATCTCTTCCACCGAAAAATGCGTgg < 1:1895710/150‑1 (MQ=255) | GACGACCTGCGCAATGCCACGGGCACTGACTATGCGATGTACGCGG‑TGGCCAACCGCGAGCTGGTCGACCTGGCCATGAGCGGGCAGGCAGCGGTGGTGCCGTCCTGAGCCTTGTAGTGAGGTAAAACAAAGCCCCGGCAGTGA‑TGCCGGGGCTTTTTTTTGTATGCCTGGGCGGGCCATTTCGCGGGTGAACCCGCTCCTACA‑GGGGGGGCGGGGCTGTTACTTGAACCGTCTCTCCACGCCTTTTTCGACCAGGATCTTGGCGGAAATCTCTTCCACCGAAAAATGCGTGG > NC_002947/2371984‑2372276 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |