Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 3,376,485:1 | +T | 9.3% | intergenic (+17/‑131) | PP_2975 → / → PP_2976 | insertion element ISR1 protein A3/transposase |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 3,376,485 | 1 | . | T | 9.3% | 269.9 / 23.5 | 75 | intergenic (+17/‑131) | PP_2975/PP_2976 | insertion element ISR1 protein A3/transposase |
Reads supporting (aligned to +/- strand): ref base . (33/35); new base T (3/4); total (36/39) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.16e-01 |
GCGGCATGGATGCATCATTGATGACCAGGCTGCGTGAACTGGAAGAGGAGAACCGTCGGCTCAAGAAGATGTACGCCGAGGAGCGCCTCAAGGCCGAG‑‑ATCATCCAGGAGGCCATGGCAAAAAAGTGGTAAAGCCATCTCAGCGGCGC‑GAGATGGCGCAGCAGGCGGTTCGTTCAGGCAAAGCCAGTATCAAATTAGCGTGCCTGTCGTTTGGTATCAGCACGACTGAACCGCCCCGGGTTTCGCGGAGGCTCCACCCTTTGAGAGAATGGAGCCCATATGAGCAA > NC_002947/3376338‑3376623 | gcggcATGGATGCATCATTGATGACCAGGCTGCGTGAACTGGAAGAGGAGAACCGTCGGCTCAAGAAGATGTACGCCGAGGAGCGCCTCAAGGCCGAG‑‑ATCATCCAGGAGGCCATGGCAAAAAAGTGGTAAAGCCATCTCAGCGGCGC‑ga < 1:968318/150‑1 (MQ=255) cATGGATGCATCATTGATGACCAGGCTGCGTGAACTGGAAGAGGAGAACCGTCGGCTCAAGAAGATGTACGCCGAGGAGCGCCTCAAGGCCGAG‑‑ATCATCCAGGAGGCCATGGCAAAAAAGTGGTAAAGCCATCTCAGCGGCGC‑GAGATg > 2:1417467/1‑150 (MQ=255) aTGGATGCATCATTGATGACCAGGCTGCGTGAACTGGAAGAGGAGAACCGTCGGCTCAAGAAGATGTACGCCGAGGAGCGCCTCAAGGCCGAG‑‑ATCATCCAGGAGGCCATGGCAAAAAAGTGGTAAAGCCATCTCAGCGGCGC‑GAGATgg < 1:1342065/150‑1 (MQ=255) aTGGATGCATCATTGATGACCAGGCTGCGTGAACTGGAAGAGGAGAACCGTCGGCTCAAGAAGATGTACGCCGAGGAGCGCCTCAAGGCCGAG‑‑ATCATCCAGGAGGCCATGGCAAAAAAGTGGTAAAGCCATCTCAGCGGCGC‑GAGATgg < 1:281617/150‑1 (MQ=255) tGGATGCATCATTGATGACCAGGCTGCGTGAACTGGAAGAGGAGAACCGTCGGCTCAAGAAGATGTACGCCGAGGAGCGCCTCAAGGCCGAG‑‑ATCATCCAGGAGGCCATGGCAAAAAAGTGGTAAAGCCATCTC‑GCGCCGCTGAGATGgc < 1:382591/150‑1 (MQ=255) tGCATCATTGATGACCAGGCTGCGTGAACTGGAAGAGGAGAACCGTCGGCTCAAGAAGATGTACGCCGAGGAGCGCCTCAAGGCCGAG‑‑ATCATCCAGGAGGCCATGGCAAAAAAGTGGTAAAGCCATCTCAGCGGCGC‑GAGATGGCgcag > 2:2038429/1‑150 (MQ=255) tgatTGATGACCAGTCTGCGTGAACGGGAAGAGGAGAACCGTCGGCTCAAGAAGATGTACGCCGAGGAGCGCCTCAAGGCCGAG‑‑ATCATCCAGGAGGCCATGGCAAAAAAGTGGTAAAGCCATCTCAGCGGCGC‑GAGATGGCGCAGCAgg > 2:643649/3‑150 (MQ=255) tcatTGATGACCAGGCTGCGTGAACTGGAAGAGGAGAACCGTCGGCTCAAGAAGATGTACGCCGAGGAGCGCCTCAAGGCCGAG‑‑ATCATCCAGGAGGCCATGGCAAAAAAGTGGTAAAGCCATCTCAGCGGCGC‑GAGATGGCGCAGCAgg > 2:1679153/1‑150 (MQ=255) tcatTGATGACCAGGCTGCGTGAACTGGAAGAGGAGAACCGTCGGCTCAAGAAGATGTACGCCGAGGAGCGCCTCAAGGCCGAG‑‑ATCATCCAGGAGGCCATGGCAAAAAAGTGGTAAAGCCATCTCAGCGGCGC‑GAGATGGCGCAGCAgg < 1:2038429/150‑1 (MQ=255) catTGATGACCAGGCTGCGTGAACTGGAAGAGGAGAATCGTCGGCTCAAGAAGATGTACGCCGAGGAGCGCCTCAAGGCCGAG‑‑ATCATCCAGGAGGCCATGGCAAAAAAGTGGTAAAGCCATCTCAGCGGCGC‑GAGATGGCGCAGCAGGc > 2:539422/1‑150 (MQ=255) cAGGCTGCGTGACCTGGGAGAGGAGAACCGTCGGCTCAAGAAGATGTAAGCC‑‑GCAACGCTTTGGCGACAAGGCGTGAGCGCGGAGGGCGGGGCAAAACAGTGCTACAGCTACCTCAGCGGGGT‑GGGATGGCGCAGCAGGCGGTTCGTTCa < 1:1749802/150‑1 (MQ=255) cAGGCTGCGTGAACTGGAAGAGGAGAACCGTCGGCTCAAGAAGATGTACGCCGAGGAGCGCCTCAAGGCCGAG‑‑ATCATCCAGGAGGCCATGGCAAAAAAGTGGTAAAGCCATCTCAGCGGCGC‑GAGATGGCGCAGCAGGCGGTTCGTTCa > 2:2377574/1‑150 (MQ=255) cAGGCTGCGTGAACTGGAAGAGGAGAACCGTCGGCTCAAGAAGATGTACGCCGAGGAGCGCCTCAAGGCCGAG‑‑ATCATCCAGGAGGCCATGGCAAAAAAGTGGTAAAGCCATCTCAGCGGCGC‑GAGATGGCGCAGCAGGCGGTTCGTTCa < 1:1431879/150‑1 (MQ=255) cAGGCTGCGTGAACTGGAAGAGGAGAACCGTCCGCTCAAGAAGATGTACGCCGAGGAGCGCCTAAAGGCCGAG‑‑ATCATCCAGGAGGCCATGGCAAAAAAGTGGTAAAGCCATCTCAGCGGCGC‑GAGATGGCGCAGCAGGCGGTTCGTTCa < 1:1079718/150‑1 (MQ=255) gTGAACTTGAAGAGGAGAACCGTCGGCTCAAGAAGATGTACGCCGAGGAGCGCCTCAAGGCCGAG‑‑ATCATCCAGGAGGCCATGGCAAAAAAGTGGTAAAGCCATCTCAGCGGCGC‑GAGATGGCGCAGCAGGCGGTTCGTTCAGGCAAAGc < 2:475215/150‑1 (MQ=255) gTGAACTGGAAGAGGAGAACCGTCGGCTCAAGAAGATGTACGCCGAGGAGCGCCTCAAGGCCGAG‑‑ATCATCCAGGAGGCCATGGCAAAAAAGTGGTAAAGCCATCTCAGCGGCGC‑GAGATGGCGCAGCAGGCGGTTCGTTCAGGCAAAGc > 2:849327/1‑150 (MQ=255) gAACTGGAAGAGGAGAACCGTCGGCTCAAGAAGATGTACGCCGAGGAGCGCCTCAAGGCCGAG‑‑ATCATCCAGGAGGCCATGGCAAAAAAGTGGTAAAGCCATCTCAGCGGCGC‑GAGATGGCGCAGCAGGCGGTTCGTTCAGGCAAAGCCa < 2:1888503/150‑1 (MQ=255) aaCTGGAAGAGGAGAACCGTCGGCTCAAGAAGATGTACGCCGAGGAGCGCCTCAAGGCCGAG‑‑ATCATCCAGGAGGCCATGGCAAAAAAGTGGTAAAGCCATCTCAGCGGCGC‑GAGATGGCGCAGCAGGCGGTTCGTTCAGGCAAAGCCAg < 1:2377574/150‑1 (MQ=255) aatGGAAGAGGAGAACCGTCGGCTCAAGAAGATGTACGCCGAGGAGCGACTCAAGGCCGAG‑‑ATCATCCAGGAGGCCATGGCAAAAAAGTGGTAAAGCCATCTCAGCGGCGC‑GAGATGGCGCAGCAGGCGGTTCGTTCAGGCAAAGCCAGt < 2:549859/148‑1 (MQ=255) tGGAAGAGGAGAACCGTCGGCTCAAGAAGATGTACGCCGAGGAGCGCCTCAAGGCCGAG‑‑ATCATCCAGGAGGCCATGGCAAAAAAGTGGTAAAGCCATCTCAGCGGCGC‑GAGATGGCGCAGCAGGCGGTTCGTTCAGGCAAAGCCAGTAt > 1:2117700/1‑150 (MQ=255) tGGAAGAGGAGAACCGTCGGCTCAAGAAGATGTACGCCGAGGAGCGCCTCAAGGCCGAG‑‑ATCATCCAGGAGGCCATGGCAAAAAAGTGGTAAAGCCATCTC‑GCGCCGCTGAGATgg > 2:2270570/1‑116 (MQ=255) tGGAAGAGGAGAACCGTCGGCTCAAGAAGATGTACGCCGAGGAGCGCCTCAAGGCCGAG‑‑ATCATCCAGGAGGCCATGGCAAAAAAGTGGTAAAGCCATCTC‑GCGCCGCTGAGATgg > 2:1036742/1‑116 (MQ=255) tGGAAGAGGAGAACCGTCGGCTCAAGAAGATGTACGCCGAGGAGCGCCTCAAGGCCGAG‑‑ATCATCCAGGAGGCCATGGCAAAAAAGTGGTAAAGCCATCTC‑GCGCCGCTGAGATgg < 1:1036742/116‑1 (MQ=255) tGGAAGAGGAGAACCGTCGGCTCAAGAAGATGTACGCCGAGGAGCGCCTCAAGGCCGAG‑‑ATCATCCAGGAGGCCATGGCAAAAAAGTGGTAAAGCCATCTC‑GCGCCGCTGAGATgg < 1:2270570/116‑1 (MQ=255) ggAAGAGGAGAACCGTCGGCTCAAGAAGATGTACGCCGAGGAGCGCCTCAAGGCCGAG‑‑ATCATCCAGGAGGCCATGGCAAAAAAGTGGTAAAGCCATCTCAGCGGCGC‑GAGATGGCGCAGCAGGCGGTTCGTTCAGGCAAAGCCAGTATc < 2:2045467/150‑1 (MQ=255) gAAGAGGAGAACCGTCGGCTCAAGAAGATGTACGCCGAGGAGCGCCTCAAGGCCGAG‑‑ATCATCCAGGAGGCCATGGCAAAAAAGTGGTAAAGCCATCTCAGCGGCGC‑GAGATGGCGCAGCAGGCGGTTCGTTCAGGCAAAGCCAGTATCa > 1:2242936/1‑150 (MQ=255) aggagAACCGTCGGCTCAAGAAGATGTACGCCGAGGAGCGCCTCAAGGCCGAG‑‑ATCATCCAGGAGGCCATGGCAAAAAAGTGGTAAAGCCATCTCAGCGGCGC‑GAGATGGCGCAGCAGGCGGTTCGTTCAGGCAAAGCCAGTATCAAAtt > 1:965464/1‑150 (MQ=255) gagaACCGTCGGCTCAAGAAGATGTACGCCGAGGAGCGCCTCAATGCCGAG‑‑ATCAGCCAGGAGGCCATGGCAAAAAAGTGGTAAAGCCATCTCAGCGGCGC‑GAGATGGCGCAGCAGGCGGTTCGTTCAGGCAAAGCCAGTATCAAATTAg > 2:346353/1‑150 (MQ=255) agaACCGTCGGCTCAAGAAGATGTACGCCGAGGAGCGCCTCAAGGCCGAG‑‑ATCATCCAGGAGGCCATGGCAACAAACTGGTAAAGCCATCTCAGCGGCGC‑GAGATGGCGCAGCAGGCGGTTCGTTCAGGCAAAGCCAGTATCAAATTAGc < 2:467044/150‑1 (MQ=255) agaACCGTCGGCTCAAGAAGATGTACGCCGAGGAGCGCCTCAAGGCCGAG‑‑ATCATCCAGGAGGCCATGGCAAAAAAGTGGTAAAGCCATCTCAGCGGCGC‑GAGATGGCGCAGCAGGCGGTTCGTTCAGGCAAAGCCAGTATCAAATTAGc < 2:2242936/150‑1 (MQ=255) aaCCGTCGGCTCAAGAAGATGTACGCCGAGGAGCGCCTCAAGGCCGAG‑‑ATCATCCAGGAGGCCATGGCAAAAAAGTGGTAAAGCCATCTCAGCGGCGC‑GAGATGGCGCAGCAGGCGGTTCGTTCAGGCAAAGCCAGTATCAAATTAGCGt < 1:1471977/150‑1 (MQ=255) cGTCGGCTCAAGAAGATGTACGCCGAGGAGCGCCTCAAGGCCGAG‑‑ATCATCCAGGAGGCCATGGCAAAAAAGTGGTAAAGCCATCTCAGCGGCGC‑GAGATGGCGCAGCAGGCGGTTCGTTCAGGCAAAGCCAGTATCaa > 1:1394465/1‑139 (MQ=255) cGTCGGCTCAAGAAGATGTACGCCGAGGAGCGCCTCAAGGCCGAG‑‑ATCATCCAGGAGGCCATGGCAAAAAAGTGGTAAAGCCATCTCAGCGGCGC‑GAGATGGCGCAGCAGGCGGTTCGTTCAGGCAAAGCCAGTATCaa < 2:1394465/139‑1 (MQ=255) cGTCGGCTCAAGAAGATGTACGCCGAGGAGCGCCTCAAGGCCGAG‑‑ATCATCCAGGAGGCCATGGCAAAAAAGTGGTAAAGCCATCTCAGCGGCGC‑GAGATGGCGCAGCAGGCGGTTCGTTCAGGCAAAGCCAGTATCAAATTAGCGTGcc < 1:38044/150‑1 (MQ=255) tCAAGAAGATGTACGCCGAGGAGCGCCTCAAGGCCGAG‑‑ATCATCCAGGAGGCCATGGCAAAAAAGTGGTAAAGCCATCTCAGCGGCGC‑GAGATgg < 2:447293/95‑1 (MQ=255) tCAAGAAGATGTACGCCGAGGAGCGCCTCAAGGCCGAG‑‑ATCATCCAGGAGGCCATGGCAAAAAAGTGGTAAAGCCATCTCAGCGGCGC‑GAGATgg > 1:447293/1‑95 (MQ=255) tCAAGAAGATGTACGCCGAGGAGCGCCTCAAGGCCGAG‑‑ATCATCCAGGAGGCCATGGCAAAAAAGTGGTAAAGCCATCTCAGCGGCGC‑GAGATGGCGCAGCAGGCGGTTCGTTCAGGCAAAGCCAGTATCAAATTAGCGTGCCTGTCGtt > 2:2257098/1‑150 (MQ=255) tCAAGAAGATGTACGCCGAGGAGCGCCTCAAGGCCGAG‑‑ATCATCCAGGAGGCCATGGCAAAAAAGTGGTAAAGCCATCTCAGCGGCGC‑GAGATGGCGCAGCAGGCGGTTCGTTCAGGCAAAGCCAGTATCAAATTAGCGTGCCTGTCGtt > 1:417527/1‑150 (MQ=255) tCAAGAAGATGTACGCCGAGGAGCGCCTCAAGGCCGAG‑‑ATCATCCAGGAGGCCATGGCAAAAAAGTGGTAAAGCCATCTCAGCGGCGC‑GAGATGGCGCAGCAGGCGGTTCGTTCAGGCAAAGCCAGTATCAAATTAGCGTGCCTGTCGtt < 1:1587951/150‑1 (MQ=255) tCAAGAAGATGTACGCCGAGGAGCGCCTCAAGGCCGAG‑‑ATCATCCAGGAGGCCATGGCAAAAAAGTGGTAAAGCCATCTCAGCGGCGC‑GAGATGGCGCAGCAGGCGGTTCGTTCAGGCAAAGCCAGTATCAAATTAGCGTGCCTGTCGtt > 1:544267/1‑150 (MQ=255) aagaagATGTACGCCGAGGAGCGCCTCAAGGCCGAG‑‑ATCATCCAGGAGGCCATGGCAAAAAAGTGGTAAAGCCATCTCAGCGGCGC‑GAGATGGCGCAGCAGGCGGTTCGTTCAGGCAAAGCCAGTATCAAATTAGCGTGCCTGTCGTTTg < 1:2257098/150‑1 (MQ=255) agaagaTGTACGCCGAGGAGCGCCTCAAGGCCGAG‑‑ATCATCCAGGAGGCCATGGCAAAAAAGTGGTAAAGCCATCTCAGCGGCGC‑GAGATGGCGCAGCAGGCGGTTCGTTCAGGCAAAGCCAGTATCAAATTAGCGTGCCTGTCGTTTgg > 1:1656116/1‑150 (MQ=255) agaagaTGTACGCCGAGGAGCGCCTCAAGGCCGAG‑‑ATCATCCAGGAGGCCATGGCAAAAAAGTGGTAAAGCCATCTCAGCGGCGC‑GAGATGGCGCAGCAGGCGGTTCGTTCAGGCAAAGCCAGTATCAAATTAGCGTGCCTGTCGTTTgg < 1:539422/150‑1 (MQ=255) gaagaTGTACGCCGAGGAGCGCCTCAAGGCCGAG‑‑ATCATCCAGGAGGCCATGGCAAAAAAGTGGTAAAGCCATCTCAGCGGCGC‑GAGATGGCGCAGCAGGCGGTTCGTTCAGGCAAAGCCAGTATCAAATTAGCGTGCCTGTCGTTTGGt > 1:1047735/1‑150 (MQ=255) agaTGTACGCCGAGGAGCGCCTCAAGGCCGAG‑‑ATCATCCAGGAGGCCATGGCAAAAAAGTGGTAAAGCCATCTCAGCGGCGC‑GAGATGGCGCAGCAGGCGGTTCGTTCAGGCAAAGCCAGTATCAAATTAGCGTGCCTGTCGTTTGGTAt < 1:2221352/150‑1 (MQ=255) cGCCGAGGAGCGCCTCAAGGCCGAG‑‑ATCATCCAGGAGGCCATGGCAAAAAAGTGGTAAAGCCATCTCAGCGGGGC‑GAGATGGCGCAGCAGGCGGTTCGTTCAGGCAACGCCAGTATCAAATTAGCGTGCCTGTCGTTTGGTATCAGCACg > 1:1768700/1‑150 (MQ=255) gCCGAGGAGCGCCTCAAGGCCGAG‑‑ATCATCCAGGAGGCCATGGCAAAAAAGTGGTAAAGCCATCTCAGCGGCGC‑GAGATGGCGCAGCAGGCGGTTCGTTCAGGCAAAGCCAGTATCAAATTAGCGTGCCTGTCGTTTGGTATCAGCACGa < 2:1416067/150‑1 (MQ=255) aggagCGCCTCAAGGCCGAG‑‑ATCATCCAGGAGGCCATGGCAAAAAAGTGGTAAAGCCATCTCAGCGGCGC‑GAGATGGCGCAGCAGGCGGTTCGTTCAGGCAAAGCCAGTATCAAATTAGCGTGCCTGTCGTTTGGTATCAGCACGACTGa < 2:1656116/150‑1 (MQ=255) gcgcCTCAAGGCCGAG‑‑ATCATCCAGGAGGCCATGGCAAAAAAGTGGTAAAGCCATCTCAGCGGCGC‑GAGATGGCGCAGCAGGCGGTTCGTTCAGGCAAAGCCAGTATCAAATTAGCGTGCCTGTCGTTTGGTATCAGCACGACTGAAc < 2:1847564/148‑1 (MQ=255) gcgcCTCAAGGCCGAG‑‑ATCATCCAGGAGGCCATGGCAAAAAAGTGGTAAAGCCATCTCAGCGGCGC‑GAGATGGCGCAGCAGGCGGTTCGTTCAGGCAAAGCCAGTATCAAATTAGCGTGCCTGTCGTTTGGTATCAGCACGACTGAAc > 1:1847564/1‑148 (MQ=255) gcCTCAAGGCCGAG‑‑ATCATCCAGGAGGCCATGGCAAAAAAGTGGTAAAGCCATCTCAGCGGCGC‑GAGATGGCGCAGCAGGCGGTTCGTTCAGGCAAAGCCAGTATCAAATTAGCGTGCCTGTCGTTTGGTATCAGCACGACTGAACCGcc > 1:1009911/1‑150 (MQ=255) cTCAAGGCCGAG‑‑ATCATCCAGGAGGCCATGGCAAAAAAGTGGTAAAGCCATCTCAGCGGCGC‑GAGATGGCGCAGCAGGCGGTTCGTTCAGGCAAAGCCAGTATCAAATTAGCGTGCCTGTCGTTTGGTATCAGCACGACTGAACCGcccc > 2:1931269/1‑150 (MQ=255) gCCGAG‑‑ATCATCCAGGAGGCCATGGCAAAAAAGTGGTAAAGCCATCTCAGCGGCGC‑GAGATGGCGCAGCAGGCGGTTCGTTCAGGCAAAGCCAGTATCAAATTAGCGTGCCTGTCGTTTGGTATCa < 2:1997020/126‑1 (MQ=255) gCCGAG‑‑ATCATCCAGGAGGCCATGGCAAAAAAGTGGTAAAGCCATCTCAGCGGCGC‑GAGATGGCGCAGCAGGCGGTTCGTTCAGGCAAAGCCAGTATCAAATTAGCGTGCCTGTCGTTTGGTATCa > 1:1997020/1‑126 (MQ=255) gCCGAG‑‑ATCATCCAGGAGGCCATGGCAAAAAAGTGGTAAAGCCATCTCAGCGGCGC‑GAGATGGCGCAGCAGGCGGTTCGTTCAGGCAAAGCCAGTATCAAATTAGCGTGCCTGTCGTTTGGTATCAGCACGACTGAACCGCCCCGGGttt > 1:440075/1‑150 (MQ=255) atcatcCAGGAGGCCATGGCAAAAAAGTGGTAAAGCCATCTCAGCGGCGC‑GAGATGGCGCAGCAGGCGGTTCGTTCAGGCAAAGCCAGTATCAAATTAGCGTGCCTGTCGTTTGGTATCAGCACGACTGAACCGCCCCGGGTTTCGCGGa < 1:1931269/150‑1 (MQ=255) tcCAGGAGGCCATGGCAAAAAGGTGGTAAAGCCATCTCAGCGGCGC‑GAGATGGCGCAGCAGGCGGTTCGTTCAGGCAAAGCCAGTATCAAATTAGCGTGCCTGTCGTTTGGTATCAGCACGACTGAACCGCCCCGGGTTTCGCGGAGGCt > 1:2173732/1‑150 (MQ=255) ccAGGAGGCCATGGCAAAAAAGTGGTAAAGCCATCTCAGCGGCGC‑GAGATGGCGCAGCAGGCGGTTCGTTCAGGCAAAGCCAGTATCAAATTAGCGTGCCTGTCGTTTGGTATCAGCACGACTGAACCGCCCCGGGTTTCGCGGAGGCTc < 1:1417467/150‑1 (MQ=255) ggaggCCATGGCAAAAAAGTGGTAAAGCCATCTCAGCGGCGC‑GAGATGGCGCAGCAGGCGGTTCGTTCAGGCAAAGCCAGTATCAAATTAGCGTGCCTGTCGTTTGGTATCAGCACGACTGAACCGCCCCGGGTTTCGCGGAGGCTCCAc > 2:463701/1‑150 (MQ=255) ccATGGCAAAAAAGTGGTAAAGCCATCTCAGCGGCGC‑GAGATGGCGCAGCAGGCGGTTCGTTCAGGCAAAGCCAGTATCAAATTAGCGTGCCTGTCGTTTGGTATCAGCACGACTGAACCGCCCCGGGTTTCGCGGAGGCTCCACCCttt < 1:1679153/150‑1 (MQ=255) ccATGGCAAAAAAGTGGTAAAGCCATCTCAGCGGCGC‑GAGATGGCGCAGCAGGCGGTTCGTTCAGGCAAAGCCAGTATCAAATTAGCGTGCCTGTCGTTTGGTATCAGCACGACTGAACCGCCCCGGGTTTCGCGGAGGCTCCACCCttt < 2:1009911/150‑1 (MQ=255) cATGGCAAAAAAGTGGTAAAGCCATCTCAGCGGCGC‑GAGATGGCGCAGCAGGCGGTTCGTTCAGGCAAAGCCAGTATCAAATTAGCGTGCCTGTCGTTTGGTATCAGCACGACTGAACCGCCCCGGGTTTCGCGGAGGCTCCACCCTTTg > 1:2377259/1‑150 (MQ=255) aTGGCAAAAAAGTGGTAAAGCCATCTCAGCGGCGC‑GAGATGGCGCAGCAGGCGGTTCGTTCAGGCAAAGCCAGTATCAAATTAGCGTGCCTGTCGTTTGGTATCAGCACGACTGAACCGCCCCGGGTTTCGCGGAGGCTCCACCCTTTga < 1:463701/150‑1 (MQ=255) ggCAAAAAAGTGGTAAAGCCATCTCAGCGGCGC‑GAGATGGCGCAGCAGGCGGTTCGTTCAGGCAAAGCCAGTATCAAATTAGCGTGCCTGTCGTTTGGTATCAGCACGACTGAACCGCCCCGGGTTTCGCGGAGGCTCCACCCTTTgaga < 1:1294585/150‑1 (MQ=255) gCAAAAAAGTGGTAAAGCCATCTCAGCGGCGC‑GAGATGGCGCAGCAGGCGGTTCGTTCAGGCAAAGCCAGTATCAAATTAGCGTGCCTGTCGTTTGGTATCAGCACGACTGAACCGCCCCGGGTTTCGCGGAGGCTCCACCCTTTgagag < 2:544267/150‑1 (MQ=255) gCAAAAAAGTGGTAAAGCCATCTCAGCGAGGT‑GAGATGGCGCAGCAGGCGGTTCGTTCAGGCAAAGCCAGTATCAAATTAGCGTGCCTGTCGTTTGGTATCAGCACGACTGAACCGCCCCGGGTTTCGCGGAGGCTCCACCCTTTgagag > 1:442345/1‑150 (MQ=255) cAAAAAAGTGGTAAAGCCATCTCAGCGGCGC‑GAGATGGCGCAGCAGGCGGTTCGTTCAGGCAAAGCCAGTATCAAATTAGCGTGCCTGTCGTTTGGTATCAGCACGACTGAACCGCCCCGGGTTTCGCGGAGGCTCCACCCTTTgagaga > 1:1245699/1‑150 (MQ=255) aaaaaaGTGGTAAAGCCATCTCAGCGGCGC‑GAGATGGCGCAGCAGGCGGTTCGTTCAGGCAAAGCCAGTATCAAATTAGCGTGCCTGTCGTTTGGTATCAGCACGACTGAACCGCCCCggg < 2:2382641/121‑1 (MQ=255) aaaaaaGTGGTAAAGCCATCTCAGCGGCGC‑GAGATGGCGCAGCAGGCGGTTCGTTCAGGCAAAGCCAGTATCAAATTAGCGTGCCTGTCGTTTGGTATCAGCACGACTGAACCGCCCCggg > 1:2382641/1‑121 (MQ=255) aaaaaaGTGGTAAAGCCATCTCAGCGGCGC‑GAGATGGCGCAGCAGGCGGTTCGTTCAGGCAAAGCCAGTATCAAATTAGCGTGCCTGTCGTTTGGTATCAGCACGACTGAACCGCCCCGGGTTTCGCGGAGGCTCCACCCTTTGAGAGaa > 1:1206110/1‑150 (MQ=255) aaaaGTGGTAAAGCCATCTCAGCGGCGC‑GAGATGGCGCAGCAGGCGGTTCGTTCAGGCAAAGCCAGTATCAAATTAGCGTGCCTGTCGTTTGGTATCAGCACGACTGAACCGCCCCGGGTTTCGCGGAGGCTCCACCCTTTGAGAGAATg < 2:442345/150‑1 (MQ=255) aaGCCATCTCAGCGGCGC‑GAGATGGCGCAGCAGGCGGTTCGTTCAGGCAAAGCCAGTATCAAATTAGCGTGCCTGTCGTTTGGTATCAGCACGACTGAACCGCCCCGGGTTTCGCGGAGGCTCCACCCTTTGAGAGAATGGAGCCCatat > 2:9986/1‑150 (MQ=255) gCCATCTCAGCGGCGC‑GAGATGGCGCAGCAGGCGGTTCGTTCAGGCAAAGCCAGTATCAAATTAGCGTGCCTGTCGTTTGGTATCAGCACGACTGAACCGCCCCGGGTTTCGCGGAGGCTCCACCCTTTGAGAGAATGGAGCCCATATGa < 2:2117700/150‑1 (MQ=255) gCCATCTC‑GCGCCGCTGAGATGGCGCAGCAGGCGGTTCGTTCAGGCAAAGCCAGTATCAAATTAGCGTGCCTGTCGTTTGGTATCAGCACGACTGAACCGCCCCGGGTTTCGCGGAGGCTCCACCCTTTGAGAGaa > 2:2110335/1‑136 (MQ=255) gCCATCTC‑GCGCCGCTGAGATGGCGCAGCAGGCGGTTCGTTCAGGCAAAGCCAGTATCAAATTAGCGTGCCTGTCGTTTGGTATCAGCACGACTGAACCGCCCCGGGTTTCGCGGAGGCTCCACCCTTTGAGAGaa < 1:2110335/136‑1 (MQ=255) tctcAGCGGCGC‑GAGATGGCGCAGCAGGCGGTTCGTTCAGGCAAAGCCAGTATCAAATTAGCGTGCCTGTCGTTTGGTATCAGCACGACTGAACCGCCCCGGGTTTCGCGGAGGCTCCACCCTTTGAGAGAATGGAGCCCATATGagcaa > 2:1385828/1‑150 (MQ=255) | GCGGCATGGATGCATCATTGATGACCAGGCTGCGTGAACTGGAAGAGGAGAACCGTCGGCTCAAGAAGATGTACGCCGAGGAGCGCCTCAAGGCCGAG‑‑ATCATCCAGGAGGCCATGGCAAAAAAGTGGTAAAGCCATCTCAGCGGCGC‑GAGATGGCGCAGCAGGCGGTTCGTTCAGGCAAAGCCAGTATCAAATTAGCGTGCCTGTCGTTTGGTATCAGCACGACTGAACCGCCCCGGGTTTCGCGGAGGCTCCACCCTTTGAGAGAATGGAGCCCATATGAGCAA > NC_002947/3376338‑3376623 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |