| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 3,717,790:1 | +G | 5.4% | coding (52/1518 nt) | paaH ← | 3‑hydroxyacyl‑CoA dehydrogenase PaaC |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 3,717,790 | 1 | . | G | 5.4% | 382.4 / 13.9 | 92 | coding (52/1518 nt) | paaH | 3‑hydroxyacyl‑CoA dehydrogenase PaaC |
| Reads supporting (aligned to +/- strand): ref base . (44/43); new base G (2/3); total (46/46) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.26e-01 | |||||||||||
CAGCGGCCAGTAACTTTCCTTTGTCCACCAGCCGGGCCAGTTGGCGATCGATACCCGTCACCGCCTGGGCGGCAGCACCCGGGCGGTTATCGTAGAGCTTGACGGGGTGGCCGGCCTGGGCCGCGACCTGGGCGATACCGGCGCCCAT‑GGCGCCGGCACCGATCACCGCCACCTGCACATTGCTTGCGAGTGCGGCCATTTTCAGCGCCCCTTGAAGGCTGGCGTGCGTTTGTTCATGAAGGCGTTCACGCCTTCGCGGTAGTCCTCGCTGCGCCCTGCCAGGCGCTGCAGGTC > NC_002947/3717643‑3717936 | cAGCGGCCAGTAACTTTCCTTTGTCCACCAGCCGGGCCAGTTGGCGATCGATACCCGTCACCGCCTGGGCGGCAGCACCCGGGCGGTTATCGTAGAGCTTGACGGGGTGGCCGGCCTGGGCCGCGACCTGGGCGATACCGGCGCCCAT‑gg < 2:2281451/150‑1 (MQ=255)cAGCGGCCAGTAACTTTCCTTTGTCCACCAGCCGGGCCAGTTGGCGATCGATACCCGTCACCGCCTGGGCGGCAGCACCCGGGCGGTTATCGTAGAGCTTGACGGGGTGGCCGGCCTGGGCCGCGACCTGGGCGATACCGGCGCCCAT‑gg < 1:1139294/150‑1 (MQ=255) cGGCCAGTAACTTTCCTTTGTCCACCAGCCGGGCCAGTTGGCGATCGATACCCGTCACCGCCTGGGCGGCAGCACCCGGGCGGTTATCGTAGAGCTTGACGGGGTGGCCGGCCTGGGCCGCGACCTGGGCGATACCGGCGCCCAT‑Ggcgc < 2:2270442/150‑1 (MQ=255) cAGTAACTTTCCTTTGTCCACCAGCCGGGCCAGTTGGCGATCGATACCCGTCACCGCCTGGGCGGCAGCACCCGGGCGGTTATCGTAGAGCTTGACGGGGTGGCCGGCCTGGGCCGCGACCTGGGCGATACCGGCGCCCAT‑GGCGCCGGc > 1:222609/1‑150 (MQ=255) cAGTAACTTTCCTTTGTCCACCAGCCGGGCCAGTTGGCGATCGATACCCGTCACCGCCTGGGCGGCAGCACCCGGGCGGTTATCGTAGAGCTTGACGGGGTGGCCGGCCTGGGCCGCGACCTGGGCGATACCGGCGCCATG‑GGCGCCggt > 2:991125/1‑149 (MQ=255) aGTAACTTTCCTTTGTCCACCAGCCGGGCCAGTTGGCGATCGATACCCGTCACCGCCTGGGCGGCAGCACCCGGGCGGTTATCGTAGAGCTTGACGGGGTGGCCGGCCTGGGCCGCGACCTGGGCGATACCGGCG‑CCATGGGCGCCggta < 1:991125/150‑3 (MQ=255) aGTAACTTTCCTTTGTCCACCAGCCGGGCCAGTTGGCGATCGATACCCGTCACCGCCTGGGCGGCAGCACCCGGGCGGTTATCGTAGAGCTTGACGGGGTGGCCGGCCTGGGCCGCGACCTGGGCGATACCGGCG‑CCATGGGCGCCggta < 1:1717899/150‑3 (MQ=255) aGTAACTTTCCTTTGTCCACCAGCCGGGCCAGTTGGCGATCGATACCCGTCACCGCCTGGGCGGCAGCACCCGGGCGGTTATCGTAGAGCTTCATTGGGTGGCCGGCCTGGGCCGCGACCTGGGCGATACCGGCGCCCAT‑GGCGCCGGCa > 1:1834747/1‑150 (MQ=255) gTAACTTTCCTTTGTCCACCAGCCGGGCCAGTTGGCGATCGATACCCGTCACCGCCTGGGCGGCAGCACCCGGGCGGTTATCGTAGAGCTTGACGGGGTGGCCGGCCTGGGCCGCGACCTGGGCGATACCGGCGCCCAT‑GGCGCCGGCAc < 1:2085321/150‑1 (MQ=255) tAACTTTCCTTTGTCCACCAGCCGGGCCAGTTGGCGATCGAAACCCGTCACCGCCTGGGCGGCAGCACTCGGGTGGTTATCGTAGAGCTTGACGGGGTGGCCGGCCTGTGCCGCGACCTGGGCGATACCGGCGCCATG‑GGCGCCggtatc < 2:356496/150‑5 (MQ=255) cTTTCCTTTGTCCACCAGCCGGGCCAGTTGGCGATCGATACCCGTCACCGCCTGGGCGGCAGCACCCGGGCGGTTATTGTAGAGCTTGACGGGGTGGCCGGCCTGGGCCGCGACCTGGGCGATACCGGCGCCCAT‑GGCGCCGGCACCGAt > 2:1812063/1‑150 (MQ=255) cTTTGTCCACCAGCCGGGCCAGTTGGCGATCGATACCCGTCACCGCCTGGGCGGCAGCACCCGGGCGGTTATCGTAGAGCTTGACGGGGTGGCCGGCCTGGGCCGCGACCTGGGCGATACCGGCGCCCAT‑GGCGCCGGCACCGATCACCg > 2:1207865/1‑150 (MQ=255) cTTTGTCCACCAGCCGGGCCAGTTGGCGATCGATACCCGTCACCGCCTGGGCGGCAGCACCCGGGCGGTTATCGTAGAGCTTGACGGGGTGGCCGGCCTGGGCCGCGACCTGGGCGATACCGGCGCCCAT‑GGCGCCGGCACCGATCACCg > 1:1515475/1‑150 (MQ=255) tCCACCAGCCGGGCCAGTTGGCGATCGATACCCGTCACCGCCTGGGCGGCAGCACCCGGGCGGTTATCGTAGAGCTTGACGGGGTGGCCGGCCTGGGCCGCGACCTGGGCGATACCGGCGCCCAT‑GGCGCCGGCACCGATCACCGCCAcc > 2:2174161/1‑150 (MQ=255) tCCACCAGCCGGGCCAGTTGGCGATCGATACCCGTCACCGCCTGGGCGGCAGCACCCGGGCGGTTATCGTAGAGCTTGACGGGGTGGCCGGCCTGGGCCGCGACCTGGGCGATACCGGCGCCCAT‑GGCGCCGGCACCGATCACCGCCAcc > 1:1630102/1‑150 (MQ=255) caccaGCCGGGCCAGTTGGCGATCGATACCCGTCACCGCCTGGGCGGCAGCACCCGGGCGGTTATCGTAGAGCTTGACGGGGTGGCCGGCCTGGGCCGCGACCTGGGCGATACCGGCGCCCAT‑GGCGCCGGCACCGATCACCGCCACCTg > 1:40548/1‑150 (MQ=255) caccaGCCGGGCCAGTTGGCGATCGATACCCGTCACCGCCTGGGCGGCAGCACCCGGGCGGTTATCGTAGAGCTTGACGGGGTGGCCGGCCTGGGCCGCGACCTGGGCGATACCGGCGCCCAT‑GGCGCCGGCACCGATCACCGCCACCTg > 1:2338777/1‑150 (MQ=255) caccaGCCGGGCCAGTTGGCGATCGATACCCGTCACCGCCTGGGCGGCAGCACCCGGGCGGTTATCGTAGAGCTTGACGGGGTGGCCGGCCTGGGCCGCGACCTGGGCGATACCGGCGCCCAT‑GGCGCCGGCACCGATCACCGCCACCTg > 2:1788497/1‑150 (MQ=255) accaGCCGGGCCAGTTGGCGATCGATACCCGTCACCGCCTGGGCGGCAGCACCCGGGCGGTTATCGTAGAGCTTGACGGGGTGGCCGGCCTGGGCCGCGACCTGGGCGATACCGGCGCCCAT‑GGCGCCGGCACCGATCACCGCCACCTGc < 1:779281/150‑1 (MQ=255) ccGGGCCAGTTGGCGATCGATACCCGTCACCGCCTGGGCGGCAGCACCCGGGCGGTTATCGTAGAGCTTGACGGGGTGGCCGGCCTGGGCCGCGACCTGGGCGATACCGGCGCCCAT‑GGCGCCGGCACCGATCACCGCCACCTGCACAtt < 2:1450703/150‑1 (MQ=255) cAGTTGGCGATCGATACCCGTCACCGCCTGGGCGGCAGCACCCGGGCGGTTATCGTAGAGCTTGACGGGGTGGCCGGCCTGGGCCGCGACCTGGGCGATACCGGCGCCCAT‑GGCGCCGGCACCGATCACCGCCACCTGCACAttgcttgc < 2:1515475/150‑1 (MQ=255) gCGATCGATACCCGTCACCGCCTGGGCGGCAGCACCCGGGCGGTTATCGTAGAGCTTGACGGGGTGGCCGGCCTGGGCCGCGACCTGGGCGATACCGGCGCCCAT‑gg < 2:1441570/107‑1 (MQ=255) gCGATCGATACCCGTCACCGCCTGGGCGGCAGCACCCGGGCGGTTATCGTAGAGCTTGACGGGGTGGCCGGCCTGGGCCGCGACCTGGGCGATACCGGCGCCCAT‑gg > 1:1441570/1‑107 (MQ=255) gatcgatACCCGTCACCGCCTGGGCGGCAGCACCCGGGCGGTTATCGTAGAGCTTGACGGGGTGGCCGGCCTGGGCCGCGACCTGGGCGATACCGGCGCCCAT‑GGCGCCGGCACCGATCACCGCCACCTGCACATTGCTTGCGAGTGCgg > 1:191205/1‑150 (MQ=255) tcgatACCCGTCACCGCCTGGGCGGCAGCACCCGGGCGGTTATCGTAGAGCTTGACAGGGTGGACGGCCTGGGCCGCGTCCTGGGCGATACCGGCGCCCAT‑GGCGTCGTCACCGATCACCGCCACCTGCACATTGCTTGCGAGTGCGGcc < 2:881647/150‑1 (MQ=255) ccGTCACCGCCTGGGCGGCAGCACCCGGGCGGTTATCGTAGAGCTTGACGGGGTGGCCGGCCTGGGCCGCGACCTGGGCGATACCGGCGCCCAT‑GGCGCCGGCACCGATCACCGCCACCTGCACATTGCTTGCGAGTGCGGCCATTTTCa > 2:450698/1‑150 (MQ=255) ccGTCACCGCCTGGGCGGCAGCACCCGGGCGGTTATCGTAGAGCTTGACGGGGTGGCCGGCCTGGGCCGCGACCTGGGCGATACCGGCGCCCAT‑GGCGCCGGCACCGATCACCGCCACCTGCACATTGCTTGCGAGTGCGGCCATTTTCa > 1:543642/1‑150 (MQ=255) ccGTCACCGCCTGGGCGGCAGCACCCGGGCGGTTATCGTAGAGCTTGACGGGGTGGCCGGCCTGGGCCGCGACCGGGGCGATACCGGCGCACAT‑GGCGGCGAATATGTTTACCGCCACCTGCACATTGCTTGCGAGTGCGGCCATTTTCa > 1:1143024/1‑150 (MQ=255) cGTCACCGCCTGGGCGGCAGCACCCGGGCGGTTATCGTAGAGCTTGACGGGGTGGCCGGCCTGGGCCGCGACCTGGGCGATACCGGCGCCCAT‑GGCGCCGGCACCGATCACCGCCa < 1:1635087/116‑1 (MQ=255) cGTCACCGCCTGGGCGGCAGCACCCGGGCGGTTATCGTAGAGCTTGACGGGGTGGCCGGCCTGGGCCGCGACCTGGGCGATACCGGCGCCCAT‑GGCGCCGGCACCGATCACCGCCa > 2:1635087/1‑116 (MQ=255) gCCTGGGCGGCAGCACCCGGGCGGTTATCGTAGAGCTTGACGGGGTGGCCGGCCTGGGCCGCGACCTGGGCGATACCGGCGCCCAT‑GGCGCCGGCACCGATCACCGCCACCTGCACATTGCTTGCGAGTGCGGCCATTTTCAGCGCCCCt > 1:1399660/1‑150 (MQ=255) cTGGGCGGCAGCACCCGGGCGGTTATCGTAGAGCTTGACGGGGTGGCCGGCCTGGGCCGCGACCTGGGCGATACCGGCGCCCAT‑GGCGCCGGCACCGATCACCGCCACCTGCACATTGCTTGCGa > 2:744754/1‑125 (MQ=255) cTGGGCGGCAGCACCCGGGCGGTTATCGTAGAGCTTGACGGGGTGGCCGGCCTGGGCCGCGACCTGGGCGATACCGGCGCCCAT‑GGCGCCGGCACCGATCACCGCCACCTGCACATTGCTTGCGa < 1:744754/125‑1 (MQ=255) ggcggcAGCACCCGGGCGGTTATCGTAGAGCTTGACGGGGTGGCCGGCCTGGGCCGCGACCTGGGCGATACCGGCGCCCAT‑GGCGCCGGCACCGATCACCGCCACCTGCACATTGCTTGCGAGTGCGGCCATTTTCAGCGCCCCTTGAAg < 1:102019/150‑1 (MQ=255) ggcggcAGCAACAGAGCGGTTATCGTAGAGCTTGACGGGGTGGCCGGCCTGGGCCGCGACCTGGGCGATACCGGCGCCCAT‑GGCGCCGGCACCGATCACCGCCACCTGCACATTGCTTGCGAGTGCGGCCATTTTCAGCGCCCCTTGAAg < 1:497762/150‑1 (MQ=255) ggcAGCACCCGGGCGGTTATCGTAGAGCTTGACGGGGTGGCCGGCCTGGGCCGCGACCTGGGCGATACCGGCGCCCAT‑GGCGCCGGCACCGATCACCGCCACCTGCACATTGCTTGCGAGTGCGGCCATTTTCAGCGCCCCTTGAAGGCt > 1:341906/1‑150 (MQ=255) gcagcaCCCGAGCGGTTATCGTAGAGCTTGACGTGGTGTCCGGCCTGGGCCGCGACCTGGGCGATACCGGCGCCCAT‑GGCGCCGGCACCGATCACCGCCACCTGCACATTGCTTGCGAGTGCGGCCATTTTCAGCGCCCCTTGAAGGCTg < 1:607076/150‑1 (MQ=255) agcaCCCGGGCGGTTATCGTAGAGCTTGACGGGGTGGCCGGCCTGGGCCGCGACCTGGGCGATACCGGCGCCCAT‑GGCGCCGGCACCGATCACCGCCACCTGCACATTGCTTGCGAGTGCGGCCATTTTCAGCGCCCCTTGAAGGCTGgc < 1:1788497/150‑1 (MQ=255) gcaCCCGGGCGGTTATCGTAGAGCTTGACGGGGTGGCCGGCCTGGGCCGCGACCTGGGCGATACCGGCGCCCAT‑GGCGCCGGCACCGATCACCGCCACCTGCACATTGCTTGCGAGTGCGGCCATTTTCAGCGCCCCTTGAAGGCTGgcg > 1:689044/1‑150 (MQ=255) cccGGGCGGTTATTGTAGAGCTTGACGGGGTGGCCGGCCTGGGCCGCGACCTGGGCGATACCGGCGCCCAT‑GGCGCCGGCACCGATCACCGCCACCTGCACATTGCTTGCGAGTGCGGCCATTTTCAGCGCCCCTTGAAGGCTGgcgtgc < 1:1812063/150‑1 (MQ=255) gggCGGTTATCGTAGAGCTTGACGGGGTGGCCGGCCTGTGCCGCGACCTGGGCGATACCGGCGCCCAT‑GGCGCCGGCACCGCTCACCGCCAACTGAACGCTAATCGCAAGCGCTACGTTGTTCATTGCCCCTTTAATGCTTGCGTGCGtt < 2:1834747/150‑1 (MQ=255) gCGGTTATCGTAGAGCTTGACGGGGTGGCCGGCCTGGGCCGCGACCTGGGCGATACCGGCGCCCAT‑GGCGCCGGCACCGATCACCGCCACCTGCACATTGCTTGCGAGTGCGGCCATTTTCAGCGCCCCTTGAAGGCTGGCGTGCGTTTg < 2:543642/150‑1 (MQ=255) cGGTTATCGTAGAGCTTGACGGGGTGGCCGGCCTGGGCCGCGACCTGGGCGATACCGGCGCCCAT‑GGCGCCGGCACCGATCACCGCCACCTGCACATTGCTTGCGAGTGCGGCCATTTTCAGCGCCCCTTGAAGGCTGGCGTGCGTTTGt > 2:1889249/1‑150 (MQ=255) ggTTATCGTAGAGCTTGACGGGGTGGCCGGCCTGGGCCGCGACCTGGGCGATACCGGCGCCCAT‑GGCGCCGGCACCGATCACCGCCACCTGCACATTGCTTGCGAGTGCGGCCATTTTCAGCGCCCCTTGAAGGCTGGCTTGCGTTTGtt > 1:2298249/1‑150 (MQ=255) tATCGTAGAGCTTGACGGGTTGGCCGGCGTGGGCCGCGACCTGGGCGATACCGGCGCCCAT‑GGCGCCGGCACCGATCACCGCCACCTGCACATTGCTTGCGAGTGCGGCCATTTTCAGCGCCCCTTGAAGGCTGGCGTGCGTTTGTTCAt < 1:453002/150‑1 (MQ=255) tATCGTAGAGCTTGACGGGGTGGCCGGCCTGGGCCGCGACCTGGGCGATACCGGCGCCCAT‑GGCGCCGGCACCGATCACCGCCACCTGCACATTGCTTGCGAGTGCGGCCATTTTCAGCGCCCCTTGAAGGCTGGCGTGCGTTTGTTCAt < 2:2298249/150‑1 (MQ=255) gTAGAGCTTGACGGGGTGGCCGGCCTGGGCCGCGACCTGGGCGATACCGGCGCCCAT‑GGCGCCGGCACCGATCACCGCCACCTGCACATTGCTTGCGAGTGCGGCCAtt < 2:2306447/109‑1 (MQ=255) gTAGAGCTTGACGGGGTGGCCGGCCTGGGCCGCGACCTGGGCGATACCGGCGCCCAT‑GGCGCCGGCACCGATCACCGCCACCTGCACATTGCTTGCGAGTGCGGCCAtt > 1:2306447/1‑109 (MQ=255) gTAGAGCTTGACGGGGTGGCCGGCCTGGGCCGCGACCTGGGCGATACCGGCGCCCAT‑GGCGCCGGCACCGATCACCGCCACCTGCACATTGCTTGCGAGTGCGGCCATTTTCAGCGCCCCTTGAAGGCTGGCGTGCGTTTGTTCATGAAg > 2:1888416/1‑150 (MQ=255) gTAGAGCTTGACGGGGTGGCCGGCCTGGGCCGCGACCTGGGCGATACCGGCGCCCAT‑GGCGCCGGCACCGATCACCGCCACCTGCACATTGCTTGCGAGTGCGGCCATTTTCAGCGCCCCTTGAAGGCTGGCGTGCGTTTGTTCATGAAg < 1:2174161/150‑1 (MQ=255) gTAGAGCTTGACGGGGTGGCCGGCCTGGGCCGCGACCTGGGCGATACCGGCGCCCAT‑GGCGCCGGCACCGATCACCGCCACCTGCACATTGCTTGCGAGTGCGGCCATTTTCAGCGCCCCTTGAAGGCTGGCGTGCGTTTGTTCATGAAg < 1:1800098/150‑1 (MQ=255) tAGAGCTTGACGGGGTGGCCGGCCTGGGCCGCGACCTGGGCGATACCGGCGCCCAT‑GGCGCCGGCACCGATCACCGCCACCTGCACATTGCTTGCGAGTGCGGCCATTTTCAGCGCCCCTTGAAGGCTGGCGTGCGTTTGTTCATGaa < 1:1544231/148‑1 (MQ=255) tAGAGCTTGACGGGGTGGCCGGCCTGGGCCGCGACCTGGGCGATACCGGCGCCCAT‑GGCGCCGGCACCGATCACCGCCACCTGCACATTGCTTGCGAGTGCGGCCATTTTCAGCGCCCCTTGAAGGCTGGCGTGCGTTTGTTCATGaa > 2:1544231/1‑148 (MQ=255) tAGAGCTTGACGGGGTGGCCGGCCTGGGCCGCGACCTGGGCGATACCGGCGCCCAT‑GGCGCCGGCACCGATCACCGCCACCTGCACATTGCTTGCGAGTGCGGCCATTTTCAGCGCCCCTTGAAGGCTGGCGTGCGTTTGTTCATGAAgg > 1:1221359/1‑150 (MQ=255) tAGAGCTTGACGGGGTGGCCGGCCTGGGCCGCGACCTGGGCGATACCGGCGCCCAT‑GGCGCCGGCACCGATCACCGCCACCTGCACATTGCTTGCGAGTGCGGCCATTTTCAGCGCCCCTTGAAGGCTGGCGTGCGTTTGTTCATGAAgg > 1:920123/1‑150 (MQ=255) tGACGGGGTGGCCGGCCTGGGCCGCGACCTGGGCGATACCGGCGCCCAT‑GGCGCCGGCACCGATCACCGCCACCTGCACATTGCTTGCGAGTGCGGCCATTTTCAGCGCCCCTTGAAGGCTGGCGTGCGTTTGTTCATGAAGGCGTTCAc < 2:2338777/150‑1 (MQ=255) aCGGGGTGGCCGGCCTGGGCCGCGACCTGGGCGATACCGGCGCCCAT‑GGCGCCGGCACCGATCACCGCCACCTGCACATTGCTTGCGAGTGCGGCCATTTTCAGCGCCCCTTGAAGGCTGGCGTGCGTTTGTTCATGAAGGCGTTCACGc < 2:1350879/150‑1 (MQ=255) aCGGCGTGGCCGGCCTGGGCCGCGACCTGGGCGATACCGGCGCCCAT‑GGCGCCGGCACCGATCACCGCCACCTGCACATTGCTTGCGAGTGCGGCCATTTTCAGCGCCCCTTGAAGGCTGGCGTGCGTTTGTTCATGAAGGCGTTCACGc < 1:374295/150‑1 (MQ=255) ggTGGCCGGCCTGGGCCGCGACCTGGGCGATACCGGCGCCCAT‑GGCGCCGGCACCGATCACCGCCACCTGCACATTGCTTGCGAGTGCGGCCATTTTCAGCGCCCCTTGAAGGCTGGCGTGCGTTTGTTCATGAAGGCGTTCACGCCTTc > 2:433158/1‑150 (MQ=255) tGGCCGGCCTGGGCCGCGACCTGGGCGATACCGGCGCCCAT‑GGCGCCGGCACCGATCACCGCCACCTGCACATTGCTTGCGAGTGCGGCCATTTTCAGCGCCCCTTGAAGGCTGGCGTGCGTTTGTTCATGAAGGCGTTCACGCCTTcat < 2:222609/150‑3 (MQ=255) tGGCCGGCCTGGGCCGCGACCTGGGCGATACCGGCGCCCAT‑AGCGCCGGCACCGATCACCGCCACCTGCACATTGCTTGCGAGTGCGGCCATTTTCAGCGCCCCTTGAAGGCTGGCGTGCGTTTGTTCATGAAGGCGTGAACGCCTTcaa < 2:1650325/150‑3 (MQ=255) gccggccTGGGCCGCGACCTGGGCGATACCGGCGCCCAT‑GGCGCCGGCACCGATCACCGCCACCTGCACATTGCTTGCGAGTGCGGCCATTTTCAGCGCCCCTTGAAGGCTGGCGTGCGTTTGTTCATGAAGGCGTTCACGCCTTCGCgg < 1:1439977/150‑1 (MQ=255) cggccTGGGCCGCGACCTGGGCGATACCGGCGCCCAT‑GGCGCCGGCACCGATCACCGCCACCTGCACATTGCTTGCGAGTGCGGCCATTTTCAGCGCCCCTTGAAGGCTGGCGTGCGTTTGTTCATGAAGGCGTTCACGCCTTCGCGGTa < 1:224027/150‑1 (MQ=255) cggccTGGGCCGCGACCTGGGCGATACCGGCGCCCAT‑GGCGCCGGCACCGATCACCGCCACCTGCACATTGCTTGCGAGTGCGGCCATTTTCAGCGCCCCTTGAAGGCTGGCGTGCGTTTGTTCATGAAGGCGTTCACGCCTTCGCGGTa > 1:904526/1‑150 (MQ=255) cggccTGGGCCGCGACCTGGGCGATACCGGCGCCCAT‑GGCGCCGGCACCGATCACCGCCACCTGCACATTGCTTGCGAGTGCGGCCATTTTCAGCGCCCCTTGAAGGCTGGCGTGCGTTTGTTCATGAAGGCGTTCACGCCTTCGCGGTa > 2:224027/1‑150 (MQ=255) cggccTGGGCCGCGACCTGGGCGATACCGGCGCCCAT‑GGCGCCGGCACCGATCACCGCCACCTGCACATTGCTTGCGAGTGCGGCCATTTTCAGCGCCCCTTGAAGGCTGGCGTGCGTTTGTTCATGAAGGCGTTCACGCCTTCGCGGTa > 1:1898240/1‑150 (MQ=255) ggccTGGGCCGCGACCTGGGCGATACCGGCGCCCAT‑GGCGCCGGCACCGATCACCGCCACCTGCACATTGCTTGCGAGTGCGGCCATTTTCAGCGCCCCTTGAAGGCTGGCGTGCGTTTGTTCATGAAGGCGTTCACGCCTTCGCGGTAg > 1:1613274/1‑150 (MQ=255) ccTGGGCCGCGACCTGGGCGATACCGGCGCCCAT‑GGCGCCGGCACCGATCACCGCCACCTGCACATTGCTTGCGAGTGCGGCCATTTTCAGCGCCCCTTGAAGGCTGGCGTGCGTTTGTTCATGAAGGCGTTCACGCCTTCGCGGTAGTc < 2:341906/150‑1 (MQ=255) tGGGCCGCGACCTGGGCGATACCGGCGCCCAT‑GGCGCCGGCACCGATCACCGCCACCTGCACATTGCTTGCGAGTGCGGCCATTTTCAGCGCCCCtt > 2:301724/1‑97 (MQ=255) tGGGCCGCGACCTGGGCGATACCGGCGCCCAT‑GGCGCCGGCACCGATCACCGCCACCTGCACATTGCTTGCGAGTGCGGCCATTTTCAGCGCCCCtt < 1:301724/97‑1 (MQ=255) ggCCGCGACCTGGGCGATACCGGCGCCCAT‑GGCGCCGGCACCGATCACCGCCACCTGCACATTGCTTGCGAGTGCGGCCATTTTCAGCGCCCCTTGAAGGCTGGCGTGCGTTTGTTCATGAAGGc < 2:2327903/125‑1 (MQ=255) ggCCGCGACCTGGGCGATACCGGCGCCCAT‑GGCGCCGGCACCGATCACCGCCACCTGCACATTGCTTGCGAGTGCGGCCATTTTCAGCGCCCCTTGAAGGCTGGCGTGCGTTTGTTCATGAAGGc > 1:2327903/1‑125 (MQ=255) gCCGCGACCTGGGCGATACCGGCGCCCAT‑GGCGCCGGCACCGATCACCGCCACCTGCACATTGCTTGCGAGTGCGGCCATTTTCAGCGCCCCTTGAAGGCTGGCGTGCGTTTGTTCATGAAGGCGTTCACGCCTTCGCGGTAGTCCTCGc > 2:471758/1‑150 (MQ=255) gcgACCTGGGCGATACCGGCGCCCAT‑GGCGCCGGCACCGATCACCGCCACCTGCACATTGCTTGCGAGTGCGGCCATTTTCAGCGCCCCTTGAAGGCTGGCGTGCGTTTGTTCATGAAGGCGTTCACGCCTTCGCGGTAGTCCTCGCTgc < 2:1613274/150‑1 (MQ=255) gACCTGGGCGATACCGGCGCCCAT‑GGCGCCGGCACCGATCACCGCCACCTGCACATTGCTTGCGAGTGCGGCCATTTTCAGCGCCCCTTGAAGGCTGGCGTGCGTTTGTTCATGAAGGCGTTCACGCCTTCGCGGTAGTCCTCGCTgcgc < 2:904526/150‑1 (MQ=255) ccTGGGCGATACCGGCGCCCAT‑GGCGCCGGCACCGATCACCGCCACCTGCACATTGCTTGCGAGTGCGGCCATTTTCAGCGCCCCTTGAAGGCTGGCGTGCGTTTGTTCATGAAGGCGTTCACGCCTTCGCGGTAGTCCTCGCTGCGccc < 2:1630102/150‑1 (MQ=255) ccTGGGCGATACCGGCGCCCAT‑GGCGCCGGCACCGATCACCGCCACCTGCACATTGCTTGCGAGTGCGGCCATTTTCAGCGCCCCTTGAAGGCTGGCGTGCGTTTGTTCATGAAGGCGTTCACGCCTTCGCGGTAGTCCTCGCTGCGccc > 2:1578755/1‑150 (MQ=255) gggCGATACCGGCGCCCAT‑GGCGCCGGCACCGATCACCGCCACCTGCACATTGCTTGCGAGTGCGGc < 2:174684/67‑1 (MQ=255) gggCGATACCGGCGCCCAT‑GGCGCCGGCACCGATCACCGCCACCTGCACATTGCTTGCGAGTGCGGc > 1:174684/1‑67 (MQ=255) ggCGATACCGGCGCCCAT‑GGCGCCGGCACCGATCACCGCCACCTGCACATTGCTTGCGAGTGCGGCCATTTTCAGCGCCCCTTGAAGGCTGGCGTGCGTTTGTTCATGAAGGCGTTCACGCCTTCGCGGTAGTCCTCGCTGCGCCCTGcc > 1:1012992/1‑150 (MQ=255) gCGATACCGGCGCCCAT‑GGCGCCGGCACCGATCACCGCCACCTGCACATTGCTTGCGAGTGCGGCCATTTTCAGCGCCCCTTGAAGGCTGGCGTGCGTTTGTTCATGAAGGCGTTCACGCCTTCGCGGTAGTCCTCGCTGCGCCCTGCCa < 2:40548/150‑1 (MQ=255) cGATACCGGCGCCCAT‑GGCGCCGGCACCGATCACCGCCACCTGCACATTGCTTGCGAGTGCGGCCATTTTCAGCGCCCCTTGAAGGCTGGCGTGCGTTTGTTCATGAAGGCGTTCACGCCTTCGCGGTAGTCCTCGCTGCGCCCTGCCAg < 2:1012992/150‑1 (MQ=255) ggtgccGGCGCCCAT‑GGCGCCGGCACCGATCACCGCCACCTGCACATTGCTTGCGAGTGCGGCCATTTTCAGCGCCCCTTGAAGGCTGGCGTGCGTTTGTTCATGAAGGCGTTCACGCCTTCCCGGTAGTCTTGGCGGGGCCCTCCCAgg > 2:1344581/5‑150 (MQ=255) tgccGGCGCCATG‑GGCGCCGGTACCGATCACCGCCACCTGCACATTGCTTGCGa < 2:294282/52‑1 (MQ=21) tgccGGCG‑CCATGGGCGCCGGTACCGATCACCGCCACCTGCACATTGCTTGCGa > 1:294282/3‑54 (MQ=18) ccGGCGCCCAT‑GGCGCCGGCACCGATCACCGCCACCTGCACATTGCTTGCGAGTGCGGCCATTTTCAGCGCCCCTTGAAGGCTGGCGTGCGTTTGTTCATGAAGGCGTTCACGCCTTCGCGGTAGTCCTCGCTGCGCCCTGCCAGGCGCt > 1:2263145/1‑150 (MQ=255) ccGGCG‑CCATGGGCGCCGGCACCGATCACCGCCACCTGCACATTGCTTGCGAGTGCGGCCATTTTCAGCGCCCCTTGAAGGCTGGCGTGCGTTTGTTCATGAAGGCGTTCACGCCTTCGCGGTAGTCCTCGCTGCGCCCTGc < 2:575905/142‑1 (MQ=255) ccGGCG‑CCATGGGCGCCGGCACCGATCACCGCCACCTGCACATTGCTTGCGAGTGCGGCCATTTTCAGCGCCCCTTGAAGGCTGGCGTGCGTTTGTTCATGAAGGCGTTCACGCCTTCGCGGTAGTCCTCGCTGCGCCCTGc > 1:575905/1‑142 (MQ=255) cGGCGCCCAT‑GGCGCCGGCACCGATCACCGCCACCTGCACATTGCTTGCGAGTGCGGCCATTTTCAGCGCCCCTTGAAGGCTGGCGTGCGTTTGTTCATGAAGGCGTTCACGCCTTCGCGGTAGTCCTCGCTGCGCCCTGCCAGGCGCTg > 1:1318937/1‑150 (MQ=255) ggCGCCCAT‑GGCGCCGGCACCGATCACCGCCACCTGCACATTGCTTGCGAGTGCGGCCATTTTCAGCGCCCCTTGAAGGCTGGCGTGCGTTTGTTCATGAAGGCGTTCACGCCTTCGCGGTAGTCCTCGCTGCGCCCTGCCAGGCGCTGc < 2:1296095/150‑1 (MQ=255) gcCCAT‑TGCGCCGGCACCGATCACCGCCACCTGCACATTGCTTGCGAGTGCGGCCATTTTCAGCGCCCCTTGAAGGCTGGCGTGCGTTTGTTCATGAAGGCGTTc < 2:1095259/105‑1 (MQ=255) gcCCAT‑TGCGCCGGCACCGATCACCGCCACCTGCACATTGCTTGCGAGTGCGGCCATTTTCAGCGCCCCTTGAAGGCTGGCGTGCGTTTGTTCATGAAGGCGTTc > 1:1095259/1‑105 (MQ=255) gcCCAT‑GGCTCCGGCACCGATCACCGCCACCTGCACATTGCTTGCGAGTGCGGCCATTTTCAGCGCCCCTTGAAGGCTGGCGTGCGTTTGTTCATGAAGGCGTTCACGCCTTCGCGGTAGTCCTCGCTGCGCCCTGCCAGGCGCTGCAgg > 2:1502587/1‑150 (MQ=255) ccAT‑GGCGCCGGCACCGATCACCGCCACCTGCACATTGCTTGCGAGTGCGGCCATTTTCAGCGCCCCTTGAAGGCTGGCGTGCGTTTGTTCATGAAGGCGTTCACGCCTTCGCGGTAGTCCTCGCTGCGCCCTGCCAGGCGCTGCAGGTc < 1:1578755/150‑1 (MQ=255) ccAT‑GGCGCCGGCACCGATCACCGCCACCTGCACATTGCTTGCGAGTGCGGCCATTTTCAGCGCCCCTTGAAGGCTGGCGTGCGTTTGTTCATGAAGGCGTTCACGCCTTCGCGGTAGTCCTCGCTGCGCCCTGCCAGGCGCTGCAGGTc < 1:1207865/150‑1 (MQ=255) ccAT‑GGCGCCGGCACCGATCACCGCCACCTGCACATTGCTTGCGAGTGCGGCCATTTTCAGCGCCCCTTGAAGGCTGGCGTGCGTTTGTTCATGAAGGCGTTCACGCCTTCGCGGTAGTAGTAAGTGCGCCCTGCCAGGCGCTGCAGGTc > 1:1210815/1‑150 (MQ=255) | CAGCGGCCAGTAACTTTCCTTTGTCCACCAGCCGGGCCAGTTGGCGATCGATACCCGTCACCGCCTGGGCGGCAGCACCCGGGCGGTTATCGTAGAGCTTGACGGGGTGGCCGGCCTGGGCCGCGACCTGGGCGATACCGGCGCCCAT‑GGCGCCGGCACCGATCACCGCCACCTGCACATTGCTTGCGAGTGCGGCCATTTTCAGCGCCCCTTGAAGGCTGGCGTGCGTTTGTTCATGAAGGCGTTCACGCCTTCGCGGTAGTCCTCGCTGCGCCCTGCCAGGCGCTGCAGGTC > NC_002947/3717643‑3717936 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |