| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 3,876,566:1 | +A | 6.7% | coding (1014/1212 nt) | xcpS → | type II secretion pathway protein XcpS |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 3,876,566 | 1 | . | A | 6.7% | 356.6 / 18.6 | 90 | coding (1014/1212 nt) | xcpS | type II secretion pathway protein XcpS |
| Reads supporting (aligned to +/- strand): ref base . (33/51); new base A (3/3); total (36/54) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.80e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.66e-01 | |||||||||||
ACCGCCATGGGCATGGCCCGCGGCCTGCTCGGCAACGCAGCAGCGCAGGGCCTGGAGCAGGCCAGCCAGCGGGTGGGCGAAGGGCTGCCGCTTTCCGATGCTCTGGCGGCCGGGCACCTGGTGACGCCGGTATCCCTGCGCCTGCTGCGC‑GCAGGCGAGCAGTCTGGCAACCTGGGCGAGATGCTGGAGCGCTGCGCCGACTTCCATGACCAGGAAATCGGCCGTTGGGTGGAATGGTTCGTCAAACTGTTCGAACCGCTGCTGATGACCTTCATCGGCCTGCTGATCGGCCTGATC > NC_002947/3876417‑3876713 | aCCGCCATGGGCATGGCCCGCGGCCTGCTCGGCAACGCAGCAGCGCAGGGCCTGGAGCAGGCCAGCCAGCGGGTGGGCGAAGGGCTGCCGCTTTCCGATGCTCTGGCGGCCGGGCACCTGGTGACGCCGGTATCCCTGCGCCTGCTgcgc < 2:125942/150‑1 (MQ=255) gCCATGGGCATGGCCCGCGGCCTGCTCGGCAACGCAGCAGCGCAGGGCCTGGAGCAGGCCAGCCAGCGGGTGGGCGAAGGGCTGCCGCTTTCCGATGCTCTGGCGGCCGGGCACCTGGTGACGCCGGTATCCCTGCGCCTGCTGCGC‑GCa < 2:2402939/150‑1 (MQ=255) ccATGGGCATGGCCCGCGGCCTGCTCGGCGACGCAGCAGCGCAGGGCCTGGAGCAGGCCAGCCAGCGGGTGGGCGAAGGGCTGCCGCTTTCCGATGCTCTGGCGGCCGGGCACCTGGTGACGCCGGTATCCCTGCGCCTGCTGCGC‑GCAg > 1:1420797/1‑150 (MQ=255) ccATGGGCATGGCCCGCGGCCTGCTCGGCAACGCAGCAGCGCAGGGCCTGGAGCAGGCCAGCCAGCGGGTGGGCGAAGGGCTGCCGCTTTCCGATGCTCTGGCGGCCGGGCACCTGGTGACGCCGGTATCCCTGCGCCTGCTGCGC‑GCAg < 1:2010085/150‑1 (MQ=255) cATGGGCATGGCCCGCGGCCTGCTCGGCAACGCAGCAGCGCAGGGCCTGGAGCAGGCCAGCCAGCGGGTGGGCGAAGGGCTGCCGCTTTCCGATGCTCTGGCGGCCGGGCACCTGGTGACGCCGGTATCCCTGCGCCTGCTGCGC‑GCAgg < 2:923383/150‑1 (MQ=255) gggCATGGCCCGCGGCCTGCTCGGCAACGCAGCAGCGCAGGGCCTGGAGCAGGCCAGCCAGCGGGTGGGCGAAGGGCTGCCGCTTTCCGATGCTCTGGCGGCCGGGCACCTGGTGACGCCGGTATCCCTGCGCCTGCTGCGC‑GCa < 1:1169688/145‑1 (MQ=255) gggCATGGCCCGCGGCCTGCTCGGCAACGCAGCAGCGCAGGGCCTGGAGCAGGCCAGCCAGCGGGTGGGCGAAGGGCTGCCGCTTTCCGATGCTCTGGCGGCCGGGCACCTGGTGACGCCGGTATCCCTGCGCCTGCTGCGC‑GCa > 2:1169688/1‑145 (MQ=255) gggCATGGCCCGCGGCCTGCTCGGCAACGCAGCAGCGCAGGGCCTGGAGCAGGCCAGCCAGCGGGTGGGCGAAGGGCTGCCGCTTTCCGATGCTCTGGCGGCCGGGCACCTGGTGACGCCGGTATCCCTGCGCCTGCTGCGC‑GCAGGCGa < 2:1305633/150‑1 (MQ=255) gggCATGGCCCGCGGCCTGCTCGGCAAAGCAGCAGCGCAGGGCCTGGAGCAGGCCAGCCAGCGGGTGGGCGAAGGGCTACAGCTTTCCGATGCTCTGGTGGTCGCACACCCAGTGAGGCCGGTATCCCTGCGCCTGCTGCGC‑GCAGGCGa < 1:421411/150‑1 (MQ=255) ggCATGGTGCGCGGCCTGCTCGGCAACGCAGCAGCGCAGAGCCTGAAGCCGGTGACCCATGGGCGGTTCTAATGGCTGCCGCTTTCCGATGCTCTGGCGGCCGGGCACCTGGTGACGCCGGTATCCCTGCGCCTGC‑GCGCAGCAGGCgca < 1:891467/150‑3 (MQ=255) gCATGGCCCGCGGCCTGCTCGGCAACGCAGCAGCGCAGGGCCTGGAGCAGGCCAGCCAGCGGGTGGGCGAAGGGCTGCCGCTTTCCGATGCTCTGGCGGCCGGGCACCTGGTGACGCCGGTATCCCTGCGCCTGCTGCGC‑GCAGGCGAGc > 1:534895/1‑150 (MQ=255) cATGGCCCGCGGCCTGCTCGGCAACGCAGCAGCGCAGGGCCTGGAGCAGGCCAGCCAGCGGGTGGGCGAAGGGCTGCCGCTTTCCGATGCTCTGGCAGCCGGGCACCTGGTGACGCCGGTATCCCTGCGCCTGC‑GCGCAGCAGGCgcagg < 1:687297/150‑5 (MQ=255) gCCCGCGGCCTGCTCGGCAACGCAGCAGCGCAGGGCCTGGAGCAGGCCAGCCAGCGGGTGGGCGGAGTTAGCGCTCTTTCCGATGCTCTGGCGGCCGGGCACCTGGTGACGCCGGTATCCCTGCGCCTGCTGCGC‑GCAGGCGAGCAGTCt < 1:2222272/150‑1 (MQ=255) cccGCGGCCTGCTCGGCAACGCAGCAGCGCAGGGCCTGGAGCAGGCCAGCCAGCGGGTGGGCGAAGGGCTGCCGCTTTCCGATGCTCTGGCGGCCGGGCACCTGGTGACGCCGGTATCCCTGCGCCTGCTGCGC‑GCAGGCGAGCAGTCTg < 2:1752038/150‑1 (MQ=255) cccGCGGCCTGCTCGGCAACGCAGCAGCGCAGGGCCTGGAGCAGGCCAGCCAGCGGGTGGGCGAAGGGCTGCCGCTTTCCGATGCTCTGGCGGCCGGGCACCTGGTGACGCCGGTATCCCTGCGCCTGCTGCGC‑GCAGGCGAGCAGTCTg < 1:2073510/150‑1 (MQ=255) cccGCGGCCTGCTCGGCAACGCAGCAGCGCAGGGCCTGGAGCAGGCCAGCCAGCGGGTGGGCGAAGGGCTGCCGCTTTCCGATGCTCTGGCGGCCGGGCACCTGGTGACGCCGGTATCCCTGCGCCTGCTGCGC‑GCAGGCGAGCAGTCTg < 1:242424/150‑1 (MQ=255) ccGCGGCCTGCTCGGCAACGCAGCAGCGCAGGGCCTGGAGCAGGCCAGCCAGCGGGTGGGCGAAGGGCTGCCGCTTTCCGATGCTCTGGCGGCCGGGCACCTGGTGACGCCGGTATCCCTGCGCCTGCTGCGC‑GCAGGCGAGCAGTCTgg > 2:782242/1‑150 (MQ=255) cgcgGCCTGCTCGGCAACGCAGCAGCGCAGGGCCTGGAGCAGGCCAGCCAGCGGGTGGGCGAAGGGCTGCCGCTTTCCGATGCTCTGGCGGCCGGGCACCTGGTGACGCCGGTATCCCTGCGCCTGCTGCGC‑GCAGGCGAGCAGTCTGGc < 1:1511438/150‑1 (MQ=255) ggCCTGCTCGGCAACGCAGCAGCGCAGGGCCTGGAGCAGGCCAGCCAGCGGGTGGGCGAAGGGCTGCCGCTTTCCGATGCTCTGGCGGCCGGGCACCTGGTGACGCCGGTATCCCTGCGCCTACTGCGC‑GCAGGCGAGCAGTCTGGCAAc < 1:819818/150‑1 (MQ=255) ccTGCTCGGCAACGCAGCAGCGCAGGGCCTGGAGCAGGCCAGCCAGCGGGTGGGCGAAGGGCTGCCGCTTTCCGATGCTCTGGCGGCCGGGCACCTGGTGACGCCGGTATCCCTGCGCCTGCTGCGC‑GCAGGCGAGCAGTCTGGCAACCt > 1:473534/1‑150 (MQ=255) gCTCGGCAACGCAGCAGCGCAGGGCCTGGAGCAGGCCAGCCAGCGGGTGGGCGAAGGGCTGCCGCTTTCCGATGCTCTGGCGGCCGGGCACCTGGTGACGCCGGTATCCCTGCGCCTGCTGCGC‑GCAGGCGAGCa < 2:1109826/135‑1 (MQ=255) gCTCGGCAACGCAGCAGCGCAGGGCCTGGAGCAGGCCAGCCAGCGGGTGGGCGAAGGGCTGCCGCTTTCCGATGCTCTGGCGGCCGGGCACCTGGTGACGCCGGTATCCCTGCGCCTGCTGCGC‑GCAGGCGAGCa > 1:1109826/1‑135 (MQ=255) cTCGGCAACGCAGCAGCGCAGGGCCTGGAGCAGGCCAGCCAGCGGGTGGGCGAAGGGCTGCCGCTTTCCGATGCTCTGGCGGCCGGGCACCTGGTGACGCCGGTATCCCTGCGCCTGCTGCGC‑GCAGGCGAGCAGTCTGGCAACCTGGGc < 1:2315763/150‑1 (MQ=255) tCGGCAACGCAGCAGCGCAGGGCCTGGAGCAGGCCAGCCAGCGGGTGGGCGAAGGGCTGCCGCTTTCCGATGCTCTGGCGGCCGGGCACCTGGTGACGCCGGTATCCCTGCGCCTGCTGCGC‑GCAGGCGAGCAGTCTGGCAACCTGGGCg > 1:413405/1‑150 (MQ=255) gCAACGCAGCAGCGCAGGGCCTGGAGCAGGCCAGCCAGCGGGTGGGCGAAGGGCTGCCGCTTTCCGATGCTCTGGCGGCCGGGCACCTGGTGACGCCGGTATCCCTGCGCCTGCTGCGC‑GCAGGCGAGCAGTCTGGCAACCTGGGCgaga < 2:1142265/150‑1 (MQ=255) gCAACGCAGCAGCGCAGGGCCTGGAGCAGGCCAGCCAGCGGGTGGGCGAAGGGCTGCCGCTTTCCGATGCTCTGGCGGCCGGGCACCTGGTGACGCCGGTATCCCTGCGCCTGCTGCGC‑GCAGGCGAGCAGTCTGGCAACCTGGGCgaga < 1:491504/150‑1 (MQ=255) cGCAGCAGCGCAGGGCCTGGAGCAGGCCAGCCAGCGGGTGGGCGAAGGGCTGCCGCTTTCCGATGCTCTGGCGGCCGGGCACCTGGTGACGCCGGTATCCCTGCGCCTGCTGCGC‑GCAGGCGAGCAGTCTGGCAACCTGGGCGAGATGCt < 2:2110902/150‑1 (MQ=255) agcagcGCAGGGCCTGGAGCAGGCCAGCCAGCGGGTGGGCGAAGGGCTGCCGCTTTCCGATGCTCTGGCGGCCGGGCACCTGGTGACGCCGGTATCCCTGCGCCTGCTGCGC‑GCAGGCGAGCAGTCTGGCAACCTGGGCGAGATGCTGGa < 1:621426/150‑1 (MQ=255) gcagcGCAGGGCCTGGAGCAGGCCAGCCAGCGGGTGGGCGAAGGGCTGCCGCTTTCCGATGCTCTGGCGGCCGGGCACCTGGTGACGCCGGTATCCCTGCGCCTGC‑GCGCAGCAGGCgcag > 2:1271460/1‑118 (MQ=255) gcagcGCAGGGCCTGGAGCAGGCCAGCCAGCGGGTGGGCGAAGGGCTGCCGCTTTCCGATGCTCTGGCGGCCGGGCACCTGGTGACGCCGGTAGCCCTGCGCCTGC‑GCGCAGCAGGCgcag < 1:1271460/121‑4 (MQ=255) cagcGCAGGGCCTGGAGCAGGCCAGCCAGCGGGTGGGCGAAGGGCTGCCGCTTTCCGATGCTCTGGCGGCCGGGCACCTGGTGACGCCGGTATCCCTGCGCCTGCTGCGC‑GCAGGCGAGCAGTCTGGCAACCTGGGCGAGATGCTGGAgc < 2:413405/150‑1 (MQ=255) cgcAGGGCCTGGAGCAGGCCAGCCAGCGGGTGGGCGAAGGGCTGCCGCTTTCCGATGCTCTGGCGGCCGGGCACCTGGTGACGCCGGTATCCCTGCGCCTGCTGCGC‑GCAGGCGAGCAGTCTGGCAACCTGGGCGAGATGCTGGAGCGCt < 2:577389/150‑1 (MQ=255) gggCCTGGAGCAGGCCAGCCAGCGGGTGGGCGAAGGGCTGCCGCTTTCCGATGCTCTGGCCGCCGGCCACCTGGTCCCGCTTGTATCCCTGCTCCTGCTGCGC‑GCAGGCGAGCAGTCTGGCAACCTGGGCGAGATGCTGGAGCGCTgcgc < 1:2098129/150‑1 (MQ=255) ggCCTGGAGCAGGCCAGCCAGCGGGTGGGCGAAGGGCTGCCGCTTTCCGATGCTCTGGCGGCCGGGCACCTGGTGACGCCGGTATCCCTGCGCCTGCTGCGC‑GCAGGCGAGCAGTCTGGCAACCTGGGCGAGATGCTGGAGCGCTGCGcc < 1:647762/150‑1 (MQ=255) cAGGCCAGCCAGCGGGTGGGCGAAGGGCTGCCGCTTTCCGATGCTCTGGCGGCCGGGCACCTGGTGACGCCGGTATCCCTGCGCCTGCTGCGC‑GCAGGCGAGCAGTCTGGCAACCTGGGCGAGATGCTGGAGCGCTGCGCCGACTTCCAt < 2:2214105/150‑1 (MQ=255) cAGGCCAGCCAGCGGGTGGGCGAAGGGCTGCCGCTTTCCGATGCTCTGGCGGCCGGGCACCTGGTGACGCCGGTATCCCTGCGCCTGCTGCGC‑GCAGGCGAGCAGTCTGGCAACCTGGGCGAGATGCTGGAGCGCTGCGCCGACTTCCAt < 1:930810/150‑1 (MQ=255) gccagacaGCGGGTGGGCGAAGGGCTGCCGCTTTCCGATGCTCTGGCGGCCGGGCACCTGGTGACGCCGGTATCCCTGCGCCTGCTGCGC‑GCAGGCGAGCAGTCTGGCCGTGTTGGCGAGATGCTGGAGCGCTGCGCCGACTTCCATGAc > 1:1232188/1‑150 (MQ=255) cagccagcGGGTGGGCGAAGGGCTGCCGCTTTCCGATGCTCTGGCGGCCGGGCACCTGGTGACGCCGGTATCCCTGCGCCTGCTGCGC‑GCAGGCGAGCAGTCTGGCAACCTGGGCGAGATGCTGGAGCGCTGCGCCGACTTCCATGACCa < 2:148368/150‑1 (MQ=255) cagccagcGGGTGGGCGAAGGGCTGCCGCTTTCCGATGCTCTGGCGGCCGGGCACCTGGTGACGCCGGTATCCCTGCGCCTGCTGCGC‑GCAGGCGAGCAGTCTGGCAACCTGGGCGAGATGCTGGAGCGCTGCGCCGACTTCCATGACCa > 1:871585/1‑150 (MQ=255) cagccagcGGGTGGGCGAAGGGCTGCCGCTTTCCGATGCTCTGGCGGCCGGGCACCTGGTGACGCCGCTATCCCTGCGCCTGCTGCGC‑GCAGGCGAGCAGTCTGGCAACCTGGGCGAGATGCTGGAGCGCTGCGCCGACTTCCATGACCa < 2:197049/150‑1 (MQ=255) gTGGGCGAAGGGCTGCCGCTTTCCGATGCTCTGGCGGCCGGGCACCTGGTGACGCCGGTATCCCTGCGCCTGCTGCAA‑GCAGGCGAGCAGTCTGGCCACTGCTGCGATTTTCTGGAGCGCTGCGCCGACTTCCATGACCAGGAAATCGGc < 1:1023924/150‑1 (MQ=255) gCGAAGGGCTGCCGCTTTCCGATGCTCTGGCGGCCGGGCACCTGGTGACGCCGGTATCCCTGCGCCTGCTGCGC‑GCAGGCGAGCAGTCTGGCAACCTGGGCGAGATGCTGGAGCGCTGCGCCGACTTCCATGACCAGGAAATCGGCCGtt < 1:1560310/150‑1 (MQ=255) ggAAGGGCTGGGGCTTTCCGGTGCTCTGGCGGCCGGGCACCTGGTGACGCCGGTATCCCTGCGCCTGCTGCGC‑GCAGGCGAGCAGTCTGGCAACCTGGGCGAGATGCTGGAGCGCTGCGCCGACTTCCATGACCAGGAAATCGGCCGTTg > 2:2211150/2‑150 (MQ=255) cGAAGGGCTGCCGCTTTCCGATGCTCTGGCGGCCGGGCACCTGGTGACGCCGGTATCCCTGCGCCTGCTGCGC‑GCAGGCGAGCAGTCTGGCAACCTGGGCGAGATGCTGGAGCGCTGCGCCGACTTCCATGACCAGGAAATCGGCCGTTg < 1:231946/150‑1 (MQ=255) gAAGGGCTGCCGCTTTCCGATGCTCTGGCGGCCGGGCACCTGGTGACGCCGGTATCCCTGCGCCTGCTGCGC‑GCAGGCGAGCAGTCTGGCAACCTGGGCGAGATGCTGGAGCGCTGCGCCGACTTCCATGACCAGGAAATCGGCCGTTgg < 2:103798/150‑1 (MQ=255) gAAGGGCTGCCGCTTTCCGATGCTCTGGCGGCCGGGCACCTGGTGACGAAGGTATCCCTGCGCCTGCTGCGC‑GCAGGCGAGCAGTCTGGCAACCTGGGCGAGATGCTGGAGCGCTGCGCCGACTTCCATGACCAGGAAATCGGCCGGTgg > 2:336517/1‑150 (MQ=255) cTGCCGCTTTCCGATGCTCTGGCGGCCGGGCACCTGGTGACGCCGGTATCCCTGCGCCTGCTGCGC‑GCAGGCGAGCAGTc < 1:1155428/80‑1 (MQ=255) cTGCCGCTTTCCGATGCTCTGGCGGCCGGGCACCTGGTGACGCCGGTATCCCTGCGCCTGCTGCGC‑GCAGGCGAGCAGTc > 2:1155428/1‑80 (MQ=255) tGCCGCTTTCCGATGCTCTGGCGGCCGGGCACCTGGTGACGCCGGTATCCCTGCGCCTGCTGCGC‑GCAGGCGAGCAGTCTGGCAACCTGGGCGAGATGCTGGAGCGCTGCGCCGACTTCCATGACCAGGAAATCGGCCGTTGGGTGGAAt > 2:29548/1‑150 (MQ=255) gCCGCTTTCCGATGCTCTGGCGGCCGGGCACCTGGTGACGCCGGTATCCCTGCGCCTGCTGCGC‑GCAGGCGAGCAGTCTGGCAACCTGGGCgaga > 2:2115609/1‑95 (MQ=255) gCCGCTTTCCGATGCTCTGGCGGCCGGGCACCTGGTGACGCCGGTATCCCTGCGCCTGCTGCGC‑GCAGGCGAGCAGTCTGGCAACCTGGGCgaga < 1:2115609/95‑1 (MQ=255) gCCGCTTTCCGATGCTCTGGCGGCCGGGCACCTGGTGACGCCGGTATCCCTGCGCCTGCTGCGC‑GCAGGCGAGCAGTCTGGCAACCTGGGCGAGATGCTGGAGCGCTGCGCCGACTTCCATGACCAGGAAATCGGCCGTTGGGTGGAATg < 2:306755/150‑1 (MQ=255) cTTTCCGATGCTCTGGCGGCCGGGCACCTGGTGACGCCGGTATCCCTGCGCCTGCTGCGC‑GCAGGCGAGCAGTCTGGCAACCTGGGCGAGATGCTGGAGCGCTGCGCCGACTTCCATGACCAGGAAATCGGCCGTTGTGTGGAATGGTTc < 2:473534/150‑1 (MQ=255) cTTTCCGATGCTCTGGCGGCCGGGCACCTGGTGACGCCGGTATCCCTGCGCCTGCTGCGC‑GCAGGCGAGCAGTCTGGCAACCTGGGCGAGATGCTGGAGCGCTGCGCCGACTTCCATGACCAGGAAATCGGCCGTTGGGTGGAATGGTTc < 1:1677338/150‑1 (MQ=255) cGATGCTCTGGCGGCCGGGCACCTGGTGACGCCGGTATCCCTGCGCCTGCTGCGC‑GCAGGCGAGCAGTCTGGCAACCTGGGCGAGAt < 2:641786/87‑1 (MQ=255) cGATGCTCTGGCGGCCGGGCACCTGGTGACGCCGGTATCCCTGCGCCTGCTGCGC‑GCAGGCGAGCAGTCTGGCAACCTGGGCGAGAt > 1:641786/1‑87 (MQ=255) gtggCTCTGGCGGCCGGGCACCTGGTGACGCCGGTATCCCTGCGCCTGCTGCGC‑GCAGGCGAGCAGTCTGGCAACCTGGGCGAGATGCTGGAGCGCTGCGCCGACTTCCATGACCAGGAAATCGGCCGTTGGGTGGAATGGTTCGTCaaa > 2:2154568/4‑150 (MQ=255) gATGCTCTGGCGTCCGGGCACCTGGTGACGCCGGTATCCCTGCGCCTGCTGCGC‑GCAGGCGAGCAGTCTGGCAACCTGGGCGAGATGCTGGAGCGCTGCGCCGACTTCCATGACCAGGAAATCGGCCGTTGGGTGGAATGGTTCGTCaaa < 1:355927/150‑1 (MQ=255) gATGCTCTGGCGGCCGGGCACCTGGTGACGCCGGTATCCCTGCGCCTGCTGCGC‑GCAGGCGAGCAGTCTGGCAACCTGGGCGAGATGCTGGAGCGCTGCGCCGACTTCCATGACCAg > 2:1427135/1‑117 (MQ=255) gATGCTCTGGCGGCCGGGCACCTGGTGACGCCGGTATCCCTGCGCCTGCTGCGC‑GCAGGCGAGCAGTCTGGCAACCTGGGCGAGATGCTGGAGCGCTGCGCCGACTTCCATGACCAg < 1:1427135/117‑1 (MQ=255) gATGCTCTGGCGGCCGGGCACCTGGTGACGCCGGTATCCCTGCGCCTGCTGCGC‑GCAGGCGAGCAGTCTGGCAACCTGAGCGAGATGCTGGAGCGCTGCTCCGACTTCCATGACCAGTAAATCGGCCGGTGGTTGGAATGGTGCGTCaac > 2:508791/1‑149 (MQ=255) tctGGCGGCCGGGCACCTGGTGACGCCGGTATCCCTGCGCCTGCTGCGC‑GCAGGCGAGCAGTCTGGCAACCTGGGCGAGATGCTGGAGCGCTGCGCCGACTTCCATGACCAGGAAATCGGCCGTTGGGTGGAATGGTTCGTCAAACTGtt > 2:1283825/1‑150 (MQ=255) tctGGCGGCCGGGCACCTGGTGACGCCGGTATCCCTGCGCCTGCTGCGC‑GCAGGCGAGCAGTCTGGCAACCTGGGCGAGATGCTGGAGCGCTGCGCCGACTTCCATGACCAGGAAATCGGCCGTTGGGTGGAATGGTTCGTCAAACTGtt > 1:283392/1‑150 (MQ=255) ctGGCGGCCGGGCACCTGGTGACGCCGGTATCCCTGCGCCTGCTGCGC‑GCAGGCGAGCAGTCTGGCAACCTGGGCGAGATGCTGGAGCGCTGCGCCGACTTCCATGACCAGGAAATCGGCCGTTGGGTGGAATGGTTCGTCAAACTGTTc < 1:5325/150‑1 (MQ=255) cGGGCACCTGGTGACGCCGGTATCCCTGCGCCTGCTGCGC‑GCAGGCGAGCAGTCTGGCAACCTGGGCGAGATGCTGGAGCGCTGCGCCGACTTCCATGACCAGGAAATCGGCCGTTGGGTGGAATGGTTCGTCAAACTGTTCGAACCgct > 1:2031772/1‑150 (MQ=255) gggCACCTGGTGACGCCGGTATCCCTGCGCCTGCTGCGC‑GCAGGCGAGCAGTCTGGCAACCTGGGCGAGATGCTGGAGCGCTGCGCCGACTTCCATGACCAGGAAATCGGCCGTTGGGTGGAATGGTACGTCAACCTGTTCGAACCgctg > 2:1942444/1‑150 (MQ=255) ggCACCTGGTGACGCCGGTATCCCTGCGCCTGCTGCGC‑GCAGGCGAGCAGTCTGGCAACCTGGGCGAGATGCTGGAGCGCTGCGCCGACTTCCATGACCAGGAAATCGGCCGTTGGGTGGAATGGTTCGTCAAACTGTTCGAACCgctgc < 2:379688/150‑1 (MQ=255) ggCACCTGGTGACGCCGGTATCCCTGCGCCTGCTGCGC‑GCAGGCGAGCAGTCTGGCAACCTGGGCGAGATGCTGGAGCGCTGCGCCGACTTCCATGACCAGGAAATCGGCCGTTGGGTGGAATGGTTCGTCAAACTGTTCGAACCgctgc < 2:283392/150‑1 (MQ=255) gCACCTGGTGACGCCGGTATCCCTGCGCCTGCTGCGC‑GCAGGCGAGCAGTCTGGCAACCTGGGCGAGATGCTGGAGCGCTGCGCCGACTTCCATGACCAg < 1:645149/100‑1 (MQ=255) gCACCTGGTGACGCCGGTATCCCTGCGCCTGCTGCGC‑GCAGGCGAGCAGTCTGGCAACCTGGGCGAGATGCTGGAGCGCTGCGCCGACTTCCATGACCAg > 2:645149/1‑100 (MQ=255) aCCTGGTGACGCCGGTATCCCTGCGCCTGCTGCGC‑GCAGGCGAGCAGTCTGGCAACCTGGGCGAGATGCTGGAGCGCTGCGCCGACTTCCATGACCAGGAAATCGGCCGTTGGGTGGAATGGTTCGTCAAACTGTTCGAACCGCTGCtga < 1:2242889/150‑1 (MQ=255) aCCTGGTGACGCCGGTATCCCTGCGCCTGCTGCGC‑GCAGGCGAGCAGTCTGGCAACCTGGGCGAGATGCTGGAGCGCTGCGCCGACTTCCATGACCAGGAAATCGGCCGTTGGGTGGAATGGTTCGTCAAACTGTTCGAACCGCTGCtga > 2:2187692/1‑150 (MQ=255) aCCTGGTGACGCCGGTATCCCTGCGCCTGCTGCGC‑GCAGGCGAGCAGTCTGGCAACCTGGGCGAGATGCTGGAAAGCTGCGCCGACTTCCATAACAAGACCAGCGGGTTGAGGTTGGAGTGGTTCGTCAAACTGTTCGAACCGCTGCtga > 1:1142219/1‑150 (MQ=255) ccTGGTGACGCCGGTATCCCTGCGCCTGCTGCGC‑GCAGGCGAGCAGTCTGGCAACCTGGGCGAGATGCTGGAGCGCTGCGCCGACTTCCATGACCAGGAAATCGGCCGTTGGGTGGAATGGTTCGTCAAACTGTTCGAACCGCTGCtgat < 1:1336087/150‑1 (MQ=255) cTGGTGACGCCGGTATCCCTGCGCCTGCTGCGC‑GCAGGCGAGCAGTCTGGCAACCTGGGCGAGATGCTGGAGCGCTGCGCCGACTTCCATGACCAGGAAATCGGCCGTTGGGTGGAATGGTTCGTCAAACTGTTCGAACCGCTGCtgatg > 2:2217115/1‑150 (MQ=255) tGGTGACGCCGGTATCCCTGCGCCTGCTGCGC‑GCAGGCGAGCAGTCTGGCAACCTGGGCGAGATGCTGGAGCGCTGCGCCGACTTCCATGACCAGGAAATCGGCCGTTGGGTGGAATGGTTCGTCAAACTGTTCGAACCGCTGCtgatga < 1:1283825/150‑1 (MQ=255) ggTGACGCCGGTATCCCTGCGCCTGCTGCGC‑GCAGGCGAGCAGTCTGGCAACCTGGGCGAGATGCTGGAGCGCTGCGCCGACTTCCATGACCAGGAAATCGGCCGTTGGGTGGAATGGTTCGTCAAACTGTTCGAACCGCTGCTGATGAc < 1:940635/150‑1 (MQ=255) aCGCCGGTATCCCTGCGCCTGCTGCGC‑GCAGGCGAGCAGTCTGGCAACCTGGGCGAGATGCTGGAGCGCTGCGCCGACTTCCATGACCAGGAAATCGGCCGTTGGGTGGAATGGTTCGTCAAACTGTTCGAACCGGTGCTGATGACCTTc > 2:1029580/1‑150 (MQ=255) cGGTATCCCTGCGCCTGCTGCGC‑GCAGGCGAGCAGTCTGGCAACCTGGGCGAGATGCTGGAGCGCTGCGCCGACTTCCATGACCAGGAAATCGGCCGTTGGGTGGAATGGTTCGTCAAACTGTTc < 1:28249/125‑1 (MQ=255) cGGTATCCCTGCGCCTGCTGCGC‑GCAGGCGAGCAGTCTGGCAACCTGGGCGAGATGCTGGAGCGCTGCGCCGACTTCCATGACCAGGAAATCGGCCGTTGGGTGGAATGGTTCGTCAAACTGTTc > 2:28249/1‑125 (MQ=255) gTATCCCTGGGCCTTTTTCTC‑TCAGGCAAGCAGTCTGGCAACCTGGGCGAGATGCTGGAGCGCTGCGCAGACTTCCATGACCAGGAAATCGGCCGTTGGGTGGAATGGTTCGTCAAACTGTTCGAACCGCTGCTGATGACCTTCATCGGc < 1:152380/150‑1 (MQ=255) tCCCTGCGCCTGCTGCGC‑GCAGGCGAGCAGTCTGGCAACCTGGGCGAGATGCTGGAGCGCTGCGCCGAc < 1:2383218/69‑1 (MQ=255) tCCCTGCGCCTGCTGCGC‑GCAGGCGAGCAGTCTGGCAACCTGGGCGAGATGCTGGAGCGCTGCGCCGAc > 2:2383218/1‑69 (MQ=255) cccTGCGCCTGCTGCGC‑GCAGGCGAGCAGTCTGGCAACCTGGGCGAGATGCTGGAGCGCTGCGCCGACTTCCATGACCAGGAAATCGGCCGTTGGGTGGAATGGTTCGTCAAACTGTTCGAACCGCTGCTGATGACCTTCATCGGCctgc > 2:1406123/1‑150 (MQ=255) gctcgcCTGC‑GCGCAGCAGGCGAGCAGTCTGGCAACCTGGGCGAGATGCTGGAGCGCTGCGCCGACTTCCATGACCAGGAAATCGGCCGTTGGGTGGAATGGTTCGTCAAACTGTTCGAACCGCTGCTGATGACCTTCATCGGCctgctg > 2:1632149/4‑150 (MQ=255) tcgcCTGC‑GCGCAGCAGGCGAGCAGTCTGGCAACCTGGGCGAGATGCTGGAGCGCTGCGCCGACTTCCATGACCAGGAAATCGGCCGTTGGGTGGAATGGTTCGTCAAACTGTTCGAACCGCTGCTGATGACCTTCATCGGCCTGCTGAt > 1:1902939/2‑150 (MQ=255) ccTGCTGCGC‑GCAGGCGAGCAGTCTGGCAACCTGGGCGAGATGCTGGAGCGCTGCGCCGACTTCCATGACCAGGAAATCGGCCGTTGGGTGGAATGGTTCGTCAAACTGTTCGAACCGCTGCTGATGTCCtgg > 1:1204472/1‑131 (MQ=255) ccTGCTGCGC‑GCAGGCGAGCAGTCTGGCAACCTGGGCGAGATGCTGGAGCGCTGCGCCGACTTCCATGACCAGGAAATCGGCCGTTGGGTGGAATGGTTCGTCAAACTGTTCGAACCGCTGCTGATGTCCtgg < 2:1204472/133‑3 (MQ=255) ctgctgCGC‑GCAGGCGAGCAGTCTGGCAACCTGGGCGAGATGCTGGAGCGCTGCGCCGACTTCCATGACCAGGAAATCGGCCGTTGGGTGGAATGGTTCGTCAAACTGTTCGAACCGCTGCTGATGACCTTCATCGGCCTGCTGATCGGc > 2:536071/1‑150 (MQ=255) ctgctgCGC‑GCAGGCGAGCAGTCTGGCAACCTGGGCGAGATGCTGGAGCGCTGCGCCGACTTCCATGACCAGGAAATCGGCCGTTGGGTGGAATGGTTCGTCAAACTGTTCGAACCGCTGCTGATGACCTTCATCGGCCTGCTGATCGGc < 1:2217115/150‑1 (MQ=255) gctgcGC‑GCAGGCGAGCAGTCTGGCAACCTGGGCGAGATGCTGGAGCGCTGCGCCGACTTCCATGACCAGGAAATCGGCCGTTGGGTGGAATGGTTCGTCAAACTGTTCGAACCGCTGCTGATGACCTTCATCGGCCTGCTGATCGGCCt > 2:1820653/1‑150 (MQ=255) cgc‑gcAGGCCCGCAGTCTGGCAACCTGGGCGAGATGCTGGAGCGCTGCGCAGATATCCATGTCAGTTTAGTCGGCCATAGGGCGGAATGGTTCGTCAAACTGTTCGAACCGCTGCTGATGACCTTCATCGGCCTGCTGATCGGCCTGATc < 1:782242/150‑1 (MQ=255) | ACCGCCATGGGCATGGCCCGCGGCCTGCTCGGCAACGCAGCAGCGCAGGGCCTGGAGCAGGCCAGCCAGCGGGTGGGCGAAGGGCTGCCGCTTTCCGATGCTCTGGCGGCCGGGCACCTGGTGACGCCGGTATCCCTGCGCCTGCTGCGC‑GCAGGCGAGCAGTCTGGCAACCTGGGCGAGATGCTGGAGCGCTGCGCCGACTTCCATGACCAGGAAATCGGCCGTTGGGTGGAATGGTTCGTCAAACTGTTCGAACCGCTGCTGATGACCTTCATCGGCCTGCTGATCGGCCTGATC > NC_002947/3876417‑3876713 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |