| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 4,416,131:1 | +G | 8.1% | intergenic (+29/+90) | PP_3901 → / ← PP_3902 | hypothetical protein/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 4,416,131 | 1 | . | G | 8.1% | 480.8 / 33.9 | 123 | intergenic (+29/+90) | PP_3901/PP_3902 | hypothetical protein/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base . (58/55); new base G (4/6); total (62/61) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.30e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.73e-01 | |||||||||||
Only 100 of 124 total aligned reads displayed.
GAATCCCAGGAAGACTGGGGCGCGCTCGTCGAGGCCATGGAAGGCACCGAGGGCGTAAGCCTGGCCTTTGAAGATGATGGCGGCGTTCGTGTGACCTGGGAAAAGCCGCTAGAAGACTGATTTCGACAAACCCACCTTGC‑CCGCCTCGA‑GCGGGCTTTTTTTGCGCCATAGAAAAGTGAATTATGGGTACCACCATAACATTTATGAGCAAACCCATTGACACAAAATATGAGCATACTCATACTCGCTCCATCACCGGATAGACACCGGCCAGCAACAAAGGCAGCGAAAGTCG > NC_002947/4415983‑4416277 | tCCCAGGAAGACTGGGGCGCGCTCGTCGAGGCCATGGCAGGCACCGAGGGCGTAAGCCTGGCCTTTGAAGATGATGGCGGCGTTCGTGTGACCTGGGAAAAGCCGCTAGAAGACTGATTTCGACAAACCCACCTTGC‑CCGCCTCGA‑GCgg > 2:360375/1‑150 (MQ=255) tCCCAGGAAGACTGGGGCGCGCTCGTCGAGGCCATGGAAGGCACCGAGGGCGTAAGCCTGGCCTTTGAAGATGATGGCGGCGTTCGTGTGACCTGGGAAAAGCCGCTAGAAGACTGATTTCGACAAACCCACCTTGC‑CCGCCTCGA‑GCgg < 1:793465/150‑1 (MQ=255) ccAGGAAGACTGGGGCGCGCTCGTCGAGGCCATGGAAGGCACCGAGGGCGTAAGCCTGGCCTTTGAAGATGATGGCGGCGTTCGTGTGACCTGGGAAAAGCCGCTAGAAGACTGATTTCGACAAACCCACCTTGC‑CCGCCTCGA‑GCGGGc > 2:910304/1‑150 (MQ=255) ccAGGAAGACTGGGGCGCGCTCGTCGAGGCCATGGAAGGCACCGAGGGCGTAAGCCTGGCCTTTGAAGATGATGGCGGCGTTCGTGTGACCTGGGAAAAGCCGCTAGAAGACTGATTTCGACAAACCCACCTTGC‑CCGCCTCGA‑GCGGGc > 1:1535266/1‑150 (MQ=255) aGGAAGACTGGGGCGCGCTCGTCGAGGCCATGGAAGGCACCGAGGGCGTAAGCCTGGCCTTTGAAGATGATGGCGGCGTTCGTGTGACCTGGGAAAAGCCGCTAGAAGACTGATTTCGACAAACCCACCTTGC‑CCG‑CTCGAGGCGGGcaa < 2:1506712/150‑3 (MQ=255) aGGAAGACTGGGGCGCGCTCGTCGAGGCCATGGAAGGCACCGAGGGCGTAAGCCTGGCCTTTGAAGATGATGGCGGCGTTCGTGTGACCTGGGAAAAGCCGCTAGAAGACTGATTTCGACAAACCCACCTTGC‑CCG‑CTCGAGGCGGGcaa < 2:157067/150‑3 (MQ=255) aaGACTGGGGCGCGCTCGTCGAGGCCATGGAAGGCACCGAGGGCGTAAGCCTGGCCTTTGAAGATGATGGCGGCGTTCGTGTGACCTGGGAAAAGCCGCTAGAAGACTGATTTCGACAAACCCACCTTGC‑CCG‑CTCGAGGCGGGcaaggt < 1:1650504/150‑6 (MQ=255) aCTGGGGCGCGCTCGTCGAGGCCATGGAAGGCACCGAGGGCGTAAGCCTGGCCTTTGAAGATGATGGCGGCGTTCGTGTGACCTGGGAAAAGCCGCTAGAAGACTGATTTCGACAAACCCACCTTGC‑CCGCCTCGA‑GCg > 2:2179500/1‑139 (MQ=255) aCTGGGGCGCGCTCGTCGAGGCCATGGAAGGCACCGAGGGCGTAAGCCTGGCCTTTGAAGATGATGGCGGCGTTCGTGTGACCTGGGAAAAGCCGCTAGAAGACTGATTTCGACAAACCCACCTTGC‑CCGCCTCGA‑GCg < 1:2179500/139‑1 (MQ=255) ggggCGCGCTCGTCGAGGCCATGGAAGGCACCGAGGGCGTAAGCCTGGCCTTTGAAGATGATGGCGGCGTTCGTGTGACCTGGGAAAAGCCGCTAGCTGGCAGATTTCGACAAACCCACCTTGC‑CCGCCTCGA‑GCGGGCTTTTTTTgcgc < 1:910304/150‑1 (MQ=255) gggCGCGCTCGTCGAGGCCATGGAAGGCACCGAGGGCGTAAGCCTGGCCTTGGAAGATGATGGCGGCGTTCGTGTGACCTGGGAAAAGCCGCTAGAAGACTGATTTCGACAAACCCACCTTGC‑CCGCCTCGA‑GCGGGCTTTTTTTGCGcc > 2:157542/1‑150 (MQ=255) gcTCGTCGAGGCCATGGAAGGCACCGAGGGCGTAAGCCTGGCCTTTGAAGACGATGGCGGCGTTCGTGTGACCTGGGAAAAGCCGCTAGAAGACTGATTTCGACAAACCCACCTTGC‑CCGCCTCGA‑GCGGGCTTTTTTTGCGCCATAGaa > 1:2140500/1‑150 (MQ=255) tcgtcgAGGCCATGGAAGGCACCGAGGGCGTAAGCCTGGCCTTTGAAGATGATGGCGGCGTTCGTGTGACCTGGGAAAAGCCGCTAGAAGACTGATTTCGACAAACCCACCTTGC‑CCGCCTCGA‑GCGGGCTTTTTTTGCGCCATAGaaaa < 1:1762597/150‑1 (MQ=255) tcgtcgAGGCCATGGAAGGCACCGAGGGCGTAAGCCTGGCCTTTGAAGATGATGGCGGCGTTCGTGTGACCTGGGAAAAGCCGCTAGAAGACTGATTTCGACAAACCCACCTTGC‑CCG‑CTCGAGGCGGGcaa < 2:876564/132‑3 (MQ=255) gtcgAGGCCATGGAAGGCACCGAGGGCGTAAGCCTGGCCTTTGAAGATGATGGCGGCGTTCGTGTGACCTGGGAAAAGCCGCTAGAAGACTGATTTCGACAAACCCACCTTGC‑CCGCCTCGA‑GCGGGCTTTTTTTGCGCCATAGAAAAGt < 1:1135718/150‑1 (MQ=255) tcgAGGCCATGGAAGGCACCGAGGGCGTAAGCCTGGCCTTTGAAGATGATGGCGGCGTTCGTGTGACCTGGGAAAAGCCGCTAGAAGACTGATTTCGACAAACCCACCTTGC‑CCGCCTCGA‑GCGGGCTTTTTTTGCGCCATAGAAAAGTg > 1:2048821/1‑150 (MQ=255) ggAGGCCATGGAAGGCACCGAGGGCGTAAGCCTGGCCTTTGAAGATGATGGCGGCGTTCGTGTGACCTGGGAAAAGCCGCTAGAAGACTGATTTCGACAAACCCACCTTGC‑CCGCCTCGA‑GCGGGCTTTTTTCGCGCCATAGAAAAGTGa > 2:1657035/2‑150 (MQ=255) cATGGAAGGCACCGAGGGCGTAAGCCTGGCCTTTGAAGATGATGGCGGCGTTCGTGTGACCTGGGAAAAGCCGCTAGAAGACTGATTTCGACAAACCCACCTTGC‑CCGCCTCGA‑GCGGGCTTTTTTTGCGCCATAGAAAAGTGAATTATg > 2:1688014/1‑150 (MQ=255) cATGGAAGGCACCGAGGGCGTAAGCCTGGCCTTTGAAGATGATGGCGGCGTTCGTGTGACCTGGGAAAAGCCGCTAGAAGACTGATTTCGACAAACCCACCTTGC‑CCGCCTCGA‑GCGGGCTTTTTTTGCGCCATAGAAAAGTGAATTATg < 2:102905/150‑1 (MQ=255) aTGGAAGGCACCGAGGGCGTAAGCCTGGCCTTTGAAGATGATGGCGGCGTTCGTGTGACCTGGGAAAAGCCGCTAGAAGACTGATTTCGACAAACCCACCTTGC‑CCGCCTCGA‑GCGGGCTTTTTTTGCGCCATATAAAAGTGAATTATgg < 2:1015228/150‑1 (MQ=255) aTGGAAGGCACCGAGGGCGTAAGCCTGGCCTTTGAAGATGATGGCGGCGTTCGTGTGACCTGGGAAAAGCCGCTAGAAGACTGATTTCGACAAACCCACCTTGC‑CCGCCTCGA‑GCGGGCTTTTTTTGCGCCATAGAAAAGTGAATTATgg > 2:542325/1‑150 (MQ=255) aTGGAAGGCACCGAGGGCGTAAGCCTGGCCTTTGAAGACGATGGCGGCGTTCGTGTGACCTGGGAAAAGCCGCTAGAAGACTGATTTCGACAAACCCACCTTGC‑CCGCCTCGA‑GCGGGCTTTTTTTGCGCCATAGAAAAGTGAATTATgg < 2:2140500/150‑1 (MQ=255) gggAAGGCACCGAGGGCGTAAGCCTGGCCTTTGAAGATGATGGCGGCGTTCGTGTGACCTGGGAAAAGCCGCTAGAAGACTGATTTCGACAAACCCACCTTGC‑CCGCCTCGA‑GCGGGCTTTTTTTGCGCCATAGAAAAGTGAATTATggg < 2:550789/149‑1 (MQ=255) ggAAGGCACCGAGGGCGTAAGCCTGGCCTTTGAAGATGATGGCGGCGTTCGTGTGACCTGGGAAAAGCCGCTAGAAGACTGATTTCGACAAACCCACCTTGC‑CCGCCTCGA‑GCGGGCTTTTTTTGCGCCATAGAAAAGTGAATTATGGGt < 2:1150226/150‑1 (MQ=255) aGGCACCGAGGGCGTAAGCCTGGCCTTTGAAGATGATGGCGGCGTTCGTGTGACCTGGGAAAAGCCGCTAGAAGACTGATTTCGACAAACCCACCTTGC‑CCG‑CTCGAGGCGGGcaag < 2:1841175/117‑4 (MQ=255) aGGCACCGAGGGCGTAAGCCTGGCCTTTGAAGATGATGGCGGCGTTCGTGTGACCTGGGAAAAGCCGCTAGAAGACTGATTTCGACAAACCCACCTTGC‑CCG‑CTCGAGGCGGGcaag > 1:1841175/1‑114 (MQ=255) gCACCGAGGGCGTAAGCCTGGCCTTTGAAGATGATGGCGGCGTTCGTGTGACCTGGGAAAAGCCGCTAGAAGACTGATTTCGACAAACCCACCTTGC‑CCGCCTCGA‑GCGGGCTTTTTTTGCGCCATAGAAAAGTGAATTATGGGTaccac < 1:2254884/150‑1 (MQ=255) gCACCGAGGGCGTAAGCCTGGCCTTTGAAGATGATGGCGGCGTTCGTGTGACCTGGGAAAAGCCGCTAGAAGACTAATTTCGACAAACCCACCTTGC‑CCGCCTCGA‑GCGGGCTTTTTTTGCGCCATAGAAAAGTGAATTATGGGTaccac < 1:614938/150‑1 (MQ=255) cACCGAGGGCGTAAGCCTGGCCTTTGAAGATGATGGCGGCGTTCGTGTGACCTGGGAAAAGCCGCTAGAAGACTGATTTCGACAAACCCACCTTGC‑CCGCCTCGA‑GCGGGCTTTTTTTGCGCCATa > 1:1472598/1‑126 (MQ=255) cACCGAGGGCGTAAGCCTGGCCTTTGAAGATGATGGCGGCGTTCGTGTGACCTGGGAAAAGCCGCTAGAAGACTGATTTCGACAAACCCACCTTGC‑CCGCCTCGA‑GCGGGCTTTTTTTGCGCCATAGAAAAGTGAATTATGGGTaccacc > 2:1829268/1‑150 (MQ=255) aCCGAGGGCGTAAGCCTGGCCTTTGAAGATGATGGCGGCGTTCGTGTGACCTGGGAAAAGCCGCTAGAAGACTGATTTCGACAAACCCACCTTGC‑CCGCCTCGA‑GCGGGCTTTTTTTGCGCCATAGAAAAGTGAATTATGGGTAccacca > 1:1670463/1‑150 (MQ=255) aCCGAGGGCGTAAGCCTGGCCTTTGAAGATGATGGCGGCGTTCGTGTGACCTGGGAAAAGCCGCTAGAAGACTGATTTCGACAAACCCACCTTGC‑CCGCCTCGA‑GCGGGCTTTTTTTGCGCCATAGAAAAGTGAATTATGGGTAccacca > 2:2144341/1‑150 (MQ=255) aCCGAGGGCGTAAGCCTGGCCTTTGAAGATGATGGCGGCGTTCGTGTGACCTGGGAAAAGCCGCTAGAAGACTGATTTCGACAAACCCACCTTGC‑CCGCATCGA‑GCGGGCTTTTTTTGCGCCATAGAAAAGTGAATTATGGGTAacacca > 2:2054823/1‑150 (MQ=255) aCCGAGGGCGTAAGCCTGGCCTATGAAGATGATGGCGGCGTTCGTGTGACCTGGGAAAAGCCGCTAGAAGACTGATTTCGACAAACCCACCTTGC‑CCGCCTCGA‑GCGGGCTTTTTTTGCGCCATAGAAAAGTGAATTATGGGTAccacca > 1:1508628/1‑150 (MQ=255) gAGGGCGTAAGCCTGGCCTTTGAAGATGATGGCGGCGTTCGTGTGACCTGGGAAAAGCCGCTAGAAGACTGATTTCGACAAACCCACCTTGC‑CCGCCTCGA‑GCGGGCTTTTTTTGCGCCATAGAAAAGTGAATTATGGGTACCACCATaa > 2:831682/1‑150 (MQ=255) gAGGGCGTAAGCCTGGCCTTTGAAGATGATGGCGGCGTTCGTGTGACCTGGGAAAAGCCGCTAGAAGACTGATTTCGACAAACCCACCTTGC‑CCGCCTCGA‑GCGGGCTTTTTTTGCGCCATAGAAAAGTGAATTATGGGTACCACCATaa < 1:1993164/150‑1 (MQ=255) gAGGGCGTAAGCCTGGCCTTTGAAGATGATGGCGGCGTTCGTGTGACCTGGGAAAAGCCGCTAGAAGACTGATTTCGACAAACCCACCTTGC‑CCGCCTCGA‑GCGGGCTTTTTTTGCGCCATAGAAAAGTGAATTATGGGTACCACCATaa < 2:1928404/150‑1 (MQ=255) tAAGCCTGGCCTTTGAAGATGATGGCGGCGTTCGTGTGACCTGGGAAAAGCCGCTAGAAGACTGATTTCGACAAACCCACCTTGC‑CCGCCTCGA‑GCGGGCTTTTTTTGCGCCATAGAAAAGTGAATTATGGGTACCACCATAACATTTAt < 1:2144341/150‑1 (MQ=255) tAAGCCTGGCCTTTGAAGATGATGGCGGCGTTCGTGTGACCTGGGAAAAGCCGCTAGAAGACTGATTTCGACAAACCCACCTTGC‑CCGCCTCGA‑GCGGGCTTTTTTTGCGCCATAGAAAAGTGAATTATGGGTACCACCATAACATTTAt < 2:912219/150‑1 (MQ=255) ccTGGCCTTTGAAGATGATGGCGGCGTTCGTGTGACCTGGGAAAAGCCGCTAGAAGACTGATTTCGACAAACCCACCTTGC‑CCGCCTCGA‑GCGGGCTTTTTTTGCGCCATAGAAAAGTGAATTATGGGTACCACCATAACATTTATGAGc > 1:650303/1‑150 (MQ=255) tttGAAGATGATGGCGGCGTTCGTGTGACCTGGGAAAAGCCGCTAGAAGACTGATTTCGACAAACCCACCTTGC‑CCGCCTCGA‑GCGGGCTTTTTTTGCGCCATAGAAAAGTGAATTATGGGTACCACCATAACATTTATGAGCAAACCCa > 1:952826/1‑150 (MQ=255) ttGAAGATGATGGCGGCGTTTGTGTAACCTGGGAAAAGCCGCTAGAAGCCTGATTTCGACAAACCCACCTTGC‑CCGCCTCGA‑GCGGGCTTTTTTTGCGCCATAGAAAAGTGAATTATGGGTACCACCATAACATTTATGAGCAAACCCAt < 2:1084770/150‑1 (MQ=255) ttGAAGATGATGGCGGCGTTCGTGTGACCTGGGAAAAGCCGCTAGAAGACTGATTTCGACAAACCCACCTTGC‑CCGCCTCGA‑GCGGGCTTTTTTTGCGCCATAGAAAAGTGAATTATGGGTACCACCATAACATTTATGAGCAAACCCAt < 1:1829268/150‑1 (MQ=255) tGAAGATGATGGCGGCGTTCGTGTGACCTGGGAAAAGCCGCTAGAAGACTGATTTCGACAAA‑CCAAATCGCTCCGCCTCGA‑GCGGGCTTTTTTTGCGCCATAGAAAAGTGAATTATGGGTACCACCATAACATTTATGAGCAAACCCAtt < 1:151542/150‑1 (MQ=255) gAAGATGATGGCGGCGTTCGTGTGACCTGGGAAAAGCCGCTAGAAGACTGATTTCGACAAACCCACCTTGC‑CCGCCTCGA‑GCGGGCTTTTTTTGCGCCATAGAAAAGTGAATTATGGGTACCACCATAACATTTATGAGCAAACCCAt < 2:1331017/148‑1 (MQ=255) gAAGATGATGGCGGCGTTCGTGTGACCTGGGAAAAGCCGCTAGAAGACTGATTTCGACAAACCCACCTTGC‑CCGCCTCGA‑GCGGGCTTTTTTTGCGCCATAGAAAAGTGAAGTATGGGTACCACCATAACATTTATGAGCAAACCCAt > 1:1331017/1‑148 (MQ=255) aaGATGATGGCGGCGTTCGTGTGACCTGGGAAAAGCCGCTAGAAGACTGATTTCGACAAACCCACCTTGC‑CCGCCTCGA‑GCGGGCTTTTTTTGCGCCATAGAAAAGTGAATTATGGGTACCACCATAACATTTATGAGCAAACCCATTGa < 2:2048821/150‑1 (MQ=255) gatgGCGGCGTTCGTGTGACCTGGGAAAAGCCGCTAGAGGACTGATTTCGACAAACCCACCTTGC‑CCGCCTCGA‑GCGGGCTTTTTTTGCGCCATAGAAAAGTGAATTATGGGTACCACCATAACATTTATGAGCAAACCCATTGACACaa > 2:1395993/1‑150 (MQ=255) gcgTTCGTGTGACCTGGGAAAAGCCGCTAGAAGCCTGATTTCAACATCCGCATCTTGC‑CCGCCTCGA‑GCGGGCTTTTGAGGCGCCATAGAAAAGTGAATTATGGGTACCACCATAACATTTATGAGCAAACCCATTGACACAAAATATGa < 1:542325/150‑1 (MQ=255) cgTTCGTGTGACCTGGGAAAAGCCGCTAGAAGACTGATTTCGACAAACCCACCTTGC‑CCGCCTCGA‑GCGGGCTTTTTTTGCGCCATAGAAAAGTGAATTATGGGTACCACCATAACATTTATGAGCAAACCCATTGACACAAAATATGAg < 2:48414/150‑1 (MQ=255) cgTTCGTGTGACCTGGGAAAAGCCGCTAGAAGACTGATTTCGACAAACCCACCTTGC‑CCGCCTCGA‑GCGGGCTTTTTTTGCGCCATAGAAAAGTGAATTATGGGTACCACCATAACATTTATGAGCAAACCCATTGACACAAAATATGAg < 2:727869/150‑1 (MQ=255) gTTCGTGTGACCTGGGAAAAGCCGCTAGAAGACTGATTTCGACAAACCCACCTTGC‑CCGCCTCGA‑GCGGGCTTTTTTTGCGCCATAGAAAAGTGAATTATGGGTACCACCATAACATTTATGAGCAAACCCATTGACACAAAATATGAGc > 1:1003957/1‑150 (MQ=255) gtgtGACCTGGGAAAAGCCGCTAGAAGACTGATTTCGACAAACCCACCTTGC‑CCGCCTCGA‑GCGGGCTTTTTTTGCGCCATAGAAAAGTGAATTATGGGTACCACCATAACATTTATGAGCAAACCCATTGACACAAAATATGAGcatac > 1:265147/1‑150 (MQ=255) tgtgACCTGGGAAAAGCCGCTAGAAGACTGATTTCGACAAACCCACCTTGC‑CCGCCTCGA‑GCGGGCTTTTTTTGCGCCATAg > 2:1056731/1‑82 (MQ=255) tgtgACCTGGGAAAAGCCGCTAGAAGACTGATTTCGACAAACCCACCTTGC‑CCGCCTCGA‑GCGGGCTTTTTTTGCGCCATAg < 1:1056731/82‑1 (MQ=255) tgtgACCTGGGAAAAGCCGCTAGAAGACTGATTTCGACAAACCCACCTTGC‑CCGCCTCGA‑GCGGGCTTTTTTTCCTCCATAGCAACATTAATTTTGAGTACCACCCTAACATTCACGAGCTACCCCTCTCACAAAAAACATTCGcatact > 2:1496642/1‑150 (MQ=255) cTGGGAAAAGCCGCTAGAAGACTGATTTCGACAAACCCACCTTGC‑CCGCCTCGA‑GCGGGCTTTTTTTGCGCCATAGAAAAGTGAATTATGGGTACCACCATAACATTTATGAGCAAACCCATTGACACAAAATATGAGcatactcatact > 2:105365/1‑150 (MQ=255) cTGGGAAAAGCCGCTAGAAGACTGATTTCGACAAACCCACCTTGC‑CCGCCTCGA‑GCGGGCTTTTTTTGCGCCATAGAAAAGTGAATTATGGGTACCACCATAACATTTATGAGCAAACCCATTGACACAAAATATGAGcatactcatact > 2:2101361/1‑150 (MQ=255) cTGGGAAAAGCCGCTAGAAGACTGATTTCGACAAACCAACCTTGC‑CCGCCTCGA‑GCGGGCTTTTTTTGCGCCATAGAAAAGTGAATTATgg > 2:1893237/1‑91 (MQ=255) tGGGAAAAGCCGCTAGAAGACTGATTTCGACAAACCCACCTTGC‑CCGCCTCGA‑GCGGGCTTTTTTTGCGCCATAGaaaa < 1:1843490/79‑1 (MQ=255) tGGGAAAAGCCGCTAGAAGACTGATTTCGACAAACCCACCTTGC‑CCGCCTCGA‑GCGGGCTTTTTTTGCGCCATAGAAAAGTGAATTATTGGTACCACCATAACATTTATGAGCAAACCCATTGACACAAAATATGAGCatactcatactc < 1:360375/150‑1 (MQ=255) tGGGAAAAGCCGCTAGAAGACTGATTTCGACAAACCCACCTTGC‑CCGCCTCGA‑GCGGGCTTTTTTTGCGCCATAGAAAAGTGAATTATGGGTACCACCATAACATTTATGAGCAAACCCATTGACACAAAATATGAGCatactcatactc > 2:2254488/1‑150 (MQ=255) gggAAAAGCCGCTAGAAGACTGATTTCGACAAACCCACCTTGC‑CCGCCTCGA‑GCGGGCTTTTTTTGCGCCATAGAAAAGTGAATTATGGGTACCACCATAACATTTATGAGCAAACCCATTGACACAAAATATGAGCATACTCATACTCg > 1:2392407/1‑150 (MQ=255) gAAAAGCCGCTAGAAGACTGATTTCGACAAACCCACCTTGC‑CCGCCTCGA‑GCGGGCTTTTTTTGCGCCATAGCCATGTCAATTATGCGTATTTTTACAACATGTATTAGCAAACCCATTGACACAAAATATGAGCATACTCATACTCGCt < 1:2101361/150‑1 (MQ=255) gCCGCTAGAAGACTGATTTCGACAAACCCACCTTGC‑CCGCCTCGA‑GCGGGCTTTTTTTGCGCCATAGAAAAGTGAATTATGGGTACCACCATAACATTTATGAGCAAACCCATTGACACAAAatat < 2:1374619/126‑1 (MQ=255) gCTAGAAGACTGATTTCGACAAACCCACCTTGC‑CCGCCTCGA‑GCGGGCTTTTTTTGCGCCATAGAAAAGTGAATTATGGGTACCACCATAACATTTATGAGCAAACCCATTGACACAAAATATGAGcatactc > 1:642156/1‑133 (MQ=255) gCTAGAAGACTGATTTCGACAAACCCACCTTGC‑CCGCCTCGA‑GCGGGCTTTTTTTGCGCCATAGAAAAGTGAATTATGGGTACCACCATAACATTTATGAGCAAACCCATTGACACAAAATATGAGcatactc < 2:642156/133‑1 (MQ=255) tAGAAGACTGATTTCGACAAACCCACCTTGC‑CCGCCTCGA‑GCGGGCTTTTTTTGCGCCATAGAAAAGTGAATTATGGGTACCACCATAACATTTATGAGCAAACCCATTGACACAAAata < 2:1250169/120‑1 (MQ=255) tAGAAGACTGATTTCGACAAACCCACCTTGC‑CCGCCTCGA‑GCGGGCTTTTTTTGCGCCATAGAAAAGTGAATTATGGGTACCACAATAACATTTATGAGCAAACCCATTGACACAAAata > 1:1250169/1‑120 (MQ=255) gcagaCTGATTTCGACAAAGACACCTTGC‑CCGCCTGGA‑GCGGGGTTTTTTTGCGCAATAGAAACGTGAATTATGGGTACCACCATAACATTTATTAGCAAACCCATTGACACAAAATATGAGCATACTCATACTCGCTCCATCACCGGAt < 2:330340/148‑1 (MQ=255) gaagaCTGATTTCGACAAACCCACCTTGC‑CCGCCTCGA‑GCGGGCTTTTTTTGCGCCATAGAAAAGTGAATTATGGGTACCACCATAACATTTATGAGCAAACCCATTGACACAAAATATGAGCATACTCATACTCGCTCCATCACCGGAt > 1:2337589/1‑150 (MQ=255) gaagaCTGATTTCGACAAACCCACCTTGC‑CCGCCTCGA‑GCGGGCTTTTTTTGCGCCATAGAAAAGTGAATTATGGGTACCACCATAACATTTATGAGCAAACCCATTGACACAAAATATGAGCATACTCATACTCGCTCCATCACCGGAt < 2:1508628/150‑1 (MQ=255) tGATTTCGACAAACCCACCTTGC‑CCGCCTCGA‑GCGGGCTTTTTTTGCGCCATAGAAAAGTGAATTATGGGTACCACCATAACATTTATGAGCAAACCCATTGACACAAAATATGAGCATACTCATACTCGCTCCATCACCTGATAGacac > 2:1965220/1‑150 (MQ=255) tGATTTCGACAAACCCACCTTGC‑CCGCCTCGA‑GCGGGCTTTTTTTGCGCCATAGAAAAGTGAATTATGGGTACCACCATAACATTTATGAGCAAACCCATTGACACAAAATATGAGCATACTCATACTCGCTCCATCACCGGATAGacac < 1:1463536/150‑1 (MQ=255) tGATTTCGACAAACCCACCTTGC‑CCGCCTCGA‑GCGGGCTTTTTTTGCGCCATAGAAAAGTGAATTATGGGTACCACCATAACATTTATGAGCAAACCCATTGACACAAAATATGAGCATACTCATACTCGCTCCATCACCGGATAGacac < 1:831682/150‑1 (MQ=255) aTTTCGACAAACCCACCTTGC‑CCGCCTCGA‑GCGGGCTTTTTTTGCGCCATAGAAAAGTGAATTATGGGTACCACCATAACATTTATGAGCAAACCCATTGACACAAAATATGAGCATACTCATACTCGCTCCATCACCGGATAGACACCg < 2:2088259/150‑1 (MQ=255) tttCGACAAACCCACCTTGC‑CCGCCTCGA‑GCGGGCTTTTTTTGCGCCATAGAAAAGTGAATTATGGGTACCACCATAACATTTATGAGCAAACCCATTGACACAAAATATGAGcatactcatac < 1:460965/124‑1 (MQ=255) gACAAACCCACCTTGC‑CCGCCTCGA‑GCGGGCTTTTTTTGCGCCATAGAAAAGTGAATTATggg < 1:1980048/63‑1 (MQ=255) gACAAACCCACCTTGC‑CCGCCTCGA‑GCGGGCTTTTTTTGCGCCATAGAAAAGTGAATTATggg > 2:1980048/1‑63 (MQ=255) gACAAACCCACCTTGC‑CCGCCTCGA‑GCGGGCTTTTTTTGCGCCATAGAAAAGTGAATTATGGGTACCACCATAACATTTAt < 1:2194337/81‑1 (MQ=255) gACAAACCCACCTTGC‑CCGCCTCGA‑GCGGGCTTTTTTTGCGCCATAGAAAAGTGAATTATGGGTACCACCATAACATTTAt > 2:2194337/1‑81 (MQ=255) cccACCTTGC‑CCGCCTCGA‑GCGGGCTTTTTTTGCGCCATAGAAAAGTGAATTATgg > 2:1619673/1‑56 (MQ=255) cccACCTTGC‑CCGCCTCGA‑GCGGGCTTTTTTTGCGCCATAGAAAAGTGAATTATgg < 1:1619673/56‑1 (MQ=255) cccACCTTGC‑CCGCCTCGA‑GCGGGCTTTTTTTGCGCCATAGAAAAGTGAATTATGGGTACCACCATAACATTTATGAGCAAACCCATTGACACAAAATATGAGCATACTCATACTCGCTCCATCACCGGATAGACACCGGCCAGcaacaa > 2:952113/1‑150 (MQ=255) cctactcgC‑CCGTCTTAA‑GCTGGCTTTGGTTGCGCCATAGAAAAGTGAATTATGGGTACCACCATAACATTTATGAGCAAACCCATTGACACAAAATATGAGCATACTCATACTCGCTCCATCACCGGATAGACACCGGCCAGCAACaaa < 2:1715017/143‑1 (MQ=255) ccACCTTGC‑CCGCCTCGA‑GCGGGCTTTTTTTGCGCCATAGAAAAGTGAATTATGGGTACCACCATAACATTTATGAGCAAACCCATTGACACAAAATATGAGcata > 2:2043007/1‑106 (MQ=255) ccACCTTGC‑CCGCCTCGA‑GCGGGCTTTTTTTGCGCCATAGAAAAGTGAATTATGGGTACCACCATAACATTTATGAGCAAACCCATTGACACAAAATATGAGcata < 1:2043007/106‑1 (MQ=255) aCCTTGC‑CCGCCTCGA‑GCGGGCTTTTTTTGCGCCATAGAAAAGTGAATTATGGGTACCACCATAACATTTATGAGCAAACCCATTGACACAAAATATGAGCATACTCATACTCGCTCCATCACCGGATAGACACCGGCCAGCAACAAAgg > 1:535714/1‑150 (MQ=255) ccTTGC‑CCGCCTCGA‑GCGGGCTTTTTTTGCGCCATAGAAAAGTGAATTATTGGTACCACCATAACATTTATGAGCAAACCCATTGACACAAAATATGAGCATACTCATACTCGCTCCATCACCGGATAGACACCGGCCAGCAACAAAGGc < 1:872792/150‑1 (MQ=255) aaagC‑CCG‑CTCGAGGCGGGCTTTTTTTGCGCCATAGAAAAGTGAATTATGGGTACCACCATAACATTTATGAGCAAACCCATTGACACAAAATATGAGCATACTCATACTCGCTCCATCACCGGATAGACACCGGc < 2:693589/133‑1 (MQ=255) ttGC‑CCGCCTCGA‑GCGGGCTTTTTTTGCGCCATAGAAAAGTGAATTATGGGTACCACCATAACATTTATGAGCAAACCCATTGACACAAAATATGAGCATACTCATACTCGCTCCATCACCGGATAGACACCGGCCAGCAACAAAGGCAg < 1:105365/150‑1 (MQ=255) cccgcTCGAGGCGGGCTTTTTTTACGCCATAGAAAAGTGAATTATGGGTACCACCATAACATTTATGAGCAAACCCATTGACACAAAATATGAGCATACCCATACTCGCTCCATCACCGGATAGACACCGGCCAGCAACAAAGGCAGCGa > 1:666804/5‑150 (MQ=255) ccGCCTCGA‑GCGGGCTTTTTTTGCGCCATAGAAAAGTGAATTATGGGTACCACCATAACATTTATGAGCAAACCCATTGACACAAAATATGAGcatactc > 2:1310609/1‑100 (MQ=255) ccGCCTCGA‑GCGGGCTTTTTTTGCGCCATAGAAAAGTGAATTATGGGTACCACCATAACATTTATGAGCAAACCCATTGACACAAAATATGAGcatactc < 1:1310609/100‑1 (MQ=255) ccGCCTCGA‑GCGGGCTTTTTTTGCGCCATAGAAAAGTGAATTATGGGTACCACCATAACATTTATGAGCAAACCCATTGACACAAAATATGAGCATACTCATACTCGCTCCATCACCGGATAGACACCGGCCAGCAACAAAGGCAGCGaa > 2:2215131/1‑150 (MQ=255) ccGCCTCGA‑GCGGGCTTTTTTTGCGCCATAGAAAAGTGAATTATGGGTACCACCATAACATTTATGAGCAAACCCATTGACACAAAATATGAGCATACTCATACTCGCTCCATCACCGGATAGACACCGGCCAGCAACAAAGGCAGCGaa > 1:1025836/1‑150 (MQ=255) gCCTCGA‑GCGGGCTTTTTTTGCGCCATAGAAAAGTGAATTATGGGTACCACCATAACATTTATGAGCAAACCCATTGACACAAAATATGAGCATACTCATACTCGCTCCATCACCGGATa > 2:1524732/1‑120 (MQ=255) cTCGA‑GCGGGCTTTTTTTGCGCCATAGAAAAGTGAATTATGGGTACCACCATAACATTTATGAGCAAACCCATTGACACAAAATATGAGCATACTCATACTCGCTCCATCACCGGATAGACACCGGCCAGcaa < 1:103973/133‑1 (MQ=255) cTCGA‑GCGGGCTTTTTTTGCGCCATAGAAAAGTGAATTATGGGTACCACCATAACATTTATGAGCAAACCCATTGACACAAAATATGAGCATACTCATACTCGCTCCATCACCGGATAGACACCGGCCAGCAACAAAGGCAGCGAAAGTc > 1:793833/1‑150 (MQ=255) tCGA‑GCGGGCTTTTTTTGCGCCATAGAAAATTGAATTATGGGTACCACCATAACATTTATGAGCAAACCCATTGACACAAAATATGAGCATACTCATACTCGCTCCATCACCGGATAGACACCGGCCAGCAACAAAGGCAGCGAAAGTCg > 2:469534/1‑150 (MQ=255) | GAATCCCAGGAAGACTGGGGCGCGCTCGTCGAGGCCATGGAAGGCACCGAGGGCGTAAGCCTGGCCTTTGAAGATGATGGCGGCGTTCGTGTGACCTGGGAAAAGCCGCTAGAAGACTGATTTCGACAAACCCACCTTGC‑CCGCCTCGA‑GCGGGCTTTTTTTGCGCCATAGAAAAGTGAATTATGGGTACCACCATAACATTTATGAGCAAACCCATTGACACAAAATATGAGCATACTCATACTCGCTCCATCACCGGATAGACACCGGCCAGCAACAAAGGCAGCGAAAGTCG > NC_002947/4415983‑4416277 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |