| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 47,142:1 | +G | 5.8% | coding (2233/3162 nt) | czcA‑I ← | cation efflux system protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 47,142 | 1 | . | G | 5.8% | 644.9 / 30.5 | 155 | coding (2233/3162 nt) | czcA‑I | cation efflux system protein |
| Reads supporting (aligned to +/- strand): ref base . (71/75); new base G (5/4); total (76/79) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.43e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.17e-01 | |||||||||||
Only 100 of 161 total aligned reads displayed.
TACCGGGATCAGCAAGCTGGACATACCCGCTACGTCGGTGCGAACGGTCTCTGGTAGGCGTACTACCATGTCGAACCGACGGTCGCCCTCATACAGCGTGCCGGCCTGACGGCCACCCACGGCGATAGCGATCGAGTTCTGAACATCCGC‑GATGTTCAGGCCGTAGCGTGCTGCTTTTTCGCGGTCAATGTTGATGGTCAGCACCGGCAGGCCGGATGTCTGCTCAACTTTCACTTCCGATGAGCCCGGGACCGCTTTGAGCGCTGCCGCGATCTTGTTGGCGGTGTTGTTGAGCACG > NC_002947/46993‑47290 | tACCGGGATCAGCAAGCTGGACATACCCGCTACGTCGGTGCGAACGGTCTCTGGTAGGCGTACTACCATGTCGAACCGACGGTCGCCCTCATACAGCGTGCCGGCCTGACGGCCACCCACGGCGATAGCGATCGAGTTCTGAACATCcgc < 2:1585421/150‑1 (MQ=255) cGGGATCAGCAAGCTGGACATACCCGCTACGTCGGTGCGAACGGTCTCTGGTAGGCGTACTACCATGTCGAACCGACGGTCGCCCTCATACAGCGTGCCGGCCTGACGGCCACCCACGGCGATAGCGATCGAGTTCTGAACATCCGC‑GAt < 2:1915390/150‑1 (MQ=255) tCAGCAAGCTGGACATACCCGCTACGTCGGTGCGAACGGTCTCTGGTAGGCGTACTACCATGTCGAACCGACGGTCGCCCTCATACAGCGTGCCGGCCTGACGGCCACCCACGGCGATAGCGATCGAGTTCTGAACAT‑CGCGGATGTTCa < 2:670078/150‑1 (MQ=255) gCAAGCTGGACATACCCGCTACGTCGGTGCGAACGGTCTCTGGTAGGCGTACTACCATGTCGAACCGACGGTCGCCCTCATACAGCGTGCCGGCCTGACGGCCACCCACGGCGATAGCGATCGAGTTCTGAACATCCGC‑GATGTTCAGGc > 2:1529661/1‑150 (MQ=255) gCAAGCTGGAAATACCCGCTACGTAGGTGCGAACGGTCTTTGGTAGGCGTACTACCAGGTCTAACCGACGGTCGCCTTCATACAGCGTGCCGGCCTGACGGCCACCCACGGCGATAGCGATCGAGTTCTGAACATCCGC‑GATGTTCAGGc > 2:24896/1‑150 (MQ=255) gCTGGACATACCCGCTACGTCGGTGCGAACGGTCTCTGGTAGGCGTACTACCATGTCGAACCGACGGTCGCCCTCATACAGCGTGCCGACCTGACGGCCACCCACGGCGATAGCGATCGAGTTCTGAACATCCGC‑GATGTTCAGGCCGTa > 1:180996/1‑150 (MQ=255) aTACCCGCTACGTCGGTGCGAACGGTCTCTGGTAGGCGTACTACCATGTCGAACCGACGGTCGCCCTCATACAGCGTGCCGGCCTGACGGCCACCCACGGCGATAGCGATCGAGTTCTGAACATCCGC‑GAt < 1:1139508/131‑1 (MQ=255) aTACCCGCTACGTCGGTGCGAACGGTCTCTGGTAGGCGTACTACCATGTCGAACCGACGGTCGCCCTCATACAGCGTGCCGGCCTGACGGCCACCCACGGCGATAGCGATCGAGTTCTGAACATCCGC‑GAt > 2:1139508/1‑131 (MQ=255) ccGCTACGTCGGTGCGAACGGTCTCTGGTAGGCGTACTACCATGTCGAACCGACGGTCGCCCTCATACAGCGTGCCGGCCTGACGGCCACCCACGGCGATAGCGATCGAGTTCTGAACATCCGC‑GATGTTCAGGCCGTAGCGTGCTGCtt > 2:1787895/1‑150 (MQ=255) cGCTACGTCGGTGCGAACGGTCTCTGGTAGGCGTACTACCATGTCGAACCGACGGTCGCCCTCATACAGCGTGCCGGCCTGACGGCCACCCACGGCGATAGCGATCGAGTTCTGAACATCCGC‑GATGTTCAGGCCGTAGCGTGCTGCttt > 2:1483058/1‑150 (MQ=255) aCGTCGGTGCGAACGGTCTCTGGTAGGCGTACTACCATGTCGAACCGACGGTCGCCCTCATACAGCGTGCCGGCCTGACGGCCACCCACGGCGATAGCGATCGAGTTCTGAACATCCGC‑GATGTTCAg < 2:78819/128‑1 (MQ=255) gCGAACGGTCTCTGGTAGGCGTACTACCATGTCGAACCGACGGTCGCCCTCATACAGCGTGCCGGCCTGACGGCCACCCACGGCGATAGCGATCGAGTTCTGAACATCCGC‑GATGTTCAGGCCGTAGCGTGCTGCTTTTTCGCGGTCAAt < 2:2164069/150‑1 (MQ=255) ggTCTCTGGTAGGCGTACTACCATGTCGAACCGACGGTCGCCCTCATACAGCGTGCCGACCTGACGGCCACCCACGGCGATAGCGATCGAGTTCTGAACATCCGC‑GATGTTCAGGCCGTAGCGTGCTGCTTTTTCGCGGTCAATGTTGAt < 2:180996/150‑1 (MQ=255) gTCTCTGGTAGGCGTACTACCATGTCGAACCGACGGTCGCCCTCATACAGCGTGCCGGCCTGACGGCCACCCACGGCGATAGCGATCGAGTTCTGAACATCCGC‑GATGTTCAGGCCGTAGCGTGCTGCTTTTTCGCGGTCAATGTTGATg < 2:486165/150‑1 (MQ=255) tctGGTAGGCGTACTACCATGTCGAACCGACGGTCGCCCTCATACAGCGTGTCGGCCTGACTGCCACCCACGGCGATAGCGATCGAGTTCTGAACATCcgc < 2:854823/101‑1 (MQ=255) tctGGTAGGCGTACTACCATGTCGAACCGACGGTCGCCCTCATACAGCGTGCCGGCCTGACGGCCACCCACGGCGATAGCGATCGAGTTCTGAACATCcgc > 1:854823/1‑101 (MQ=255) cggTAGGCGTACCCCCATGTCGAACCGACGGTCGCCCTCATACAGCGTGCCGGCCTGACGGCCACCCACGGCGATAGCGATCGAGTTCTGATCATCCGC‑GATGTTCAGGCCGTAGCGTGCTGCTTTTTCGCGGTCAATGTTGATGGTCAg < 2:1123890/149‑1 (MQ=255) gTACTACCATGTCGAACCGACGGTCGCCCTCATACAGCGTGCCGGCCTGACGGCCACCCACGGCGATAGCGATCGAGTTCTGAACATCCGC‑GATGTTCAgg > 1:1283397/1‑101 (MQ=255) tactacCATGTCGAACCGACGGTCGCCCTCATACAGCGTGCCGGCCTGACGGCCACCCACGGCGATAGCGATCGAGTTCTGAACATCCGC‑GATGTTCAGGCCGTAGCGTGCTGCTTTTTCGCGGTCAATGTTGATGGTCAGCACCGGCAg > 1:2307528/1‑150 (MQ=255) actacCATGTCGAACCGACGGTCGCCCTCATACAGCGTGCCGGCCTGACGGCCACCCACGGCGATAGCGATCGAGTTCTGAACATCCGC‑GATGTTCAGGCCGTAGCGtgc < 1:1900140/110‑1 (MQ=255) actacCATGTCGAACCGACGGTCGCCCTCATACAGCGTGCCGGCCTGACGGCCACCCACGGCGATAGCGATCGAGTTCTGAACATCCGC‑GATGTTCAGGCCGTAGCGtgc > 2:1900140/1‑110 (MQ=255) actacCATGTCGAACCGACGGTCGCCCTCATACAGCGTGCCGGCCTGACGGCCACCCACGGCGATAGCGATCGAGTTCTGAACATCCGC‑GATGTTCAGGCCGTAGCGTGCTGCTTTTTCGCGGTCAATGTTGATGGTCAGCACCGGCAgg > 1:2352488/1‑150 (MQ=255) ctacCATGTCGAACCGACGGTCGCCCTCATACAGCGTGCCGGCCTGACGGCCACCCACGGCGATAGCGATCGAGTTCTGAACATCCGC‑GATGTTCAGGCCGTAGCGTGCTGCTTTTTCGCGGTCAATGt > 2:1733726/1‑129 (MQ=255) aTGTCGAACCGACGGTCGCCCTCATACAGCGTGCCGGCCTGACGGCCACCCACGGCGATAGCGATCGAGTTCTGAACATCCGC‑GATGTTCAGGCCGTAGCGTGCTGCTTTTTCGCGGTCAATGTTGATGGTCAGCACCg > 2:915072/1‑139 (MQ=255) aTGTCGAACCGACGGTCGCCCTCATACAGCGTGCCGGCCTGACGGCCACCCACGGCGATAGCGATCGAGTTCTGAACATCCGC‑GATGTTCAGGCCGTAGCGTGCTGCTTTTTCGCGGTCAATGTTGATGGTCAGCACCg < 1:915072/139‑1 (MQ=255) gTCGAACCGACGGTCGCCCTCATACAGCGTGCCGGCCTGACGGCCACCCACGGCGATAGCGATCGAGTTCTGAACATCCGC‑GATGTTCAGGCCGTAGCGTGCTGCTTTTTCGCGGTCAATGTTGATGGTCAGCACCGGCAGGCCGGATGt > 1:2141099/1‑150 (MQ=255) tCGAACCGACGGTCGCCCTCATACAGCGTGCCGGCCTGACGGCCACCCACGGCGATAGCGATCGAGTTCTGAACATCCGC‑GATGTTCAGGCCGTAGCGTGCTGCTTTTTCGCGGTCAATGTTGATGGTCAGCACCg > 1:160053/1‑136 (MQ=255) tCGAACCGACGGTCGCCCTCATACAGCGTGCCGGCCTGACGGCCACCCACGGCGATAGCGATCGAGTTCTGAACATCCGC‑GATGTTCAGGCCGTAGCGTGCTGCTTTTTCGCGGTCAATGTTGATGGTCAGCACCg > 1:159612/1‑136 (MQ=255) tCGAACCGACGGTCGCCCTCATACAGCGTGCCGGCCTGACGGCCACCCACGGCGATAGCGATCGAGTTCTGAACATCCGC‑GATGTTCAGGCCGTAGCGTGCTGCTTTTTCGCGGTCAATGTTGATGGTCAGCACCg < 2:159612/136‑1 (MQ=255) tCGAACCGACGGTCGCCCTCATACAGCGTGCCGGCCTGACGGCCACCCACGGCGATAGCGATCGAGTTCTGAACATCCGC‑GATGTTCAGGCCGTAGCGTGCTGCTTTTTCGCGGTCAATGTTGATGGTCAGCACCGGCAGGCCGGATGTc > 2:2207795/1‑150 (MQ=255) tCGAACCGACGGTCGCCCTCATACAGCCTGCCCGCCTGACGGCCACCCACGGCGATAGCGATCGAGTTCTCCACACCCGC‑GATGTTCAGGCCGTAGCGTGCTGCTTTTTCGCGGTCAATATTGATGGTCAGCCCCCGCAGGCCGGATGTc > 2:1206191/1‑150 (MQ=255) gAACCGACGGTCGCCCTCATACAGCGTGCCGGCCTGACGGCCACCCACGGCGATAGCGATCGAGTTCTGAACATCCGC‑GATGTTCAGGCCGTAGCGTGCTGCTTTTTCGCGGTCaa < 2:602974/116‑1 (MQ=255) aaCCGACGGTCGCCCTCATACAGCGTGCCGGCCTGACGGCCACCCACGGCGATAGCGATCGAGTTCTGAACATCCGC‑GATGTTCAGGCCGTAGCGTGCTGCTTTTTCGCGGTCAATGTTGATg < 1:2084260/123‑1 (MQ=255) aaCCGACGGTCGCCCTCATACAGCGTGCCGGCCTGACGGCCACCCACGGCGATAGCGATCGAGTTCTGAACATCCGC‑GATGTTCAGGCCGTAGCGTGCTGCTTTTTCGCGGTCAATGTTGATGGTCAGCACCGGCAGGCCGGATGTCTGc > 2:75473/1‑150 (MQ=255) aaCCGACGGTCGCCCTCATACAGCGTGCCGGCCTGACGGCCACCCACGGCGATAGCGATCGAGTTCTGAACATCCGC‑GATGTTCAGGCCGTAGCGTGCTGCTTTTTCGCGGTCAATGTTGATGGTCAGCACCGGCAGGCCGGATGTCTGc > 1:1029360/1‑150 (MQ=255) aaCCGACGGTCGCCCTCATACAGCGTGCCGGCCTGACGGCCACCCACGGCGATAGCGATCGAGTTCTGAACATCCGC‑GATGTTCAGGCCGTAGCGTGCTGCTTTTTCGCGGTCAATGTTGATGGTCAGCACCGGCAGGCCGGATGTCTGc > 2:28399/1‑150 (MQ=255) gACGGTCGCCCTCATACAGCGTGCCGGCCTGACGGCCACCCACGGCGATAGCGATCGAGTTCTGAACATCCGC‑GATGTTCAGGCCGTAGCGTGCTGCTTTTTCGCGGTCAATGTTGATGGTCAGCACCGGCAGGCCGGATGTCTGCTCaa < 2:1029360/150‑1 (MQ=255) ggTCGCCCTCATACAGCGTGCCGGCCTGACGGCCACCCACGGCGATAGCGATCGAGTTCTGAACATCCGC‑GATGTTCAGGCCGTAGCGTGCTGCTTTTTCGCGGTCAATGTTGATGGTCAGCACCGGCAGGCCGGa > 1:1885024/1‑136 (MQ=255) ccTCATACAGCGTGCCGGCCTGACGGCCACCCACGGCGATAGCGATCGAGTTCTGAACATCCGC‑GATGTTCAGGCCGTAGCGTGCTGCTTTTTCGCGGTCAATGTTGATg < 1:1375878/110‑1 (MQ=255) ccTCATACAGCGTGCCGGCCTGACGGCCACCCACGGCGATAGCGATCGAGTTCTGAACATCCGC‑GATGTTCAGGCCGTAGCGTGCTGCTTTTTCGCGGTCAATGTTGATg > 2:1375878/1‑110 (MQ=255) tCATACAGCGTGCCGGCCTGACGGCCACCCACGGCGATAGCGATCGAGTTCTGAACATCCGC‑GATGTTCAGGCCGTAGCGTGCTGCTTTTTCGCGGTCAATGTTGATg < 2:2318959/108‑1 (MQ=255) tCATACAGCGTGCCGGCCTGACGGCCACCCACGGCGATAGCGATCGAGTTCTGAACATCCGC‑GATGTTCAGGCCGTAGCGTGCTGCTTTTTCGCGGTCAATGTTGATGGTCAGCACCGGCAGGCCGGATGTCTGCTCAACTTTCACTTcc > 1:2321756/1‑150 (MQ=255) aTACAGCGTGCCGGCCTGACGGCCACCCACGGCGATAGCGATCGAGTTCTGAACATCCGC‑GATGTTCAGGCCGTAGCGTGCTGCTTTTTCGCGGTCAATGTTGATGGTCAGCACCGGCAGGCCGGATGTCTGCTCAACTTTCACTTCCGa > 2:2344261/1‑150 (MQ=255) aTACAGCGTGCCGGCCTGACGGCCACCCACGGCGATAGCGATCGAGTTCTGAACATCCGC‑GATGTTCAGGCCGTAGCGTGCTGCTTTTTCGCGGTCAATGTTGATGGTCAGCACCGGCAGGCCGGATGTCTGCTCAACTTTCACTTCCGa < 1:75473/150‑1 (MQ=255) aTACAGCGTGCCGGCCTGACGGCCACCCACGGCGATAGCGATCGAGTTCTGAACATCCGC‑GATGTTCAGGCCGTAGCGTGCTGCTTTTTCGCGGTCAATGTTGATGGTCAGCACCGGCAGGCCGGATGTCTGCTCAACTTTCACTTCCGa > 1:1634695/1‑150 (MQ=255) aTACAGCGTGCCGGCCTGACGGCCACCCACGGCGATAGCGATCGAGTTCTGAACATCCGC‑GATGTTCAGGCCGTAGCGTGCTGCTTTTTCGCGGTCAATGTTGATGGTCAGCACCGGCAGGCCGGATGTCTGCTCAACTTTCACTTCCGa < 1:2207795/150‑1 (MQ=255) tACAGCGTGCCGGCCTGACGGCCACCCACGGCGATAGCGATCGAGTTCTGAACATCCGC‑GATGTTCAGGCCGTAGCGTGCTGCTTTTTCGCGGTCAATGTTGATGGTCAGCACCGGCAGGCCGGATGTCTGCTCAACTTTCACTTCCGAt < 1:281310/150‑1 (MQ=255) cAGCGTGCCGGCCTGACGGCCACCCACGGCGATAGCGATCGAGTTCTGAACATCCGC‑GATGTTCAGGCCGTAGCGTGCTGCTTTTTCGCGGTCAATGTTGATGGTCAGCACCGGCAGGCCGGATGTCTGCTCAACTTTCACTTCCGATGa > 2:525312/1‑150 (MQ=255) gTGCCGGCCTGACGGCCACCCACGGCGATAGCGATTGAGTTCTGAACATCCGC‑GATGGCCAGGCCGTAGCGTGCTGCTTTTTCGCGGTCAATGTTGATGGTCAGCACCGGCAGGCCGGATGTCTGCTCAACTTTCACTTCCGATGAGccc < 1:24896/150‑1 (MQ=255) gTGCCGGCCTGACGGCCACCCACGGCGATAGCGATCGAGTTCTGAACATCCGC‑GATGTTCAGGCCGTAGCGTGCTGCTTTTTCGCGGTCAATGTTGATGGTCAGCACCGGCAGGCCGGATGTCTGCTCAACTTTCACTTCCGATGAGccc > 1:705348/1‑150 (MQ=255) tGCCGGCCTGACGGCCACCCACGGCGATAGCGATCGAGTTCTGAACATCCGC‑GATGTTCAGGCCGTAGCGTGCTGCTTTTTCGCGGTCAATGTTGATGGTCAGCACCGGCAGGCCGGATGTCTGCTCAACTTTCACTTCCGATGAGCCCg > 1:268443/1‑150 (MQ=255) gCCGGCCTGACGGCCACCCACGGCGATAGCGATCGAGTTCTGAACATCCGC‑GATGTTCAGGCCGTAGCGTGCTGCTTTTTCGCGGTCAATGTTGATGGTCAGCACCGGCAGGCCGGATGTCTGCTCAACTTTCACTTCCGATGAGCCCgg < 1:1047866/150‑1 (MQ=255) cGGCCTGACGGCCACCCACGGCGATAGCGATCGAGTTCTGAACATCCGC‑GATGTTCAGGCCGTAGCGTGCTGCTTTTTCGCGGTCAATGTTGATGGTCAGCACCGGCAGGCCGGATGTCTGCTCAACTTTCACTTCCGATGAGCCCGGGa < 1:1396831/150‑1 (MQ=255) cGGCCTGACGGCCACCCACGGCGATAGCGATCGAGTTCTGAACATCCGC‑GATGTTCAGGCCGTAGCGTGCTGCTTTTTCGCGGTCAATGTTGATGGTCAGCACCGGCAGGCCGGATGTCTGCTCAACTTTCACTTCCGATGAGCCCGGGa < 1:1483058/150‑1 (MQ=255) tGACGGCCACCCACGGCGATAGCGATCGAGTTCTGAACATCCGC‑GATGTTCAGGCCGTAGCGTGCTGCTTTTTCGCGGTCAATGTTGATGGTCAGCACCGGCAGGCCGGATGTCTGCTCAACTTTCACTTCCGATGAGCCCGGGACCGCt < 1:1816839/150‑1 (MQ=255) gACGGCCACCCACGGCGATAGCGATCGAGTTCTGAACATCCGC‑GATGTTCAGGCCGTAGCGTGCTGCTTTTTCGCGGTCAATGTTGATGGTCAGCACCGGCAGGCCGGATGTCTGCTCAACTTTCACTTCCGATGAGCCCGGGACCGCtt < 1:558292/150‑1 (MQ=255) aCGGCCACCCACGGCGATAGCGATCGAGTTCTGAACATCCGC‑GATGTTCAGGCCGTAGCGTGCTGCTTTTTCGCGGTCAATGTTGATGGTCAGCACCGGCAGGCCGGATGTCTGCTCAACTTTCACTTCCGATGAGCCCGGGACCGCttt < 1:1126251/150‑1 (MQ=255) gCCACCCACGGCGATAGCGATCGAGTTCTGAACATCCGC‑GATGTTCAGGCCGTAGCGTGCTGCTTTTTCGCGGTCAATGTTGATGGTCAGCACCGGCAGGCCGGATGTCTGCTCAACTTTCACTTCCGATGAGCCCGGGACCg > 2:1542883/1‑143 (MQ=255) gCCACCCACGGCGATAGCGATCGAGTTCTGAACATCCGC‑GATGTTCAGGCCGTAGCGTGCTGCTTTTTCGCGGTCAATGTTGATGGTCAGCACCGGCAGGCCGGATGTCTGCTCAACTTTCACTTCCGATGAGCCCGGGACCg < 1:1542883/143‑1 (MQ=255) ccacccacGGCGATAGCGATCGAGTTCTGAACATCCGC‑GATGTTCAGGCCGTAGCGTGCTGCTTTTTCGCGGTCAATGTTGAt > 1:207428/1‑83 (MQ=255) ccacccacGGCGATAGCGATCGAGTTCTGAACATCCGC‑GATGTTCAGGCCGTAGCGTGCTGCTTTTTCGCGGTCAATGTTGAt < 2:207428/83‑1 (MQ=255) ccacGGCGATAGCGATCGAGTTCTGAACATCCGC‑GATGTTCa > 1:1740597/1‑42 (MQ=255) ccacGGCGATAGCGATCGAGTTCTGAACATCCGC‑GATGTTCAGGCCGTAGCGTGCTGCTTTTTCGCGGTCAATGTTGATGGTCAg < 2:1457071/85‑1 (MQ=255) ccacGGCGATAGCGATCGAGTTCTGAACATCCGC‑GATGTTCAGGCCGTAGCGTGCTGCTTTTTCGCGGTCAATGTTGATGGTCAGCACCGGCAGGCCGGATGTCTGCTCAACTTTCACTTc < 1:885114/121‑1 (MQ=255) ccacGGCGATAGCGATCGAGTTCTGAACATCCGC‑GATGTTCAGGCCGTAGCGTGCTGCTTTTTCGCGGTCAATGTTGATGGTCAGCACCGGCAGGCCGGATGTCTGCTCAACTTTCACTTc > 2:885114/1‑121 (MQ=255) ccacGGCGATAGCGATCGAGTTCTGAACATCCGC‑GATGTTCAGGCCGTAGCGTGCTGCTTTTTCGCGGTCAATGTTGATGGTCAGCACCGGCAGGCCGGATGTCTGCTCAACTTTCACTTCCGATGAGCCCGGGACCGCTTTGAGCGCTg > 1:459874/1‑150 (MQ=255) aTAGCGATCGAGTTCTGAACATCCGC‑GATGTTCAGGCCGTAGCGTGCTGCTTTTTCGCGGTCAATGTTGATGGTCAGCACCGGCAGGCCGGATGTCTGCTCAACTTTCACTTCCGATGAGCCCGGGAc > 1:2291087/1‑128 (MQ=255) aTAGCGATCGAGTTCTGAACATCCGC‑GATGTTCAGGCCGTAGCGTGCTGCTTTTTCGCGGTCAATGTTGATGGTCAGCACCGGCAGGCCGGATGTCTGCTCAACTTTCACTTCCGATGAGCCCGGGAc < 2:2291087/128‑1 (MQ=255) aTCGAGTTCTGAACATCCGC‑GATGTTCAGGCCGTAGCGTGCTGCTTTTTCGCGGTCAATGTTGATGGTCAGCACCGGCAGGCCGGATGTCTGCTCAACTTTCACTTCCGATGAGCCCGGGACCGCTTTGAGCGCTGCCGCGATCttgttg > 2:2272696/1‑150 (MQ=255) tCGAGTTCTGAACATCCGC‑GATGTTCAGGCCGTAGCGTGCTGCTTTTTCGCGGTCAATGTTGATGGTCAGCACCGGCAGGCCGGATGTCTGCTCAACTTTCACTTCCGATGa < 2:1863710/112‑1 (MQ=255) tCGAGTTCTGAACATCCGC‑GATGTTCAGGCCGTAGCGTGCTGCTTTTTCGCGGTCAATGTTGATGGTCAGCACCGGCAGGCCGGATGTCTGCTCAACTTTCACTTCCGATGAGCCCGGGACCGCTTTGAGCGCTGCCGCGATCtt < 2:8147/145‑1 (MQ=255) tCGAGTTCTGAACATCCGC‑GATGTTCAGGCCGTAGCGTGCTGCTTTTTCGCGGTCAATGTTGATGGTCAGCACCGGCAGGCCGGATGTCTGCTCAACTTTCACTTCCGATGAGCCCGGGACCGCTTTGAGCGCTGCCGCGATCtt > 1:8147/1‑145 (MQ=255) tCGAGTTCTGAACATCCGC‑GATGTTCAGGCCGTAGCGTGCTGCTTTTTCGCGGTCAATGTTGATGGTCAGCACCGGCAGGCCGGATGTCTGCTCAACTTTCACTTCCGATGAGCCCGGGACCGCTTTGAGCGCTGCCGCGATCTTGTTgg < 1:1529661/150‑1 (MQ=255) tacggccTGAACAT‑CGCGGATGTTCAGGCCGTAGCGTGCTGCTTTTTCGCGGTCAATGTTGATGGTCAGCACCGGCAGGCCGGATGTCTGCTCAACTTTCACTTCCGATGAGCCCGGGACCGCTTTGAGCGCTGCCGCGATCTTGTTGGc > 2:12835/7‑150 (MQ=255) cGAGTTCTGAACATCCGC‑GATGTTCATGCCGTAGCGTGCTGCTTTTTCGCGGTCAATGTTGATGGTCAGCACCGGGAGGCCGGATGTCTGCTCAACTTTCACTTCCGATGAGCCCGGCACCGCTTTGAGCGCTGCCGCGATCTTGTTGGc < 2:37956/150‑1 (MQ=255) gAGTTCTGAACATCCGC‑GATGTTCAGGCCGTAGCGTGCTGCTTTTTCGCGGTCAATGTTGATGGTCAGCACCGGCAGGCCGGATGTCTGCTCAACTTTCACTTCCGATGAGCCCGGGACCGCTTTGAg < 2:1631623/128‑1 (MQ=255) gAGTTCTGAACATCCGC‑GATGTTCAGGCCGTAGCGTGCTGCTTTTTCGCGGTCAATGTTGATGGTCAGCACCGGCAGGCCGGATGTCTGCTCAACTTTCACTTCCGATGAGCCCGGGACCGCTTTGAg > 1:1631623/1‑128 (MQ=255) gAGTTCTGAACATCCGC‑GATGTTCAGGCCGTAGCGTGCTGCTTTTTCGCGGTCAATGTTGATGGTCAGCACCGGCAGGCCGGATGTCTGCTCAACTTTCACTTCCGATGAGCCCGGGACCGCTTTGAGCGCTGCCGCGCTCTTGTTAGCg < 2:644924/150‑1 (MQ=255) gAGTTCTGAACATCCGC‑GATGTTCAGGCCGTAGCGTGCTGCTTTTTCGCGGTCAATGTTGATGGTCAGCACCGGCAGGCCGGATGTCTGCTCAACTTTCACTTCCGATGAGCCCGGGACCGCTTTGAGCGCTGCCGCGATCTTGTTGGCg < 1:1597649/150‑1 (MQ=255) gAGTTCTGAACATCCGC‑GATGTTCAGGCCGTAGCGTGCTGCTTTTTCGCGGTCAATGTTGATGGTCAGCACCGGCAGGCCGGATGTCTGCTCAACTTTCACAGTTGTGGAGCCCGGGACCGCTTTGAGCGCTGCCGCGATCTTGTTGGCg > 1:1467636/1‑150 (MQ=255) ggccTGAACATCGCG‑GATGTTCAGGCCGTAGCGTGCTGCTTTTTCGCGGTCAATGTTGATGGTCAGCACCGGCAGGCCGGATGTCTGCTCAACTTTCACTTCCGATGAGCCCGGGACCGCTTTGAGCGCTGCCGCGATCTTGTTGGCGgt < 1:12835/147‑1 (MQ=255) gTTCTGAACATCCGC‑GATGTTCAGGCCGTAGCGTGCTGCTTTTTCGCGGTCAATGTTGATGGTCAGCACCGGCAGGCCGGATGTCTGCTCAACTTTCACTTCCGATGAGCCCGGGACCGCTTTGAGCGCTGCCGCGATCTTGTTGGCGgt < 2:1599611/150‑1 (MQ=255) ttCTGAACATCCGC‑GATGTTCAGGCCGTAGCGTGCTGCTTTTTCGCGGTCAATGTTGATGGTCAGCACCGGCAGGCCGGATGTCTGCTCAACTTTCACTTCCGATGAGCCCGGGACCGCt > 2:15475/1‑120 (MQ=255) ttCTGAACATCCGC‑GATGTTCAGGCCGTAGCGTGCTGCTTTTTCGCGGTCAATGTTGATGGTCAGCACCGGCAGGCCGGATGTCTGCTCAACTTTCACTTCCGATGAGCCCGGGACCGCt < 1:15475/120‑1 (MQ=255) gccTGAACAT‑CGCGGATGTTCAGACCGTAGCGTGCTGCTTTTTCGCGGTCAATGTTGATGGTCAGCACCGGCAGGCCGGATGTCt < 1:2086665/83‑1 (MQ=38) gccTGAACAT‑CGCGGATGTTCAGACCGTAGCGTGCTGCTTTTTCGCGGTCAATGTTGATGGTCAGCACCGGCAGGCCGGATGTCt > 2:2086665/3‑85 (MQ=38) ccTGAACAT‑CGCGGATGTTCAGGCCGTAGCGTGCTGCTTTTTCGCGGTCAATGTTGATGGTCAGCACCGGCAGGCCGGa < 2:2121328/78‑1 (MQ=38) ccTGAACAT‑CGCGGATGTTCAGGCCGTAGCGTGCTGCTTTTTCGCGGTCAATGTTGATGGTCAGCACCGGCAGGCCGGa > 1:2121328/2‑79 (MQ=38) cTGAACATCGCG‑GATGTTCAGGCCGTAGCGTGCTGCTTTTTCGCGGTCAATGTTGATGGTCAGCACCGGCAGGCCGGATGTCTGCTCAACTTTCACTTCCGATGAGCCCGGGa < 1:1056657/113‑1 (MQ=255) cTGAACATCGCG‑GATGTTCAGGCCGTAGCGTGCTGCTTTTTCGCGGTCAATGTTGATGGTCAGCACCGGCAGGCCGGATGTCTGCTCAACTTTCACTTCCGATGAGCCCGGGACCGCTTTGAGCGCTGCCGCGATCTTGTTGGCGgt < 1:1407068/147‑1 (MQ=255) cTGAACATCGCG‑GATGTTCAGGCCGTAGCGTGCTGCTTTTTCGCGGTCAATGTTGATGGTCAGCACCGGCAGGCCGGATGTCTGCTCAACTTTCACTTCCGATGAGCCCGGGACCGCTTTGAGCGCTGCCGCGATCTTGTTGGCGGtgtt > 2:1051120/1‑150 (MQ=255) cTGAACATCCGC‑GATGTTCAGGCCGTAGCGTGCTGCTTTTTCGCGGTCAATGTTGATGGTCAGCACCGGCAGGCCGGATGTCTGCTCAACTTTCACTTCCGATGAGCCCGGGACCGCTTTGAGCGCTGCCGCGATCTTGTTGGCGGtgtt < 1:800041/150‑1 (MQ=255) cTGAACAT‑CGCGGATGTTCAGGCCGTAGCGTGCTGCTTTTTCGCGGTCAATGTTGATGGTCAGCACCGGCAGGCCGGATGTCTGCTCAACTTTCACTTCCGATGAGCCCGGGa > 2:1056657/1‑113 (MQ=255) cTGAACAT‑CGCGGATGTTCAGGCCGTAGCGTGCTGCTTTTTCGCGGTCAATGTTGATGGTCAGCACCGGCAGGCCGGATGTCTGCTCAACTTTCACTTCCGATGAGCCCGGGACCGCTTTGAGCGCTGCCGCGATCTTGTTGGCGgt > 2:1407068/1‑147 (MQ=255) aCATCCGC‑GATGTTCAGGCCGTAGCGTGCTGCTTTTTCGCGGTCAATGTTGATGGTCAGCACCGGCAGGCCGGAt > 1:1040885/1‑75 (MQ=255) aCATCCGC‑GATGTTCAGGCCGTAGCGTGCTGCTTTTTCGCGGTCAATGTTGATGGTCAGCACCGGCAGGCCGGAt < 2:1040885/75‑1 (MQ=255) cATCCGC‑GATGTTCAGGCCGTAGCGTGCTGCTTTTTCGCGGTCAATGTTGATGGTCAGCACCGGCAGGCCGGATGTCTGCTCAACTTTCGCTTCCGATGAGCCCGGGACCGCTTTGAGCGCTGCCGCGATCTTGTTGGCGGTGTTGTTGa < 1:581052/150‑1 (MQ=255) cATCCGC‑GATGTTCAGGCCGTAGCGTGCTGCTTTTTCGCGGTCAATGTTGATGGTCAGCACCGGCAGGCCGGATGTCTGCTCAACTTTCACTTCCGATGAGCCCGGGACCGCTTTGAGCGCTGCCGCGATCTTGTTGGCGGTGTTGTTGa < 1:625754/150‑1 (MQ=255) cgc‑gATGTTCAGGCCGTAGCGTGCTGCTTTTTCGCGGTCAATGTTGATGGTCAGCACCGGCAGGCCGGa > 2:2075032/1‑69 (MQ=255) gc‑gATGTTCAGGCCGTAGCGTGCTGCTTTTTCGCGGTCAATGTTGATGGTCAGCACCGGCAGGCCGGATGTCTGCTCAACTTTCACTTCCGATGAGCCCGGGACCGCTTTGAGCGCTGCCGCGATCTTGTTGGCGGTGTTGTTGAGCACg > 1:1197411/1‑150 (MQ=255) | TACCGGGATCAGCAAGCTGGACATACCCGCTACGTCGGTGCGAACGGTCTCTGGTAGGCGTACTACCATGTCGAACCGACGGTCGCCCTCATACAGCGTGCCGGCCTGACGGCCACCCACGGCGATAGCGATCGAGTTCTGAACATCCGC‑GATGTTCAGGCCGTAGCGTGCTGCTTTTTCGCGGTCAATGTTGATGGTCAGCACCGGCAGGCCGGATGTCTGCTCAACTTTCACTTCCGATGAGCCCGGGACCGCTTTGAGCGCTGCCGCGATCTTGTTGGCGGTGTTGTTGAGCACG > NC_002947/46993‑47290 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |