| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 5,867,789:1 | +C | 16.8% | intergenic (‑28/+24) | thyA ← / ← lgt | thymidylate synthase/prolipoprotein diacylglyceryl transferase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,867,789 | 1 | . | C | 16.8% | 304.5 / 70.0 | 101 | intergenic (‑28/+24) | thyA/lgt | thymidylate synthase/prolipoprotein diacylglyceryl transferase |
| Reads supporting (aligned to +/- strand): ref base . (39/45); new base C (9/8); total (48/53) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.91e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.84e-01 | |||||||||||
Only 100 of 103 total aligned reads displayed.
CCCTTCTGCAGGTCGAAACGCAGCATCGCGCCCGGCAGGCTGATGGTGCGGATGCCGGTGCGGTTTCCCTGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGAATGCACAGCAACTGGCCTTGAGTGAGCCAGCCGAACGCGATGTAACCGAGTT > NC_002947/5867640‑5867937 | cccTTCTGCAGGTCGAAACGCAGCATCGCGCCCGGCAGGCTGATGGTGCGGATGCCGGTGCGGTTTCCCTGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAgggg > 1:2313290/1‑150 (MQ=255) cTTCTGCAGGTCGAAACGCAGCATCGCGCCCGGCAGGCTGATGGTGCGGATGCCGGTGCGGTTTCCCTGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑Ga > 1:2168541/1‑150 (MQ=255) cTGCAGGTCGAAACGCAGCATCGCGCCCGGCAGGCTGATGGTGCGGATGCCGGTGCGGTTTCTCTGCAACGTGCCGTTATTAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCg < 1:463966/150‑1 (MQ=255) ggTCGAAACGCAGCATCGCGACCGGCAGGCTGATAGTGCGGATGCCGGTGCGGTTTCACTGCAACGTGCCGTTATCAATGACGTTGCGGATCAAGTCCAGATACTTTTTCATGGATAACAAGTAAAAAAAACGGCAGGGG‑GATCGCCCCt < 2:1032192/150‑1 (MQ=255) gTCGAAACGCAGCATCGCGCCCGGCAGGCTGATGGTGCGGATGCCGGTGCGGTTTCCCTGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTg > 2:1033740/1‑150 (MQ=255) cGAAACGCAGCATCGCGCCCGGCAGGCTGATGGTGCGGATGCCGGTGCGGTTTCCCTGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGGCGATC‑CCCCTGcc < 2:169534/150‑1 (MQ=255) cGAAACGCAGCATCGCGCCCGGCAGGCTGATGGTGCGGATGCCGGTGCGGTTTCCCTGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGGCGATC‑CCCCTGcc < 2:2313290/150‑1 (MQ=255) cGAAACGCAGCATCGCGCCCGGCAGGCTGATGGTGCGGATGCCGGTGCGGTTTCCCTGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGcc < 2:2175148/150‑1 (MQ=255) aaaCGCAGCATCGCGCCCGGCAGGCTGATGGTGCGGATGCCGGTGCGGTTTCCCTGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGt > 1:1487569/1‑150 (MQ=255) aCGCAGCATCGCGCCCGGCAGGCTGATGGTGCGGATGCCGGTGCGGTTTCCCTGCAACTTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTgg < 1:1033740/150‑1 (MQ=255) cGCAGCATCGCGCCCGGCAGGCTGATGGTGCGGATGCCGGTGCGGTTTCCCTGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGGCGATC‑CCCCTGCCGtttt < 1:256595/150‑4 (MQ=255) caTCGCGCCCGGCAGGCTGATGGTGCGGATGCCGGTGCGGTTTCCCTGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGGCGATC‑CCCCTGCCGttttt > 2:86224/1‑142 (MQ=255) caTCGCGCCCGGCAGGCTGATGGTGCGGATGCCGGTGCGGTTTCCCTGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGGCGATC‑CCCCTGCCGttttt < 1:86224/146‑5 (MQ=255) aTCGCGCCCGGCAGGCTGATGGTGCGGATGCCGGTGCGGTTTCCCTGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAAt < 1:2235477/150‑1 (MQ=255) gcCCGGCAGGCTGATGGTGCGGATGCCGGTGCGGTTTCCCTGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGc < 1:129690/150‑1 (MQ=255) ccGGCAGGCTGATGGTGCGGATGCCGGTGCGGTTTAACTCTAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCgg < 2:2372722/150‑1 (MQ=255) cAGGCTGATGGTGCGGATGCCGGTGCGGTTTCCCTGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGttt > 1:1798004/1‑150 (MQ=255) gCTGATGGTGCGGATGCCGGTGCGGTTTCCCTGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGc > 1:1212694/1‑150 (MQ=255) cTGATGGTGCGGATGCCGGTGCGGTTTCCCTGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGcc < 2:1212694/150‑1 (MQ=255) aTGGTGCGGATGCCGGTGCGGTTTCCCTGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTa < 1:274593/150‑1 (MQ=255) gCGGATGCCGGTGCGGTTTCCCTGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCtt < 2:2206121/150‑1 (MQ=255) tGCGGGTGCGGTTTCCCTGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGTCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGAt < 2:458783/150‑1 (MQ=255) gTGCGGTTTCCCTGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCTGGCGGGTTTCGCCGTAGGCTTGCGATTATaa < 2:1487569/150‑1 (MQ=255) tGCGGTTTCCCTGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAg < 1:26197/150‑1 (MQ=255) gCGGTTTCCCTGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGc < 2:2168541/150‑1 (MQ=255) gTTTCCCTGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATaaacaaa > 2:11447/1‑145 (MQ=255) gTTTCCCTGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCCTACCTGCAGCAAACACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAACCcca > 1:91846/1‑150 (MQ=255) ttCCCTGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGt > 1:1518918/1‑101 (MQ=255) ttCCCTGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCccacc > 1:1827137/1‑150 (MQ=255) tCCCTGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCccacca < 2:1213759/150‑1 (MQ=255) ccTGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGa > 2:2039107/1‑150 (MQ=255) cTGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGa > 1:2058089/1‑149 (MQ=255) cTGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGa < 2:2058089/149‑1 (MQ=255) tGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATc < 2:1488547/150‑1 (MQ=255) tGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATc > 1:2397403/1‑150 (MQ=255) gCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGt > 1:1102006/1‑95 (MQ=255) gCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGt < 2:1102006/95‑1 (MQ=255) gCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGcccc < 2:2029547/82‑1 (MQ=255) gCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGcccc > 1:2029547/1‑82 (MQ=255) gCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAg < 2:1827137/150‑1 (MQ=255) ccGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGAAAAAATGGCAGGGG‑GATCGTCCTTTCCGTGGGAATAACCATTCGAGTTTCTCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAgg < 2:337070/150‑1 (MQ=255) ttATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAg < 2:588109/112‑1 (MQ=255) ttATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAg > 1:588109/1‑112 (MQ=255) aaTGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTgg > 2:220724/1‑81 (MQ=255) aaTGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTgg < 1:220724/81‑1 (MQ=255) aaTGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGAc < 1:1516923/150‑1 (MQ=255) aaTGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGAc > 1:1589859/1‑150 (MQ=255) aTGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCg > 2:1235654/1‑100 (MQ=255) aTGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCg < 1:1235654/100‑1 (MQ=255) tGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGGAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTa > 1:211836/1‑150 (MQ=255) gTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTatcat < 1:2039107/150‑1 (MQ=255) gACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGAAt > 1:389249/1‑150 (MQ=255) gTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGa > 1:108041/1‑122 (MQ=255) gTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGa < 2:108041/122‑1 (MQ=255) gTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGAATGCACAg > 1:1934733/1‑150 (MQ=255) tCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGAATGCACAGc > 1:690324/1‑150 (MQ=255) aGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCt < 1:1305323/52‑1 (MQ=255) aGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCt > 2:1305323/1‑52 (MQ=255) gATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAg > 2:886372/1‑99 (MQ=255) gATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAg < 1:886372/99‑1 (MQ=255) aTACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGAATGCACAGCAACTg < 2:389249/150‑1 (MQ=255) ttCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGAATGCACAGCAACTGGCCTtga < 2:690324/150‑1 (MQ=255) ttCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGAATGCACAGCAACTGGCCTtga < 2:2397403/150‑1 (MQ=255) tGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGccc < 2:2134108/37‑1 (MQ=255) tGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGccc > 1:2134108/1‑37 (MQ=255) tGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTg < 1:1893081/45‑1 (MQ=255) tGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTg > 2:1893081/1‑45 (MQ=255) tGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGAATGCACATCAACTGGCCTtgagtga < 1:11447/150‑1 (MQ=255) ttACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATaa < 2:478753/82‑1 (MQ=255) ttACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATaa > 1:478753/1‑82 (MQ=255) aCCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGAATGCACAGCAACTGGCCTTGAGTGagccagc > 2:2396814/1‑150 (MQ=255) cTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGNGATTAATCANGCGGATTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGCTCAAGACGAGGCCACCGACTAGCATCGTCATGCACAGCAACTGGCCTTGAGTGAGCccgccg > 1:1001545/1‑150 (MQ=255) cTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATAGGAATGCACAGCAACTGGCGTTGAGTGAGCCAGCCg > 1:351929/1‑150 (MQ=255) gCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGc < 1:612486/75‑1 (MQ=255) gCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGc > 2:612486/1‑75 (MQ=255) gCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGa < 1:603387/83‑1 (MQ=255) gCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGa > 2:603387/1‑83 (MQ=255) cAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGAATGCACAGCAACTGGCCTTGAGTGAGCCAGCCGAAcgcg > 2:2254290/1‑150 (MQ=255) tcccaCGGCAGGGGCGATC‑CCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGAATGCACAGCAACTGGCCTTGAGTGAGCCAGCCGAACGCGa > 1:1199815/5‑150 (MQ=255) aaaaaCGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGAATGCACAGCAACTGGCCTTGAGTGAGCCAGCCGAACGCGa < 1:766107/150‑1 (MQ=255) cccaCGGCAGGGGCGATC‑CCCCTGCCGTGGGCTTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCACAACAGCTCAAGACGAGGCCACCGACTATCATCGGAATGCACAGCAACTGGCCTTGAGTGAGCCAGCCGAACGCGAt > 1:1857014/4‑150 (MQ=255) aaaaCGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCg < 1:198768/107‑1 (MQ=255) aaaaCGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCg > 2:198768/1‑107 (MQ=255) ccaCGGCAGGGGCGATC‑CCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGAATGCACAGCAACTGGCCTtgagtga < 1:1026781/131‑1 (MQ=255) ccaCGGCAGGGGCGATC‑CCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGAATGCACAGCAACTGGCCTtgagtga > 2:1026781/3‑133 (MQ=255) ccaCGGCAGGGGCGATC‑CCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGAATGCACAGCAACTGGCCTTGAGTGAGCCAGCCGAACGCGATg > 2:1215484/3‑150 (MQ=255) caCGGCAGGGGCGATCG‑CCCTGCCGTGGGATTAATCAGGAGGGAATGTTCGTAGGCTTGCGATTATAAGCCCCCCAGATCAAGACGAGGCCACCGACTATCATCGGAATGCACAGCAACTGGCCTTGAGTGAGCCAGCCGAACGCGATGt > 2:695768/2‑150 (MQ=255) caCGGCAGGGGCGATC‑CCCCTTCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCAACAGATCAAGACGAGGCCACCGACTATCATCGGAATGCACAGCAACTGGCCTTGAGTGGGCCAGACGAACGCGATGt > 2:720751/2‑150 (MQ=255) caCGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGa > 2:1210857/2‑78 (MQ=255) caCGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGa < 1:1210857/77‑1 (MQ=255) caCGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGAATGCACAGCAACTGGCCTTGAGTGAGCCAGCCGAACGCGATGt > 2:2040059/2‑150 (MQ=255) aCGGCAGGGGCGATC‑CCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGAATGCACAGCAACTGGCCTTGAGTGAGCCAGCCGAACGCGATGt > 2:1764368/1‑149 (MQ=255) aCGGCAGGGGCGATC‑CCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGAATGCACAGCAACTGGCCTTGAGTGAGCCAGCCGAACGCGATGt < 1:1764368/149‑1 (MQ=255) ggCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGAATGCACAGCAACTGGCCTTGAGTGAGCCAGCCGAACGCGATGTAAc < 1:2396814/150‑1 (MQ=255) gCAGGGGCGATC‑CCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGAATGCACAGCAACTGGCCTtga < 2:122747/124‑1 (MQ=255) gCAGGGGCGATC‑CCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGAATGCACAGCAACTGGCCTtga > 1:122747/1‑124 (MQ=255) aGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGaa > 2:1630932/1‑102 (MQ=255) aGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGaa < 1:1630932/102‑1 (MQ=255) aGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGAATGCACAGCAACTGGCCTTGAGTGAGCCAGCCGAACGCGATGTAACCGa < 2:1798004/150‑1 (MQ=255) gg‑gATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGAATGCACAGCAACTGGCCTTGAGTGAGCCAGCCGAACGCGATGTAACCGAGtt > 2:1128239/1‑150 (MQ=255) | CCCTTCTGCAGGTCGAAACGCAGCATCGCGCCCGGCAGGCTGATGGTGCGGATGCCGGTGCGGTTTCCCTGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGAATGCACAGCAACTGGCCTTGAGTGAGCCAGCCGAACGCGATGTAACCGAGTT > NC_002947/5867640‑5867937 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |