Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 557,339:1 +A 6.9% intergenic (+79/‑130) rpsN → / → rpsH 30S ribosomal protein S14/30S ribosomal protein S8

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_002947557,3391.A 6.9% 461.7 / 26.5 116intergenic (+79/‑130)rpsN/rpsH30S ribosomal protein S14/30S ribosomal protein S8
Reads supporting (aligned to +/- strand):  ref base . (49/59);  new base A (4/4);  total (53/63)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.92e-01

Only 100 of 123 total aligned reads displayed.

GGCCGTAACATGCTGCGTCAAGCTGCAATGCGCGGTGACGTACCAGGTCTGGTCAAGGCCTCCTGGTAATCGCTGCAGGCAAGGCGCGGGTGGAAGGGGAGCAATCTTCCGACC‑GCCGG‑TGACCTTGCCAACAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGTTTTTGCCCAAACGGTTCGGGTGGTTGTCATAGCCGCAAGGCTAATAATTCTTGTATCAGGAGCATCTAGCCCATGAGTATGCAGGACCCGTT  >  NC_002947/557192‑557488
                                                                                                                                                      |                                                                                                                                                     
ggacGTAACATGCTGCGTCAAGCTGCAATGCGCGGTGACGTACCAGGTCTGGTCAAGGCCTCCTGGTAATCGCTGCAGGCACGGCGCGGGTGGAAGGGGAGCAATCTTCCGACC‑GCCGG‑TGACCTTGCCAACAAACAAGCCCCTATAT‑gg                                                                                                                                                     <  1:661074/147‑1 (MQ=255)
     tAACATGCTGCGTCAAGCTGCAATGCGCGGTGACGTACCAGGTCTGGTCAAGGCCTCCTGGTAATCGCTGCAGGCAAGGCGCGGGTGGAAGGGGAGCAATCTTCCGACC‑GCCGG‑TGACCTTGCCAACAAACAAGCCCCTATAT‑GGGGCtt                                                                                                                                                <  1:578272/150‑1 (MQ=255)
      aaCATGCTGCGTCAAGCTGCAATGCGCGGTGACGTACCAGGTCTGGTCAAGGCCTCCTGGTAATCGCTGCAGGCAAGGCGCGGGTGGAAGGGGAGCAATCTTCCGACC‑GCCGG‑TGACCTTGCCAACAAACAAGCCCCTATAT‑GGGGCTTg                                                                                                                                               <  1:362905/150‑1 (MQ=255)
      aaCATGCTGCGTCAAGCTGCAATGCGCGGTGACGTACCAGGTCTGGTCAAGGCCTCCTGGTAATCGCTGCAGGCAAGGCGCGGGTGGAAGGGGAGCAATCTTCCGACC‑GCCGG‑TGACCTTGCCAACAAACAAGCCCCTATAT‑GGGGCTTg                                                                                                                                               <  2:107129/150‑1 (MQ=255)
      aaCATGCTGCGTCAAGCTGCAATGCGCGGTGACGTACCAGGTCTGGTCAAGGCCTCCTGGTAATCGCTGCAGGCAAGGCGCGGGTGGAAGGGGAGAGATCTTCCGACC‑GCCGG‑TGACCTTGCCAACAAACAAGCCCC‑ATATAGGGGCTTg                                                                                                                                               <  1:783818/150‑1 (MQ=255)
       aCATGCTGCGTCAAGCTGCAATGCGCGGTGACGTACCAGGTCTGGTCAAGGCCTCCTGGTAATCGCTGCAGGCAAGGCGCGGGTGGAAGGGGAGCAATCTTCCGACC‑GCCGG‑TGACCTTGCCAACAAACAAGCCCCTATAT‑GGGGCTTgt                                                                                                                                              <  1:1256719/150‑1 (MQ=255)
       aCATGCTGCGTCAAGCTGCAATGCGCGGTGACGTACCAGGTCTGGTCAAGGCCTCCTGGTAATCGCTGCAGGCAAGGCGCGGGTGGAAGGGGAGCAATCTTCCGACC‑GCCGG‑TGACCTTGCCAACAAACAAGCCCCTATAT‑GGGGCTTgt                                                                                                                                              <  1:1736020/150‑1 (MQ=255)
          tgctgcGTCAAGCTGCAATGCGCGGTGACGTACCAGGTCTGGTCAAGGCCTCCTGGTAATCGCTGCAGGCAAGGCGCGGGTGGAAGGGGAGCAATCTTCCGACC‑GCCGG‑TGACCTTGCCAACAAACAAGCCCCTATAT‑GGGGCTTgtttc                                                                                                                                           <  2:1965184/150‑1 (MQ=255)
            ctgcGTCAAGCTGCAATGCGCGGTGACGTACCTGGTCTGGTCAAGGCCTCCTGGTCATCGCTGCAGGCAAGGCCCGGGTGGAAGGGGAGCAATCTTCCGACC‑GCCGG‑TGACCTTGCCAACAAACAAGCCCCTATAT‑GGGGCTTgtttcgt                                                                                                                                         <  2:2077236/150‑1 (MQ=255)
              gcGTCAAGCTGCAATGCGCGGTGACGTACCAGGTCTGGTCAAGGCCTCCTGGTAATCGCTGCAGGCAAGGCGCGGGTGGAAGGGGAGCAATCTTCCGACC‑GCCGG‑TGACCTTGCCAACAAACAAGCCCCTATAT‑GGGGCTTgtttcgttt                                                                                                                                       <  2:777950/150‑1 (MQ=255)
                gTCAAGCTGCAATGCGCGGTGACGTACCAGGTCTGGTCAAGGCCTCCTGGTAATCGCTGCAGGCAAGGCGCGGGTGGAAGGGGAGCAATCTTCCGACC‑GCCGG‑TGACCTTGCCAACAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCt                                                                                                                                     >  1:906010/1‑150 (MQ=255)
                gTCAAGCTGCAATGCGCGGTGACGTACCAGGTCTGGTCAAGGCCTCCTGGTAATCGCTGCAGGCAAGGCGCGGGTGGAAGGGGAGCAATCTTCCGACC‑GCCGG‑TGACCTTGCCAACAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCt                                                                                                                                     >  1:920280/1‑150 (MQ=255)
                  cAAGCTGCAATGCGCGGTGACGTACCAGGTCTGGTCAAGGCCTTCTGGTAATCGCTGCAGGCAAGGCGCGGGTGGAAGGGGAGCAATCTTCCGACC‑GCCGG‑TGACCTTGCCAACAAACAAGCCCCTATCT‑GGTGCTTGTTTCGTTTCTGc                                                                                                                                   <  2:101629/150‑1 (MQ=255)
                   aaGCTGCAATGCGCGGTGACGTACCAGGTCTGGTCAAGGCCTCCTGGTAATCGCTGCAGGCAAGGCGCGGGTGGAA‑‑GCAGGTGTCGTTCGTCCGGCAGGCTTGCCAGGCGAAGAAACAAGCCCCTATAT‑GGGGCTAGATTTGTTTCTGcc                                                                                                                                  >  1:891463/1‑150 (MQ=255)
                     gCTGCAATGCGCGGTGACGTACCAGGTCTGGTCAAGGCCTCCTGGTAATCGCTGCAGGCAAGGCGCGGGTGGAAGGGGAGCAATCTTCCGACC‑GCCGG‑TGACCTTGCCAACAAACAAGCCCCTATAT‑GGGGATTgtttcgtt                                                                                                                                        <  1:2333751/142‑1 (MQ=255)
                      cTGCAATGCGCGGTGACGTACCAGGTCTGGTCAAGGCCTCCTGGTAATCGCTGCAGGCAAGGCGCGGGTGGAAGGGGAGCAATCTTCCGACC‑GCCGG‑TGACCTTGCCAACAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTtg                                                                                                                               >  1:1511526/1‑150 (MQ=255)
                       tGCAATGCGCGGTGACGTACCAGGTCTGGTCAAGGCCTCCTGGTAATCGCTGCAGGCAAGGCGCGGGTGGAAGGGGAGCAATCTTCCGACC‑GCCGG‑TGACCTTGCCAACAAACAAGCCCCTATAT‑GGGGCTTTTTTCGTTTCTGCCTtgt                                                                                                                              <  2:1602339/150‑1 (MQ=255)
                       tGCAATGCGCGGTGACGTACCAGGTCTGGTCAAGGCCTCCTGGTAATCGCTGCAGGCAAGGCGCGGGTGGAAGGGGAGCAATCTTCCGACC‑GCCGG‑TGACCTTGCCAACAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTtgt                                                                                                                              <  2:2157553/150‑1 (MQ=255)
                            tGCGCGGTGACGTACCAGGTCTGGTCAAGGCCTCCTGGTAATCGCTGCAGGCAAGGCGCGGGTGGAAGGGGAGCAATCTTCCGACC‑GCCGG‑TGACCTTGCCAACAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTa                                                                                                                         >  2:537244/1‑150 (MQ=255)
                                  gTGACGTACCAGGTCTGGTCAAGGCCTCCTGGTAATCGCTGCAGGCAAGGCGTGGGTGGAAGGGGAGCAATCTTCCGACC‑GCCGG‑TGACCTTGCCAACCTCTAGGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGa                                                                                                                   <  1:1642387/150‑1 (MQ=255)
                                   tGACGTACCAGGTCTGGTCAAGGCCTCCTGGTAATCGCTGCAGGCAAGGCGCGGGTGGAAGGGGAGCAATCTTCCGACC‑GCCGG‑TGACCTTGCCAACAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGAc                                                                                                                  <  1:2170171/150‑1 (MQ=255)
                                    gACGTACCAGGTCTGGTCAAGGCCTCCTGGTAATCGCTGCAGGCAAGGCGCGGGTGGAAGGGGAGCAATCTTCCGACC‑GCCGG‑TGACCTTGCCAACAAACAAGACCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGAcc                                                                                                                 >  2:1517809/1‑150 (MQ=255)
                                     aCGTACCAGGTCTGGTCAAGGCCTCCTGGTAATCGCTGCAGGCAAGGCGCGGGTGGAAGGGGAGCAATCTTCCGACC‑GCCGG‑TGACCTTGCCAACAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCg                                                                                                                >  2:1995677/1‑150 (MQ=255)
                                       gTACCAGGTCTGGTCAAGGCCTCCTGGTAATCGCTGCAGGCAAGGCGCGGGTGGAAGGGGAGCAATCTTCCGACC‑GCCGG‑TGACCTTGCCAACAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGc                                                                                                              >  2:1858491/1‑150 (MQ=255)
                                            aGGTCTGGTCAAGGCCTCCTGGTAATCGCTGCAGGCAAGGCGCGGGTGGAAGGGGAGCAATCTTCCGACC‑GCCGG‑TGACCTTGCCAACAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCAcc                                                                                                         >  2:2405463/1‑150 (MQ=255)
                                                 tGGTCAAGGCCTCCTGGTAATCGCTGCATGCAAGGCGCGGGTGGAAGGGGAGCAATCTTCCGACC‑GCCGG‑TGACCTTGCCAACAAACAAGCCCC‑ATATAGGGGCt                                                                                                                                                 >  1:1777627/1‑105 (MQ=255)
                                                 tGGTCAAGGCCTCCTGGTAATCGCTGCATGCAAGGCGCGGGTGGAAGGGGAGCAATCTTCCGACC‑GCCGG‑TGACCTTGCCAACAAACAAGCCCC‑ATATAGGGGCt                                                                                                                                                 <  2:1777627/105‑1 (MQ=255)
                                                   gTCAAGGCCTCCTGGTAATCGCTGCAGGCAAGGCGCGGGTGGAAGGGGAGCAATCTTCCGACC‑GCCGG‑TGACCTTGCCAACAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCt                                                                                                  >  2:383439/1‑150 (MQ=255)
                                                    tCAAGGCCTCCTGGTAATCGCTGCAGGCAAGGCGCGGGTGGAAGGGGAGCAATCTTCCGACC‑GCCGG‑TGACCTTGCCAACAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTg                                                                                                 >  1:1052934/1‑150 (MQ=255)
                                                      aaGGCCTCCTGGTAATCGCTGCAGGCAAGGCGCGGGTGGAAGGGGAGCAATCTTCCGACC‑GCCGG‑TGACCTTGCCAACAAACAAGCCCCTATAT‑gg                                                                                                                                                     >  1:301716/1‑96 (MQ=255)
                                                      aaGGCCTCCTGGTAATCGCTGCAGGCAAGGCGCGGGTGGAAGGGGAGCAATCTTCCGACC‑GCCGG‑TGACCTTGCCAACAAACAAGCCCCTATAT‑gg                                                                                                                                                     <  2:301716/96‑1 (MQ=255)
                                                          cctcctGGTAATCGCTGCAGGCAAGGCGCGGGTGGAAGGGGAGCAATCTTCCGACC‑GCCGG‑TGACCTTGCCAACAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGtttt                                                                                           >  1:821475/1‑150 (MQ=255)
                                                           ctcctGGTAATCGCTGCAGGCAAGGCGCGGGTGGAAGGGGAGCAATCTTCCGACC‑GCCGG‑TGACCTTGCCAACAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGttttt                                                                                          >  1:105144/1‑150 (MQ=255)
                                                           ctcctGGTAATCGCTGCAGGCAAGGCGCGGGTGGAAGGGGAGCAATCTTCCGACC‑GCCGG‑TGACCTTGCCAACAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGttttt                                                                                          <  1:1456414/150‑1 (MQ=255)
                                                            tcctGGTAATCGCTGCAGGCAAGGCGCGGGTGGAAGGGGAGCAATCTTCCGACC‑GCCGG‑TGACCTTGCCAACAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGTTTTTg                                                                                         >  2:1782548/1‑150 (MQ=255)
                                                             cctGGTAATCGCTGCAGGCAAGGCGCGGGTGGAAGGGGAGCAATCTTCCGACC‑GCCGG‑TGACCTTGCCAACAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGTTTTTGc                                                                                        <  1:951959/150‑1 (MQ=255)
                                                             cctGGTAATCGCTGCAGGCAAGGCGCGGGTGGAAGGGGAGCAATCTTCCGACC‑GCCGG‑TGACCTTGCCAACAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGTTTTTGc                                                                                        >  1:1765181/1‑150 (MQ=255)
                                                               tGGTAATCGCTGCAGGCAAGGCGCGGGTGGAAGGGGAGCAATCTTCCGACC‑GCCGG‑TGACCTTGCCAACAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGTTTTTGccc                                                                                      >  2:2145389/1‑150 (MQ=255)
                                                                  tAATCGCTGCAGGCAAGGCGCGGGTGGAAGGGGAGCAATCTTCCGACC‑GCCGG‑TGACCTTGCCAACAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGTTTTTGCCCaaa                                                                                   <  1:2287888/150‑1 (MQ=255)
                                                                    aTCGCTTCAGGCAAGGCGCGGGTGGAAGGGGAGCAATCTTCCGACC‑GCCGG‑TGACCTTGCCAACAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCt                                                                                                        <  1:2867/127‑1 (MQ=255)
                                                                    aTCGCTGCAGGCAAGGCGCGGGTGGAAGGGGAGCAATCTTCCGACC‑GCCGG‑TGACCTTGCCAACAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGTTTTTGCCCAAACg                                                                                 >  1:1144740/1‑150 (MQ=255)
                                                                     tCGCTGCAGGCAAGGCGCGGGTGGAAGGGGAGCAATCTTCCGACC‑GCCGG‑TGACCTTGCCAACAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGTTTTTGCCCAAACgg                                                                                >  2:548961/1‑150 (MQ=255)
                                                                       gCTGCAGGCAAGGCGCGGGTGGAAGGGGAGCAATCTTCCGACC‑GCCGG‑TGACCTTGCCAACAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGAc                                                                                                                  <  2:106881/114‑1 (MQ=255)
                                                                       gCTGCAGGCAAGGCGCGGGTGGAAGGGGAGCAATCTTCCGACC‑GCCGG‑TGACCTTGCCAACAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGAc                                                                                                                  >  1:106881/1‑114 (MQ=255)
                                                                        cTGCAGGCAAGGCGCGGGTGGAAGGGGAGCAATCTTCCGACC‑GCCGG‑TGACCTTGCCAACAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGc                                                                                                    <  2:1716213/127‑1 (MQ=255)
                                                                        cTGCAGGCAAGGCGCGGGTGGAAGGGGAGCAATCTTCCGACC‑GCCGG‑TGACCTTGCCAACAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGTTTTTGCCCAAACGGTTc                                                                             <  2:2355853/150‑1 (MQ=255)
                                                                         tGCAGGCAAGGCGCGGGTGGAAGGGGAGCAATCTTCCGACC‑GCCGG‑TGACCTTGCCAACAAACAAGCCCC‑ATATAGGGGCTTgtttgtt                                                                                                                                         >  1:664299/1‑86 (MQ=37)
                                                                          gCAGGCAAGGCGCGGGTGGAAGGGGAGCAATCTTCCGACC‑GCCGG‑TGACCTTGCCAACAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGTTTTTGCCCAAACGGTTCgg                                                                           <  1:460658/150‑1 (MQ=255)
                                                                             ggCAAGGCGCGGGTGGAAGGGGAGCAATCTTCCGACC‑GCCGG‑TGACCTTGCCAACAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGTTTTTGCCCAAACGGTTCGggtg                                                                        <  1:1995677/150‑1 (MQ=255)
                                                                                aaGGCGCGGGTGGAAGGGGAGCAATCTTCCGACC‑GCCGG‑TGACCTTGCCAACAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCCCACCTGAGCCTGGGTTTTTGCCCAAACGGTTCGGGTGGtt                                                                     >  1:1105912/1‑150 (MQ=255)
                                                                                aaGGCGCGGGTGGAAGGGGAGAAATCTTCCGACC‑GCCGG‑TGACCTTGACAACAAACAAGCCCATATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGACTGCCCGGGTCACCTGAGCCTGGGTTTTTGCCCAAACGGTTCGggtggtg                                                                     <  2:945916/150‑2 (MQ=255)
                                                                                 aGGCGCGGGTGGAAGGGGAGCAATCTTCCGACC‑GCCGG‑TGACCTTGCCAACAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGTTTTTGCCCAAACGGTTCGggtggt                                                                      <  1:436494/148‑1 (MQ=255)
                                                                                  ggCGCGGGTGGAAGGGGAGCAATCTTCCGACC‑GCCGG‑TGACCTTGCCAACAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGTTTTTGCCCAAACGGTTCGGGTGGTTGt                                                                   <  2:345212/150‑1 (MQ=255)
                                                                                  ggCGCGGGTGGAAGGGGAGCAATCTTCCGACC‑GCCGG‑TGACCTTGCCAACAAACAAGAACCTATAT‑GGGGCTTGTTTCGTTTCTGACTTGGGTCTAGTATGGCCGGCTCTGCTGAGCCTGGGTGTTTGCCCAAACGGTTCGGGTGGTTGt                                                                   <  2:275712/150‑1 (MQ=255)
                                                                                        ggTGGAAGGGGAGCAATCTTCCGACC‑GCCGG‑TGACCTTGCCAACAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGTTTTTGCCCAAACGGTTCGGGTGGTTGTCATAGc                                                             <  2:105144/150‑1 (MQ=255)
                                                                                          tGGAAGGGGAGCAATCTTCCGACC‑GCCGG‑TGACCTTGCCAACAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGTTTTTGCCCAAACGGTTCGGGTGGTTGTCATAGCCg                                                           <  2:1701146/150‑1 (MQ=255)
                                                                                            gAAGGGGAGCAATCTTCCGACC‑GCCGG‑TGACCTTGCCAACAAACAAGCCCCTATAT‑GGGGc                                                                                                                                                  <  2:540802/61‑1 (MQ=255)
                                                                                            gAAGGGGAGCAATCTTCCGACC‑GCCGG‑TGACCTTGCCAACAAACAAGCCCCTATAT‑GGGGc                                                                                                                                                  >  1:540802/1‑61 (MQ=255)
                                                                                             aaGGGGAGCAATCTTCCGACC‑GCCGG‑TGACCTTGCCAACAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGTTTTTGCCCAAACGGTTCGGGTGGTTGTCATAGCCGCaa                                                        <  2:906010/150‑1 (MQ=255)
                                                                                              aGGGGAGCAATCTTCCGACC‑GCCGG‑TGACCTTGCCAACAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGTTTTTTTTCTATTGGTTCGGGTGGTTGTCATAGCCGCAAg                                                       >  2:1798397/1‑150 (MQ=255)
                                                                                                 ggAGCAATCTTCCGACC‑GCCGG‑TGACCTTGCCAACAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGTTTTTGCCCAAACGGTTCGGGTGGTTGTCATAGCCGCAAGGCt                                                    >  2:1475153/1‑150 (MQ=255)
                                                                                                   aGCAATCTTCCGACC‑GCCGG‑TGACCTTGCCAACAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGTTTTTGCCCAAACGGTTCGGGTGGTTGTCATAGCCGCAAGGCtaa                                                  >  2:490625/1‑150 (MQ=255)
                                                                                                      aaTCTTCCGACC‑GCCGG‑TGACCTTGCCAACAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGTTTTTGCCCAAACGGTTCGGGTGGTTGTCATAGCCGCAAGGCtaataa                                               >  1:2018474/1‑150 (MQ=255)
                                                                                                          ttCCGACC‑GCCGG‑TGACCTTGCCAACAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGTTTTTGCCCaaa                                                                                   >  1:2072698/1‑110 (MQ=255)
                                                                                                          ttCCGACC‑GCCGG‑TGACCTTGCCAACAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGTTTTTGCCCAAACGGTTCGGGTGGTTGTCATAGCCGCAAGGCTAATAATTCt                                           <  1:18088/150‑1 (MQ=255)
                                                                                                           tCCGACC‑GCCGG‑TGACCTTGCCAACAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGTTTTTGCCCAAACGGTTCGGGTGGTTGTCATAGCCGCAAGGCTAATAATTCtt                                          <  2:1511526/150‑1 (MQ=255)
                                                                                                           tCCGACC‑GCCGG‑TGACCTTGCCAACAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGTTTTTGCCCAAACGGTTCGGGTGGTTGTCATAGCCGCAAGGCTAATAATTCtt                                          <  2:1765181/150‑1 (MQ=255)
                                                                                                           tCCGACC‑GCCGG‑TGACCTTGCCAACAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGTTTTTGCCCAAACGGTTCGGGTGGTTGTCATAGCCGCAAGGCTAATAATTCtt                                          <  2:1144740/150‑1 (MQ=255)
                                                                                                           tCCGACC‑CCCGG‑TGACCTTCCCAACAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGTTTTTGCCCAAACGGTTCGGGTGGTTGTCATAGCCGCAAGGCTAATAATTCtt                                          <  1:1192377/150‑1 (MQ=255)
                                                                                                            ccGACC‑GCTGG‑TGACCTTGCCAACAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGTTTTTGCCCAAACGGTTCGGGTGGTTGTCATAGCCGCAAGGCTAATAATTCTTg                                         <  1:548961/150‑1 (MQ=255)
                                                                                                            ccGACC‑GCCGG‑TGACCTTGCCAACAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGTTTTTGCCCAAACGGTTCGGGTGGTTGTCATAGCCGCAAGGCTAATAATTCTTg                                         <  2:1358503/150‑1 (MQ=255)
                                                                                                              gACC‑GCCGG‑TGACCTTGCCAACAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGTTTTTGcc                                                                                       >  1:1117123/1‑102 (MQ=255)
                                                                                                              gACC‑GCCGG‑TGACCTTGCCAACAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGTTTTTGcc                                                                                       <  2:1117123/102‑1 (MQ=255)
                                                                                                               aCC‑GCCGG‑TGACCTTGCCAACAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGTTTTTGCCCAAACGGTTCGGGTGGTTGTCATAGCCGCAAGGCTAATAATTCTTGTAt                                      >  2:1937341/1‑150 (MQ=255)
                                                                                                               aCC‑GCCGG‑TGACCTTGCCAACAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGTTTTTGCCCAAACGGTTCGGGTGGTTGTCATAGCCGCAAGGCTAATAATTCTTGTAt                                      >  2:1100486/1‑150 (MQ=255)
                                                                                                                   gccgG‑TGACCTTGCCAACAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGTTTTTGCCCAAACGGTTCGGGTGGTTGTCATAGCCGCAAGGCTAATAATTCTTGTATCAg                                   <  2:821475/150‑1 (MQ=255)
                                                                                                                      cgatctccTTGCCAACAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGTTTTTGCCCAAACGGTTCGGGTGGTTGTCATAGCCGCAAGGCTAATAATTCTTGTATCAGGa                                 <  1:743032/144‑1 (MQ=255)
                                                                                                                       g‑TGACCTTGCCAACAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTtgt                                                                                                                              <  2:476385/55‑1 (MQ=255)
                                                                                                                       g‑TGACCTTGCCAACAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTtgt                                                                                                                              >  1:476385/1‑55 (MQ=255)
                                                                                                                             cTTGCCAACAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGTTTTTGCTCAAACGGGCCGGGTGGTTGTCATAGCCGCAAGGCTAATAGTAGTTGTATgaggagggagcg                          >  2:743032/1‑144 (MQ=255)
                                                                                                                                  caacaaACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGTTTTTGCCCAAACGGTTCGggtggt                                                                      <  1:2326320/101‑1 (MQ=255)
                                                                                                                                  caacaaACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGTTTTTGCCCAAACGGTTCGggtggt                                                                      >  2:2326320/1‑101 (MQ=255)
                                                                                                                                     gaaacaaGCCCC‑ATATAGGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGTTTTTGCCCAAACGGTTCggg                                                                          <  1:838875/93‑1 (MQ=38)
                                                                                                                                     caaacaaGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGTTTTTGCCCAAACGGTTCGGGTGGTTGTCATAGCCGCAAGGCTAATAATTCTTGTATCAGGAGCATCTAGCCCATGa                  <  2:702011/150‑1 (MQ=255)
                                                                                                                                     caaacaaGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGAACGGCTCACCTGAGCCTGGGTTTTTGCCCAAACGGTTCGGGTGGTTGTCATAGCCGCAAGGCTAATAATTCTTGTATCAGGAGCATCTAGCCCATGa                  <  1:1556005/150‑1 (MQ=255)
                                                                                                                                      aaacaaGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGTTTTTGCCCAAACGGTTCGGGTGGtt                                                                     >  2:25570/1‑98 (MQ=255)
                                                                                                                                      aaacaaGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGTTTTTGCCCAAACGGTTCGGGTGGtt                                                                     <  1:25570/98‑1 (MQ=255)
                                                                                                                                      aaacaaGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGTTTTTGCCCAAACGGTTCGGGTGGTTGTCATAGCCGCAAGGCTAATAATTCTTGTATCAGGAGCATCTAGCCCATGAg                 >  2:1494659/1‑150 (MQ=255)
                                                                                                                                      aaacaaGCCCC‑ATATAGGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGTTTTTGCCCAAACGGTTCGGGTGGTTGTCATAGCCGCAAGGCTAATAATTCTTGTATCAGGAGCATCTAGCCCATGAg                 >  2:842113/1‑150 (MQ=255)
                                                                                                                                           cgCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAACGGTCGGCTCACCTGCGCCTGGGTTTTTGCCCAAACGGTTCGGGTGGTTGTCATAGCCGCAAGGCTAATACTTCTTGTATCAGGAGCATCTAGCCCATGAGTATGc            <  1:1478029/149‑1 (MQ=255)
                                                                                                                                           aGCACCTATAT‑GGTGCTTGCTTCGTTTCTGCCTTCTGTCTAGAATGCCCGGCTCACCTGAGCCTGGGTTTTTGCCCAAACGGTTCGGGTGGTTGTCATAGCCGCAAGGCTAAAAATTCTTGTATCAGGAGCATCTAGCCCATGAGTATGc            <  1:1517809/150‑1 (MQ=255)
                                                                                                                                            gCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGTTTTTGCCCAAACGGTTCGGGTGGTTGTCATAGCCGCAAGGCTAATAATTCTTGTATCAGGAGCATCTAGCCCATGAGTATGCa           <  1:2145389/150‑1 (MQ=255)
                                                                                                                                               ccTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGTTTTTGCCCAAACGGTTCGGGTGGTTGTCATa                                                               >  2:112668/1‑95 (MQ=255)
                                                                                                                                                cTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCCCCTGCGCCTGGGTTTTTGCCCAAACGGTTCGGGTGGTTGTCATAGCCGCAAGGCTAATAATTCTTGTATCAGGAGCATCTAGCCCATGAGTATGCAGGAc       >  2:1791155/1‑150 (MQ=255)
                                                                                                                                                cTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGTTTTTGCCCAAACGGTTCGGGTGGTTGTCATAGCCGCAAGGCTAATAATTCTTGTATCAGGAGCATCTAGCCCATGAGTATGCAGGAc       >  1:2193671/1‑150 (MQ=255)
                                                                                                                                                cTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGTTTATGCCCAAACGGTTCGGGTGGTTGTCATAGCCGCAAGGCTAATAATTCTTGTATCAGGAGCATCTAGCCCATGAGTATGCAGGAc       >  2:1736881/1‑150 (MQ=255)
                                                                                                                                                 tataT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGTTTTTGCCCAAACGGTTCGGGTGGTTGTCATAGCCGCAAGGCTAATAATTCTTGTATCAGGAGCATCTAGCCCATGAGTATGCAGGAcc      <  1:490625/150‑1 (MQ=255)
                                                                                                                                                   tat‑GGGGCTTGTTTCGTTTCTGCCTCGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGTTTTTGCCCAAACGGTTCgg                                                                           >  2:850844/1‑79 (MQ=255)
                                                                                                                                                   tat‑GAGGCTTGTTACGTTTCTGACATGTGTCTAGAATGACCGCTTCAACGAGGTCTGGGTTTTTGCCCAAACGGTTCGGGTGGTTGTCATAGCCGCAAGGCTCATAATTCGTGTATCAGGAGCATCTAGCCCATGAGTATGCAGGACCCg    >  2:340407/1‑150 (MQ=255)
                                                                                                                                                     t‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGTTTTTGCCCAAACGGTTCGGGTGGTTGTCATAGCCGCAAGGCTAATAATTCTTGTATCAGGAGCATCTAGCCCATGAGTATGCAGGACCCGtt  >  2:2182784/1‑150 (MQ=255)
                                                                                                                                                      |                                                                                                                                                     
GGCCGTAACATGCTGCGTCAAGCTGCAATGCGCGGTGACGTACCAGGTCTGGTCAAGGCCTCCTGGTAATCGCTGCAGGCAAGGCGCGGGTGGAAGGGGAGCAATCTTCCGACC‑GCCGG‑TGACCTTGCCAACAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGTTTTTGCCCAAACGGTTCGGGTGGTTGTCATAGCCGCAAGGCTAATAATTCTTGTATCAGGAGCATCTAGCCCATGAGTATGCAGGACCCGTT  >  NC_002947/557192‑557488

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑