| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,915,640:1 | +A | 8.2% | intergenic (+26/‑263) | fklB‑II → / → PP_1715 | FKBP‑type peptidyl‑prolyl cis‑trans isomerase/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,915,640 | 1 | . | A | 8.2% | 374.5 / 27.9 | 98 | intergenic (+26/‑263) | fklB‑II/PP_1715 | FKBP‑type peptidyl‑prolyl cis‑trans isomerase/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base . (44/46); new base A (6/2); total (50/48) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.69e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.78e-01 | |||||||||||
Only 100 of 111 total aligned reads displayed.
CCCGCTGATCCCGGCCAACTCGGTACTGGTGTTCGATCTGGAACTGATCGCCATCAAGGACCCGGCCCAGTTGCAAGGTGCCGAGCCGCAGGCCGAAGCCCCTGAAGAAGCACCTGCCAAGTAACATTGGCTGGTTGTCGGAAACGCCCC‑ACATTGTTGGGGCGTTTTCGTTTGTGCCGATTGGACGAACCTGCAACAGCTGATACTGT‑CCGAGGAAATGCAGCGTGAAGAAGTAGGATGTTTCTGACGCAAATCGTTTGCGCCGCAGGTAGTCATGGCGTGAAACGACTGTGTAAAAA > NC_002947/1915491‑1915789 | cccGCTGATCCCGGCCAACTCGGTACTGGTGTTCGATCTGGAACTGATCGCCATCAAGGACCCGGCCCAGTTGCAAGGTGCCGAGCCGCAGGCCGAAGCCCCTGAAGAAGCACCTGCCAAGTAACATTGGCTGGTTGTCGGAAACGcccc > 1:1056013/1‑150 (MQ=255) ccGCTGATCCCGGCCAACTCGGTACTGGTGTTCGATCTGGAACTGATCGCCATCAAGGACCCGGCCCAGTTGCAAGGTGCCGAGCCGCAGGCCGAAGCCCCTGAAGAAGCACCTGCCAAGTAACATTGGCTGGTTGTCGGAAACGCCCc‑a > 1:1019490/1‑150 (MQ=255) aTCCCGGCCAACTCGGTACTGGTGTTCGATCTGGAACTGATCGCCATCAAGGACCCGGCCCAGTTGCAAGGTGCCGAGCCGCAGGCCGAAGCCCCTGAAGAAGCACCTGCCAAGTAACATTGGCTGGTTGTCGGAAACGCCCC‑ACAttgt < 2:1713738/150‑1 (MQ=255) cTCGGTACTGGTGTTCGATCTGGAACTGATCGCCATCAAGGACCCGGCCCAGTTGCAAGGTGCCGAGCCGCAGGCCGAAGCCCCTGAAGAAGCACCTGCCAAGTAACATTGGCTGGTTGTCGGAAACGCCCC‑ACATTGTTGGGGCGtttt > 2:125424/1‑150 (MQ=255) tCGGTACTGGTGTTCGATCTGGAACTGATCGCCATCAAGGACCCGGCCCAGTTGCAAGGTGCCGAGCCGCAGGCCGAAGCCCCTGAAGAAGCACCTGCCAAGTAACATTGGCTGGTTGTCGGAAACGCCCC‑ACATTGTTGGGGCGTTTTc > 2:2339278/1‑150 (MQ=255) tCGGTACTGGTGTTCGATCTGGAACTGATCGCCATCAAGGACCCGGCCCAGTTGCAAGGTGCCGAGCCGCAGGCCGAAGCCCCTGAAGAAGCACCTGCCAAGTAACATTGGCTGGTTGTCGGAAACGCCCC‑ACATTGTTGGGGCGTTTTc > 1:1655246/1‑150 (MQ=255) gTACTGGTGTTCGATCTGGAACTGATCGCCATCAAGGACCCGGCCCAGTTGCAAGGTGCCGAGCCGCAGGCCGAAGCCCCTGAAGAAGCACCTGCCAAGTAACATTGGCTGGTTGTCGGAAACGCCCC‑ACATTGTTGGGGCGTTTTCGtt < 2:336972/150‑1 (MQ=255) cTGGTGTTCGATCTGGAACTGATCGCCATCAAGGACCCGGCCCAGTTGCAAGGTGCCGAGCCGCAGGCCGAAGCCCCTGAAGAAGCACCTGCCAAGTAACATTGGCTGGTTGTCGGAAACGCCCC‑ACATTGTTGGGGCGTTTTCGTTtgt < 2:2397919/150‑1 (MQ=255) cTGGTGTTCGATCTGGAACTGATCGCCATCAAGGACCCGGCCCAGTTGCAAGGTGCCGAGCCGCAGGCCGAAGCCCCTGAAGAAGCACCTGCCAAGTAACATTGGCTGGTTGTCGGAAACGCCCC‑ACATTGTTGGGGCGTTTTCGTTtgt < 1:954787/150‑1 (MQ=255) tGGTGTTCGATCTGGAACTGATCGCCATCAAGGACCCGGCCCAGTTGCAAGGTGCCGAGCCGCAGGCCGAAGCCCCTGAAGAAGCACCTGCCAAGTAACATTGGCTGGTTGTCGGAAACGCCCC‑ACATTGTTGGGGCGTTTTCGTTtgtg < 1:249562/150‑1 (MQ=255) gtgtTCGATCTGGAACTGATCGCCATCAAGGACCCGGCCCAGTTGCAAGGTGCCGAGCCGCAGGCCGAAGCCCCTGAAGAAGCACCTGCCAAGTAACATTGGCTGGTTGTCGGAAACGCCCC‑ACATTGTTGGGGCGTTTTc < 1:1508618/141‑1 (MQ=255) gtgtTCGATCTGGAACTGATCGCCATCAAGGACCCGGCCCAGTTGCAAGGTGCCGAGCCGCAGGCCGAAGCCCCTGAAGAAGCACCTGCCAAGTAACATTGGCTGGTTGTCGGAAACGCCCC‑ACATTGTTGGGGCGTTTTc > 2:1508618/1‑141 (MQ=255) tgtTCGATCTGGAACTGATCGCCATCAAGGACCCGGCCCAGTTGCAAGGTGCCGAGCCGCAGGCCGAAGCCCCTGAAGAAGCACCTGCCAAGTAACATTGGCTGGTTGTCGGAAACGCCCC‑ACATTGTTGGGGCGTTTTCGTTTGTGCCg > 2:2340799/1‑150 (MQ=255) tCGATCTGGAACTGATCGCCATCAAGGACCCGGCCCAGTTGCAAGGTGCCGAGCCGCAGGCCGAAGCCCCTGAAGAAGCACCTGCCAAGTAACATTGGCTGGTTGTCGGAAACGCCCC‑ACATTGTTGGGGCGTTTTCGTTTGTGCCGAtt < 2:771232/150‑1 (MQ=255) aTCTGGAACTGATCGCCATCAAGGACCCGGCCCAGTTGCAAGGTGCCGAGCCGCAGGCCGAAGCCCCTGAAGAAGCACCTGCCAAGTAACATTGGCTGGTTGTCGGAAACGCCCC‑ACATTGTTGGGGCGTTTTCGTTTGTGCCGATTGGa > 2:1927341/1‑150 (MQ=255) ggAACTGATCGCCATCAAGGACCCGGCCCAGTTGCAAGGTGCCGAGTCGAAGGCCGAAGCCCCTGAAGAAGCACCTGCCAAGTAACATTGGCTGGTTGTCGGAAACGCCCC‑ACAttgttg > 1:999215/1‑120 (MQ=255) tGATCGCCATCAAGGACCCGGCCCAGTTGCAAGGTGCCGAGCCGCAGGCCGAAGCCCCTGAAGAAGCACCTGCCAAGTAACATTGGCTGGTTGTCGGAAACGCCCC‑ACATTGTTGGGGCGTTTTCGTTTGTGCCGATTGGACGAACCt < 2:1986376/148‑1 (MQ=255) tGATCGCCATCAAGGACCCGGCCCAGTTGCAAGGTGCCGAGCCGCAGGCCGAAGCCCCTGAAGAAGCACCTGCCAAGTAACATTGGCTGGTTGTCGGAAACGCCCC‑ACATTGTTGGGGCGTTTTCGTTTGTGCCGATTGGACGAACCt > 1:1986376/1‑148 (MQ=255) tGATCGCCATCAAGGACCCGGCCCAGTTGCAAGGTGCCGAGCCGCAGGCCGAAGCCCCTGAAGAAGCACCTGCCAAGTAACATTGGCTGGTTGTCGGAAACGCCCC‑ACATTGTTGGGGCGTTTTCGTTTGTGCCGATTGGACGAACCTGc < 2:2034089/150‑1 (MQ=255) tGATCGCCATCAAGGACCCGGCCCAGTTGCAAGGTGCCGAGCCGCAGGCCGAAGCCCCTGAAGAAGCACCTGCCAAGTAACATTGGCTGGTTGTCGGAAACGCCCC‑ACATTGTTGGGGCGTTTTCGTTTGTGCCGATTGGACGAACCTGc > 2:1493955/1‑150 (MQ=255) tCGCCATCAAGGACCCGGCCCAGTTGCAAGGTGCCGAGCCGCAGGCCGAAGCCCCTGAAGAAGCACCTGCCAAGTAACATTGGCTGGTTGTCGAAAACGCCCCAACAATG‑TGGGGCGtttc > 1:688801/1‑120 (MQ=38) tCGCCATCAAGGACCCGGCCCAGTTGCAAGGTGCCGAGCCGCAGGCCGAAGCCCCTGAAGAAGCACCTGCCAAGTAACATTGGCTGGTTGTCGAAAACGCCCCAACAATG‑TGGGGCGtttc < 2:688801/121‑2 (MQ=38) gCCATCAAGGACCCGGCCCAGTTGCAAGGTGCCGAGCCGCAGGCCGAAGCCCCTGAAGAAGCACCTGCCAAGTAACATTGGCTGGTTGTCGGAAACGCCCC‑ACAtt > 2:314008/1‑106 (MQ=255) gCCATCAAGGACCCGGCCCAGTTGCAAGGTGCCGAGCCGCAGGCCGAAGCCCCTGAAGAAGCACCTGCCAAGTAACATTGGCTGGTTGTCGGAAACGCCCC‑ACAtt < 1:314008/106‑1 (MQ=255) ccATCAAGGACCCGGCCCAGTTGCAAGGTGCCGAGCCGCAGGCCGAAGCCCCTGAAGAAGCACCTGCCAAGTAACATTGGCTGGTTGTCGGAAACGCCCC‑ACATTGTTGGGGCGTTTTCGTTtg > 1:35526/1‑124 (MQ=255) ccATCAAGGACCCGGCCCAGTTGCAAGGTGCCGAGCCGCAGGCCGAAGCCCCTGAAGAAGCACCTGCCAAGTAACATTGGCTGGTTGTCGGAAACGCCCC‑ACATTGTTGGGGCGTTTTCGTTtg < 2:35526/124‑1 (MQ=255) ccATCAAGGACCCGGCCCAGTTGCAAGGTGCCGAGCCGCAGGCCGAAGCCCCTGAAGAAGCACCTGCCAAGTAACATTGGCTGGTTGTCGAAAACGCCCCAACAATG‑TGGGGCGtttc > 2:1095532/1‑117 (MQ=38) ccATCAAGGACCCGGCCCAGTTGCAAGGTGCCGAGCCGCAGGCCGAAGCCCCTGAAGAAGCACCTGCCAAGTAACATTGGCTGGTTGTCGAAAACGCCCCAACAATG‑TGGGGCGtttc < 1:1095532/118‑2 (MQ=38) aTCAAGGACCCGGCCCAGTTGCAAGGTGCCGAGCCGCAGGCCGAAGCCCCTGAAGAAGCACCTGCCAAGTAACATTGGCTGGTTGTCGGAAACGCCCC‑ACATTGTTGGGGCGTTTTCGTTTGTGCCGATTGGACGAACCTGCAACAGCTg > 2:2223443/1‑150 (MQ=255) tCAAGGACCCGGCCCAGTTGCAAGGTGCCGAGCCGCAGGCCGAAGCCCCTGAAGAAGCACCTGCCAAGTAACATTGGCTGGTTGTCGGAAACGCCCC‑ACATTGTTGGGGCGTTTTCGTTTGTGCCGATTGGACGAACCTGCAACAGCTGa < 1:1720862/150‑1 (MQ=255) aCCCGGCCCAGTTGCAAAGTGCCGAGCCGCAGGCCGAAGCCCCTGAAGAAGCACCTGCCAAGTAACATTGGCTGGTTGTCGGAAACGCCCC‑ACATTGTTGGGGCGTTTTCGTTTGTGCCGATTGGACGAACCTGCAACAGCTGATACTGt < 2:733981/150‑1 (MQ=255) cccGGCCCAGTTGCAAGGTGCCGAGCCGCAGGCCGAAGCCCCTGAAGAAGCACCTGCCAAGTAACATTGGCTGGTTGTCGGAAACGCCCC‑ACATTGTTGGGGCGTTTTCGTTTGTGCCGATTGGACGAACCTGCAACAGCTGATACTGT‑c > 2:1624904/1‑150 (MQ=255) ggCCCAGTTGCAAGGTGCCGAGCCGCAGGCCGAAGCCCCTGAAGAAGCACCTGCCAAGTAACATTGGCTGGTTGTCGGAAACGCCCC‑ACATTGTTGGGGCGTTTTCGTTTGTGCCGATTGGACGAACCTGCAACAGCTGATACTGT‑CCGa < 1:1557226/150‑1 (MQ=255) gCCCAGTTGCAAGGTGCCGAGCCGCAGGCCGAAGCCCCTGAAGAAGCACCTGCCAAGTAACATTGGCTGGTTGTCGGAAACGCCCC‑ACATTGTTGGGGCGTTTTCGTTTGTGCCGATTGGACGAACCTGCAACAGCTGATACTGT‑CCGAg < 2:363154/150‑1 (MQ=255) ccAGTTGCAAGGTGCCGAGCCGCAGGCCGAAGCCCCTGAAGAAGCACCTGCCAAGTAACATTGGCTGGTTGTCGGAAACGCCCC‑ACAttgtt > 1:2206267/1‑92 (MQ=255) ccAGTTGCAAGGTGCCGAGCCGCAGGCCGAAGCCCCTGAAGAAGCACCTGCCAAGTAACATTGGCTGGTTGTCGGAAACGCCCC‑ACATTGTTGGGGCGTTTTCGTTTGTGCCGATTGGACGAACCTGCAACAGCTGATACTGT‑cc < 2:1064556/145‑1 (MQ=255) ccAGTTGCAAGGTGCCGAGCCGCAGGCCGAAGCCCCTGAAGAAGCACCTGCCAAGTAACATTGGCTGGTTGTCGGAAACGCCCC‑ACATTGTTGGGGCGTTTTCGTTTGTGCCGATTGGACGAACCTGCAACAGCTGATACTGT‑cc > 1:1064556/1‑145 (MQ=255) aGTTGAAAGGTGACGAGCCGCAGGCCGAAGCCCCTGAAGAAGCACCTGCCAAGTAACATTGGCTGGTTGTCGGAAACGCCCC‑ACATTTTTGGGGCGTTTTCGTTTGTGCCGATTGGACGAACCTGCAACAGCTGATACTGT‑CCGAGGaaa < 2:2369441/150‑1 (MQ=255) gCAAGGTGCCGAGCCGCAGGCCGAAGCCCCTGAAGAAGCACCTGCCAAGTAACATTGGCTGGTTGTCGGAAACGCCCC‑ACATTGTTGGGGCGTTTTCGTTTGTGCCGATTGGa < 1:2113032/113‑1 (MQ=255) gCAAGGTGCCGAGCCGCAGGCCGAAGCCCCTGAAGAAGCACCTGCCAAGTAACATTGGCTGGTTGTCGGAAACGCCCC‑ACATTGTTGGGGCGTTTTCGTTTGTGCCGATTGGa > 2:2113032/1‑113 (MQ=255) gCAAGGTGCCGAGCCGCAGGCCGAAGCCCCTGAAGAAGCACCTGCCAAGTAACATTGGCTGGTTGTCGGAAACGCCCC‑ACATTGTTGGGGCGTTTTCGTTTGTGCCGATTGGACGAACCTGCAACAGCTGATACTGT‑CCGAGGAAATGCa < 1:1624904/150‑1 (MQ=255) cAAGGTGCCGAGCCGCAGGCCGAAGCCCCTGAAGAAGCACCTGCCAAGTAACATTGGCTGGTTGTCGGAAACGCCCC‑ACATTGTTGGGGCGTTTTCGTTTGTGCCGATTGGACGAACCTGCAACAGCTGATACTGT‑CCGAGGAAATGCAg < 2:1748130/150‑1 (MQ=255) aaGGTGCCGAGCCGCAGGCCGAAGCCCCTGAAGAAGCACCTGCCAAGTAACATTGGCTGGTTGTCGGAAACGCCCC‑ACATTGTTGGGGCGTTTTCGTTTGTGCCGATTGGACGAACCTGCAACAGCTGATACTGT‑CCGAGGAAATGCAGc > 2:87788/1‑150 (MQ=255) aaGGTGCCGAGCCGCAGGCCGAAGCCCCTGAAGAAGCACCTGCCAAGTAACATTGGCTGGTTGTCGGAAACGCCCC‑ACATTGTTGGGGCGTTTTCGTTTGTGCCGATTGGACGAACCTGCAACAGCTGATACTGT‑CCGAGGAAATGCAGc < 1:888109/150‑1 (MQ=255) aaGGTGCCGAGCCGCAGGCCGAAGCCCCTGAAGAAGCACCTGCCAAGTAACATTGGCTGGTTGTCGGAAACGCCCC‑ACATTGTTGGGGCGTTTTCGTTTGTGCCGATTGGACGAACCTGCAACAGCTGATACTGT‑CCGAGGAAATGCAGc > 2:492944/1‑150 (MQ=255) aGGTGCCGAGCTGCAGGCCGAAGCCCCCGAAGAAGCACCTGCCAAGTAACATTGGCTGGTTGTCGGAAACGCCCC‑ACATTGTTGGGGCGTTTTCGTTTGTGCCGATTg < 1:2301488/108‑1 (MQ=255) aGGTGCCGAGCCGCAGGCCGAAGCCCCTGAAGAAGCACCTGCCAAGTAACATTGGCTGGTTGTCGGAAACGCCCC‑ACATTGTTGGGGCGTTTTCGTTTGTGCCGATTGGACGAACCTGCAACAGCTGATACTGT‑CCGAGGAAATGCAGCg < 1:492944/150‑1 (MQ=255) aGGTGCCGAGCCGCAGGCCGAAGCCCCCGAAGAAGCACCTGCCAAGTAACATTGGCTGGTTGTCGGAAACGCCCC‑ACATTGTTGGGGCGTTTTCGTTTGTGCCGATTg > 2:2301488/1‑108 (MQ=255) ggTGCCGAGCCGCAGGCCGAAGCCCCTGAAGAAGCACCTGCCAAGTAACATTGGCTGGTTGTCGGAAACGCCCC‑ACATTGTTGGGGCGTTTTCGTTTGTGCCGATTGGACGAACCTGCAACAGCTGATACTGT‑CCGAGGAAATGCAGCGt < 1:125424/150‑1 (MQ=255) gCCGAGCCGCAGGCCGAAGCCCCTGAAGAAGCACCTGCCATCGAACATTGGCTGGTTGTCGGAAACGCCCC‑ACATTGTTGGGGCGTTTTCGTTTGTGCCGATTGGACGAACCTGCAACAGCTGATACTGT‑CCGAGGAAATGCAGCGTgaa < 1:1232399/150‑1 (MQ=255) gAGCCGCAGGCCGAAGCCCCTGAAGAAGCACCTGCCAAGTAACATTGGCTGGTTGTCGGAAACGCCCC‑ACATTGTTGGGGCGTTTTCGTTTGTGCCGATTGGACGAACCTGCAACAGCTGATACTGT‑CCGAGGAAATGCAGCGTgaagaa < 1:1493955/150‑1 (MQ=255) gCAGGCCGAAGCCCCTGAAGAAGCACCTGCCAAGTAACATTGGCTGGTTGTCGGAAACGCCCC‑ACATTGTTGGGGCGTTTTCGTTTGTGCCGATTGGACGAAACTGCAACAGCTGATACTGT‑CCGAGGAAATGCAGCGTGAAGACGTAgg > 1:567781/1‑150 (MQ=255) cAGGCCGAAGCCCCTGAAGAAGCACCTGCCAAGTAACATTGGCTGGTTGTCGGAAACGCCCC‑ACATTGTTGGGGCGTTTTCGTTTGTGCCGATTGGACGAACCTGCAACAGCTGATACTGT‑CCGAGGAAATGCAGCGTGAAGAAGTAGGa < 2:1019490/150‑1 (MQ=255) aGGCCGAAGCCCCTGAAGAAGCACCTGCCAAGTAACATTGGCTGGTTGTCGGAAACGCCCC‑ACATTGTTGGGGCGTTTTCGTTTGTGCCGATTGGACGAACCTGCAACAGCTGATACTGT‑CCGAGGAAATGCAGCGTGAAGAAGTAGGAt > 2:68723/1‑150 (MQ=255) gCCGAAGCCCCTGAAGAAGCACCTGCCAAGTAACATTGGCTGGTTGTCGGAAACGCCCC‑ACATTGTTGGGGCGTTTTCGTTTGTGCCGATTGGACGaa < 2:1208878/98‑1 (MQ=255) gCCGAAGCCCCTGAAGAAGCACCTGCCAAGTAACATTGGCTGGTTGTCGGAAACGCCCC‑ACATTGTTGGGGCGTTTTCGTTTGTGCCGATTGGACGaa > 1:1208878/1‑98 (MQ=255) gAAGCCCCTGAAGAAGCACCTGCCAAGTAACATTGGCTGGTTGTCGGAAACGCCCC‑ACATTGTTGGGGCGTTTTCGTTTGTGCCGATTGGACGAACCTGCAACAGCTGATACTGT‑CCGAGGAAATGCAGCGTGAAGAAGTAGGATGTTTc < 2:1655246/150‑1 (MQ=255) ccccTGAAGAAGCACCTGCCAAGTAACATTGGCTGGTTGTCGGAAACGCCCC‑ACATTGTTGGGGCGTTTTCGTTTGTGCCGATTGGACGAACCTGCAACAGCTGATACTGT‑CCGAGGAAATGCAGCATGAAGAAGTAGGATGTTTCTGAc < 2:771743/150‑1 (MQ=255) ccTGAAGAAGCACCTGCCAAGTAACATTGGCTGGTTGTCGGAAACGCCCC‑ACATTGTTGGGGCGttt > 1:859588/1‑67 (MQ=255) ccTGAAGAAGCACCTGCCAAGTAACATTGGCTGGTTGTCGGAAACGCCCC‑ACATTGTTGGGGCGttt < 2:859588/67‑1 (MQ=255) ccTGAAGAAGCACCTGCCAAGTAACATTGGCTGGTTGTCGGAAACGCCCC‑ACATTGTTGGGGCGTTTTCGt < 2:996084/71‑1 (MQ=255) gCACCTGCCAAGTAACATTGGCTGGTTGTCGGAAACGCCCC‑ACATTGTTGGGGCGTTTTCGTTTGTGCCGATTGGACGAACCTGCAACAg > 2:2333030/1‑90 (MQ=255) gCACCTGCCAAGTAACATTGGCTGGTTGTCGGAAACGCCCC‑ACATTGTTGGGGCGTTTTCGTTTGTGCCGATTGGACGAACCTGCAACAg < 1:2333030/90‑1 (MQ=255) ccccTGCCAAGTAACATTGTCTGGTTGTCGGAAATGACTC‑AGAGAGTTGGGTCGTTTTCGTTTGTGCCGATTAGACGAACCTGCAACAGCTGATACTGT‑CCGAGGAAATGCAGCGTGAAGAAGTAGGATGTTTCTGACGCAAATCGTTTg < 1:2340799/148‑1 (MQ=255) cTGCCAAGTAACATTGGCTGGTTGTCGGAAACGCCCC‑ACATTGTTGGGGCGTTTTCGTTTGTGCCGATTGGACGAACCTGCAACAGCTGATACTGT‑CCGAGGAAATGCAGCGTGAAGAAGTAGGATGTTTCTGACGCAAATCGTTTgcgc < 1:68723/150‑1 (MQ=255) tGCCAAGTAACATTGGCTGGTTGTCGGAAACGCCCC‑ACATTGTTGGGGCGTTTTCGTTTGTGCCGATTGGACGAACCTGCAACAGCTGATACTGT‑CCGAGGAAATGCAGCGTGAAGAAGTAGGAt > 2:1740800/1‑125 (MQ=255) tGCCAAGTAACATTGGCTGGTTGTCGGAAACGCCCC‑ACATTGTTGGGGCGTTTGCGTTTGTGCCGATTGGACGAACCTGCAACAGCTGATACTGT‑CCGAGGAAATGCAGCGTGAAGAAGTAGGAt < 1:1740800/125‑1 (MQ=255) gCCAAGTAACATTGGCTGGTTGTCGGAAACGCCCC‑ACATTGTTGGGGCGTTTTCGTTTGTGCCGATTGGACGAACCTGCAACAGCTGATACTGT‑CCGAGGAAATGCAGCGTGAAGAAGTAGGATGTTTCTGACGCAAATCGTTTGcgccg > 1:1391058/1‑150 (MQ=255) gTAACATTGGCTGGTTGTCGGAAACGCCCC‑ACATTGTTGGGGCGTTTTCGTTTGTGCCGATTGGACGAACCTGCAACAg < 1:358401/79‑1 (MQ=255) gTAACATTGGCTGGTTGTCGGAAACGCCCC‑ACATTGTTGGGGCGTTTTCGTTTGTGCCGATTGGACGAACCTGCAACAg > 2:358401/1‑79 (MQ=255) tAACATTGGCTGGTTGTCGGAAACGCCCC‑ACATTGTTGGGGCGTTTTCGTTTGTGCCGATTGGACGAACCTGCAACAGCTGATACTGT‑CCGAGGAAATGCAGCGTGaagaag > 1:2195163/1‑112 (MQ=255) tAACATTGGCTGGTTGTCGGAAACGCCCC‑ACATTGTTGGGGCGTTTTCGTTTGTGCCGATTGGACGAACCTGCAACAGCTGATACTGT‑CCGAGGAAATGCAGCGTGaagaag < 2:2195163/112‑1 (MQ=255) tAACATTGGCTGGTTGTCGGAAACGCCCC‑ACATTGTTGGGGCGTTTTCGTTTGTGCCGATTGGACGAACCTGCAACAGCTGATACTGT‑CCGAGGAAATGCAGCGTGAAGAAGTAGGATGTTTCTGACGCAAATCGTTTGCGCCGCAGGTa > 1:118104/1‑150 (MQ=255) tAACATTGGCTGGTTGTCGGAAACGCCCC‑ACATTGTTGGGGCGTTTTCGTTTGTGCCGATTGGACGAACCTGCAACAGCTGATACTGT‑CCGAGGAAATGCAGCGTGAAGAAGTAGGATGTTTCTGACGCAAATCGTTTGCGCCGCAGGTa > 1:2313967/1‑150 (MQ=255) aCATTGGCTGGTTGTCGGAAACGCCCC‑ACATTGTTGGGGCGTTTTCGTTTGTGCCGATTGGACGAACCTGCAACAGCTGATACTGT‑CCGAGGAAATGCAGCGTGAAGAAGTAGGATGTTTc > 2:842317/1‑121 (MQ=255) aCATTGGCTGGTTGTCGGAAACGCCCC‑ACATTGTTGGGGCGTTTTCGTTTGTGCCGATTGGACGAACCTGCAACAGCTGATACTGT‑CCGAGGAAATGCAGCGTGAAGAAGTAGGATGTTTc < 1:842317/121‑1 (MQ=255) ttGGCTGGTTGTCGGAAACGCCCC‑ACATTGTTGGGGCGTTTTCGTTTGTGACGATTGGACGAACCTGAAACAGCTGATAATGT‑CCGAGGAAATGAAGTGTGAAGAAGTATGAAGTTTATGAGGTAAATTGCTTGCACCTCAGGTAGTCAt > 2:758630/1‑150 (MQ=255) gCTGGTTGTCGGAAACGCCCC‑ACATTGTTGGGGCGTTTTCGTTTGTGCCGATTGGACGAACCTGCAACAGCTGATACTGT‑CCGAGGAAATGCAGCGTGAAGAAGTAGGATGTTTCTGACGCAAATc < 2:2010102/126‑1 (MQ=255) gCTGGTTGTCGGAAACGCCCC‑ACATTGTTGGGGCGTTTTCGTTTGTGCCGATTGGACGAACCTGCAACAGCTGATACTGT‑CCGAGGAAATGCAGCGTGAAGAAGTAGGATGTTTCTGACGCAAATc > 1:2010102/1‑126 (MQ=255) tGGTTGTCGGAAACGCCCC‑ACATTGTTGGGGCGTTTTCGTTTGTGCCGATTGGACGAACCTGCAACAGCTGATACTGT‑CCGAGGAAATGCAGCGTGAAGAAGTAGGATGTTTCTGACGCAAATCGTTTGCGCCGCAGGTAGTCATGGCGt > 2:1976727/1‑150 (MQ=255) tGGTTGTCGGAAACGCCCC‑ACATTGTTGGGACGGTTTCGTTTTTGCCGATTGGACGAACCTGCTAATCGTGAT‑CGGTGCCGAGGAAATGCAGCGTGAAGAAGTAGGATGTTTCTGACGCAAATCGTTTGCGCCGCAGGTAGTCATGGCGt < 1:2223443/150‑1 (MQ=255) gTTGTCGGAAACGCCCC‑ACATTGTTGGGGCGTTTTCGTTTGTGCCGATTGGACGAACCTGCAACa > 1:1846066/1‑65 (MQ=255) gTTGTCGGAAACGCCCC‑ACATTGTTGGGGCGTTTTCGTTTGTGCCGATTGGACGAACCTGCAACa < 2:1846066/65‑1 (MQ=255) aaacgaaaaCGCCCCAACAATG‑TGGGGCGTTTTCGTTTGTGCCGATTGGACGAACCTGCAACAGCTGATACTGT‑CCGAGGAAATGCAGCGTGAAGAAGTAGGATGTTTCTGACGCAAATCGTTTGCGCCGCAGGTAGTCATGGCGTGaaa > 2:1934603/7‑150 (MQ=255) gAAACGCCCC‑ACATTGTTGGGGCGTTTTCGTTTGTGCCGATTGGACGAACCTGCAACAGCTGATACTGT‑CCGAGGAAATGCAGCGTGAAGAAGTAGGATGTTTCTGACGCAAATCGTTTGCGCCGCAGGTAGTCATGGCGTGAAACGACt > 1:2050934/1‑150 (MQ=255) aaaCGCCCCAACAATG‑TGGGGCGTTTTCGTTTGTGCCGATTGGACGAACCTGGAACAGCTGATACTGT‑CCGAGGAAATGCAGCGTGAAGAAGTAGGATGTTTCTGACGCAAATCGTTTGCGCCGCAGGTAGTCATGGCGTGAAACGACtg > 2:822676/1‑150 (MQ=255) aaCGCCCCAACAATG‑TGGGGCGTTTTCGTTTGTGCCGATTGGACGAACCTGCAACAGCTGATACTGT‑CCGAGGAAATGCAGCGTGAAGAAGTAGGATGTTTCTGACGCAAATCGTTTGCGCCGCAGGTAGTCATGGCGTGAAACGACtgt > 2:1031646/1‑150 (MQ=255) aaCGCCCC‑ACATTGTTGGGGCGTTTTCGTTTGTGCCGATTGGACGAACCTGCAACAGCTGATACTGT‑CCGAGGAAATGCAGCGt < 1:2232137/84‑1 (MQ=255) aaCGCCCC‑ACATTGTTGGGGCGTTTTCGTTTGTGCCGATTGGACGAACCTGCAACAGCTGATACTGT‑CCGAGGAAATGCAGCGt > 2:2232137/1‑84 (MQ=255) aaCGCCCC‑ACATTGTTGGGGCGTTTTCGTTTGTGCCAATTGGACGAACCTGCAACAGCTGATACTGT‑CCGAGGAAATGCAGCGTGAAGAAGTAGGATGTTTCTGACGCAAATCGTTTGCGCCGCAGGTAGTCATGGCGTGAAACGACtgt < 2:1056013/150‑1 (MQ=255) aCGCCCCAACAATG‑TGGGGCGTTTCCGTTTGTGCCGATTGGACGAACCTGCAACAGCTGATACTGT‑CCGAGGAAATGCAGCGTGAAGAAGTAGGATGTTTCTGACGCAAATCGTTTGCGCCGCAGGTAGTCATGGCGTGAAACGACtgtg > 1:1108496/1‑150 (MQ=255) ccc‑ACATTGTTGGGGCGTTTTCGTTTGTGCCGATTGGACGAACCTGCAACAGCTGATACTGT‑CCGAGGAAATGCAGCGTGAAGAAGTAGGATGTTTCTGACGCAAATCGTTTGCGCCGCAGGTAGTCATGGCGTGAAACGACTGTGTaaa > 2:1957908/1‑150 (MQ=255) cc‑ACATTGTTGGGGCGTTTTCGTTTGTGCCGATTGGACGAACCTGCAACAGCTGATACTGT‑CCGa < 2:2287757/65‑1 (MQ=255) cc‑ACATTGTTGGGGCGTTTTCGTTTGTGCCGATTGGACGAACCTGCAACAGCTGATACTGT‑CCGa > 1:2287757/1‑65 (MQ=255) cc‑ACATTGTTGGGGCGTTTTCGTTTGTGCCGATTGGACGAACCTGCAACAGCTGATACTGT‑CCGAGGAAATGCAGCGTGAAGAAGTAGGATGTTTCTGACGCAAATCGTTTGCGCCGCAGGTAGTCATGGCGt > 2:1045845/1‑133 (MQ=255) cc‑ACATTGTTGGGGCGTTTTCGTTTGTGCCGATTGGACGAACCTGCAACAGCTGATACTGT‑CCGAGGAAATGCAGCGTGAAGAAGTAGGATGTTTCTGACGCAAATCGTTTGCGCCGCAGGTAGTCATGGCGt < 1:1045845/133‑1 (MQ=255) cc‑ACATTGTTGGGGCGTTTTCGTCTGTGTACATCGGACTGACTGGCAACAGCTGATACTGT‑CCGAGGAAATGCAGCGTGAAGAAGTAGGATGTTTCTGACGCAAATCGTTTGCGCCGCAGGTAGTCATGGCGTGAAACGACTGTGTaaaa < 1:2339278/150‑1 (MQ=255) c‑acaTTGTTGGGGCGTTTTCGTTTGTGCCGATTGGACGAAc > 2:1555670/1‑41 (MQ=255) c‑acaTTGTTGGGGCGTTTTCGTTTGTGCCGATTGGACGAAc < 1:1555670/41‑1 (MQ=255) c‑acaTTGTTGGGGCGTTTTCGTTTGTGCCGATTGGACGAACCTGCAACAGCTGATACTGT‑CCGAGGAAATGCAGCGTGAAGAAGTAGGATGTTTCTGACGCAAATCGTTTGCGCCGCAGATACTAGTGTCGTGAAACGACTGTGTaaaaa > 2:561657/1‑150 (MQ=255) | CCCGCTGATCCCGGCCAACTCGGTACTGGTGTTCGATCTGGAACTGATCGCCATCAAGGACCCGGCCCAGTTGCAAGGTGCCGAGCCGCAGGCCGAAGCCCCTGAAGAAGCACCTGCCAAGTAACATTGGCTGGTTGTCGGAAACGCCCC‑ACATTGTTGGGGCGTTTTCGTTTGTGCCGATTGGACGAACCTGCAACAGCTGATACTGT‑CCGAGGAAATGCAGCGTGAAGAAGTAGGATGTTTCTGACGCAAATCGTTTGCGCCGCAGGTAGTCATGGCGTGAAACGACTGTGTAAAAA > NC_002947/1915491‑1915789 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |