| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 2,237,723:1 | +G | 5.1% | coding (904/1551 nt) | PP_1975 ← | EmrB/QacA family drug resistance transporter |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 2,237,723 | 1 | . | G | 5.1% | 564.1 / 22.3 | 136 | coding (904/1551 nt) | PP_1975 | EmrB/QacA family drug resistance transporter |
| Reads supporting (aligned to +/- strand): ref base . (62/67); new base G (5/2); total (67/69) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.71e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.29e-01 | |||||||||||
Only 100 of 138 total aligned reads displayed.
AACAGGCAAAACCCCAGCGCGCATAGTACCTTGGGCGATATCACCTTCATCAGTTGCGGCACCAGCGGGATCAGGAACAGCTGCGGAATACCCATCCACATGATCACCTCGCCAATCTGCAAGGCGTTGTAACCCTGTACCT‑GCGC‑CAGGTACAGCGGTAGCAGATAGATCGAGCCGTACAGGCCCACACCCATGCCCAGGCTGGCGATGCTCGACAGGCCAAAGTTGCGGTTGCCGAGGATACGCAGGTTGATCAGCGGGTGAGGCTTGGAAAACTGCAGGATGACGAAG > NC_002947/2237578‑2237868 | aaCAGGCAAAACCCCAGCGCGCATAGTACCTTGGGCGATATCACCTTCATCAGTTGCGGCACCAGCGGGATCAGGAACAGCTGCGGAATACCCATCCACATGATCACCTCGCCAATCTGCAAGGCGTTGTAACCCTGTACCT‑GCGC‑CAgg < 2:610769/150‑1 (MQ=255) aGGCAAAACCCCAGCGCGCATAGTACCTTGGGCGATATCCCCTTCATCAGTTGCGGCACCAGCGGGAGCAGGAACAGCTGCGGAATACCCATCCACATGATCACCTCGCCAATCTGCAAGGCGTCGTAACCCTGTACCT‑GCGC‑CAGGTAc > 1:750430/1‑150 (MQ=255) gCAAAACCCCAGCGCGCATAGTACCTTGGGCGATATCACCTTCATCAGTTGCGGCACCAGCGGGATCAGGAACAGCTGCGGAATACCCATCCACATGATCACCTCGCCAATCTGCAAGGCGTTGTAACCCTGTACCT‑GCGC‑CAGGTACAg > 2:851350/1‑150 (MQ=255) cAAAACCCCAGCGCGCATAGTAACTTGGGCGATATCACCTTCATCAGTTGCGGCACCAGCGGGATCAGGAACAGCTGCGGAATACCCATCCACATGATCACCTCGCCAATCTGCAAGGCGTTGTAACCCTGTACCT‑GCGC‑CAGGTACAGc < 2:1934301/150‑1 (MQ=255) aaaaCCCCAGCGCGCATAGTACCTTGGGCGATATCACCTTCATCAGTTGCGGCACCAGCGGGATCAGGAACAGCTGCGGAATACCCATCCACATGATCACCTCGCCAATCTGCAAGGCGTTGTAACCCTGTACCT‑GGCG‑CAGGTACAg < 1:1282367/148‑1 (MQ=255) aaaaCCCCAGCGCGCATAGTACCTTGGGCGATATCACCTTCATCAGTTGCGGCACCAGCGGGATCAGGAACAGCTGCGGAATACCCATCCACATGATCACCTCGCCAATCTGCAAGGCGTTGTAACCCTGTACCT‑G‑GCGCAGGTACAg > 2:1282367/1‑148 (MQ=255) aaCCCCAGCGCGCATAGTACCTTGGGCGATATCACCTTCATCAGTTGCGGCACCAGCGGGATCAGGAACAGCTGCGGAATACCCATCCACATGATCACCTCGCCAATCTGCAAGGCGTTGTAACCCTGTACCT‑GCGC‑CAGGTACAGCGGt < 2:2186859/150‑1 (MQ=255) aCCCCAGCGCGCATAGTACCTTGGGCGATATCACCTTCATCAGTTGCGGCACCAGCGGGATCAGGAACAGCTGCGGAATACCCATCCACATGATCACCTCGCCAATCTGCAAGGCGTTGTAACCCTGTACCT‑GCGC‑CAg > 2:1806267/1‑139 (MQ=255) aCCCCAGCGCGCATAGTACCTTGGGCGATATCACCTTCATCAGTTGCGGCACCAGCGGGATCAGGAACAGCTGCGGAATACCCATCCACATGATCACCTCGCCAATCTGCAAGGCGTTGTAACCCTGTACCT‑GCGC‑CAg < 1:1806267/139‑1 (MQ=255) ccccAGCGCGCATAGTACCTTGGGCGATATCACCTTCATCAGTTGCGGCACCAGCGGGATCAGGAACAGCTGCGGAATACCCATCCACATGATCACCTAGCCAATCTGCAAGGCGTTGTAACCCTGTACCT‑GCGC‑CAGGTACAGCGGTAg > 2:620746/1‑150 (MQ=255) ccAGCGCGCATAGTACCTTGGGCGATATCACCTTCATCAGTTGCGGCACCAGCGGGATCAGGAACAGCTGCGGAATACCCATCCACATGATCACCTCGCCAATCTGCAAGGCGTTGTAACCCTGTACCT‑GCGC‑CAGGTACAGCGGTAGCa < 1:1120350/150‑1 (MQ=255) gcgcATAGTACCTTGGGCGATATCACCTTCATCAGTTGCGGCACCAGCGGGATCAGGAACAGCTGCGGAATACCCATCCACATGATCACCTCGCCAATCTGCAAGGCGTTGTAACCCTGTACCT‑GCGC‑CAGGTACAGc > 1:1394539/1‑138 (MQ=255) gcATAGTACCTTGGGCGATATCACCTTCATCAGTTGCGGCACCAGCGGGATCAGGAACAGCTGCGGAATACCCATCCACATGATCACCTCGCCAATCTGCAAGGCGTTGTAACCCTGTACCT‑GCGC‑CAGGTACAGCGGTAGCagatagat < 1:317510/150‑1 (MQ=255) tAGTACCTTGGGCGATATCACCTTCATCAGTTGCGGCACCAGCGGGATCAGGAACAGCTGCGGAATACCCATCCACATGATCACCTCGCCAATCTGCAAGGCGTTGTAACCCTGTACCT‑GCGC‑CAGGTACAGCGGTAGCAGATAGATCGa > 1:1131025/1‑150 (MQ=255) aGTACCTTGGGCGATATCACCTTCATCAGTTGCGGCACCAGCGGGATCAGGAACAGCTGCGGAATACCCATCCACATGATCACCTCGCCAATCTGCAAGGCGTTGTAACCCTGTACCT‑GCGC‑CAGGTACAGCGGTAGCAGATAGATCGAg < 2:2233773/150‑1 (MQ=255) tACCTTGGGCGATATCACCTTCATCAGTTGCGGCACCAGCGGGATCAGGAACAGCTGCGGAATACCCATCCACATGATCACCTCGCCAATCTGCAAGGCGTTGTAACCCTGTACCT‑GCGC‑CAGGTACAGCGGTAGCAGATAGATCGAGcc < 1:2188169/150‑1 (MQ=255) tACCTTGGGCGATATCACCTTCATCAGTTGCGGCACCAGCGGGATCAGGAACAGCTGCGGAATACCCATCCACATGATCACCTCGCCAATCTGCAAGGCGTTGTAACCCTGTACCT‑GCGC‑CAGGTACAGCGGTAGCAGATAGATCGAGcc > 2:1526143/1‑150 (MQ=255) gATATCACCTTCATCAGTTGCGGCACCAGCGGGATCAGGAACAGCTGCGGAATACCCATCCACATGATCACCTCGCCAATCTGCAAGGCGTTGTAACCCTGTACCT‑GCGC‑CAGGTACAGCGGTAGCAGATAGATCGAGCCGTACAGGccc < 1:493801/150‑1 (MQ=255) ttCATCAGTTGCGGCACCAGCGGGATCAGGAACAGCTGCGGAATACCCATCCACATGATCACCTCGCCAATCTGCAAGGCGTTGTAACCCTGTACCT‑GCGC‑CAGGTACAGCGGTAGCAGATAGATCGAGCCGTACAGGCCCACACCCATg > 2:2408371/1‑150 (MQ=255) tcaGTTGCGGCACCAGCGGGATCAGAAACCGATGCGGAATACCCATCCACATGATCACCTCGCCAATCTGCAAGGCGTTGTCACCCTGTACCT‑GAGC‑CAGGTACAGCGGTAGCAGATAGCTCGAGCCGTCCAGGCCAACACCCATGCCCa > 2:1101637/1‑150 (MQ=255) tcACCAGCGGGATCAGGAACAGCTGCGGAATACCCATCCACATGATCACCTCGCCAATCTGCAAGGCGTTGTAACCCTGTACCT‑GCGC‑CAGGTACAGCGGTAGCAGATAGATCGAGCCGTACAGGCCCACACCCATGCCCAGGCTGGCGa < 1:1101637/149‑1 (MQ=255) gCACCAGCGGGATCAGGAACAGCTGCGGAATACCCATCCACATGATCACCTCGCCAATCTGCAAGGCGTTGTAACCCTGTACCT‑gcgc < 2:399877/88‑1 (MQ=255) gCACCAGCGGGATCAGGAACAGCTGCGGAATACCCATCCACATGATCACCTCGCCAATCTGCAAGGCGTTGTAACCCTGTACCT‑gcgc > 1:399877/1‑88 (MQ=255) gCACCAGCGGGATCAGGAACAGCTGCGGAATACCCATCCACATGATCACCTCGCCAATCTGCAAGGCGTTGTAACCCTGTACCT‑GCGC‑CAGGTACAGCGGTAGCAGATAGATCGAGCCGTACAGGCCCACACCCATGCCCAGGCTGGCGa < 2:1405357/150‑1 (MQ=255) cACCAGCGGGATCAGGAACAGCTGCGGAATACCCATCCACATGATCACCTCGCCAATCTGCAAGGCGTTGTAACCCTGTACCT‑GCGC‑CAGGTACAGCGGTAGCAGATAGATCGAGc < 2:2099278/116‑1 (MQ=255) cACCAGCGGGATCAGGAACAGCTGCGGAATACCCATCCACATGATCACCTCGCCAATCTGCAAGGCGTTGTAAATCTGTACCT‑GCGC‑CAGGTACAGCGGTAGCAGATAGATCGAGc > 1:2099278/1‑116 (MQ=255) ccAGCGGGATCAGGAACAGCTGCGGAATACCCATCCACATGATCACCTCGCCAATCTGCAAGGCGTTGTAACCCTGTACCT‑GCGC‑CAGGTACAGCGGTAGCagataga < 2:1357143/108‑1 (MQ=255) gCGGGATCAGGAACAGCTGCGGAATACCCATCCACATGATCACCTCGCCAATCTGCAAGGCGTTGTAACCCTGTACCT‑GCGC‑CAGGTACAGCGGTAGCAGATAGATCGAGCCGTACAGGCCCACACCCATGCCCAg < 2:1248384/136‑1 (MQ=255) gggATCAGGAACAGCTGCGGAATACCCATCCACATGATCACCTCGCCAATCTGCAAGGCGTTGTAACCCTGTACCT‑GCGC‑CAGGTACAGCGGTAGCAGATAGATCGAGCCGTACAGGCCCACACCCATGCCCAGGCTGGCGATGCTCTAc < 1:2408371/150‑1 (MQ=255) gggATCAGGAACAGCTGCGGAATACCCATCCACATGATCACCTCGCCAATCTGCAAGGCGTTGTAACCCTGTACCT‑GCGC‑CAGGTACAGCGGTAGCAGATAGATCGAGCCGTACAGGCCCACACCCATGCCCAGGCTGGCGATGCTCGAc < 1:1526143/150‑1 (MQ=255) gATCAGGAACAGCTGCGGAATACCCATCCACATGATCACCTCGCCAATCTGCAAGGCGTTGTAACCCTGTACCT‑GCGC‑CAGGTACAGCGGTAGCAGATAGATCGAGCCGTACAGGCCCACACCCATGCCCAGGCTGGCGATGCTCGACAg > 1:1308809/1‑150 (MQ=255) tCAGGAACAGCTGCGGAATACCCATCCACATGATCACCTCGCCAATCTGCAAGGCGTTGTAACCCTGTACCT‑GCGC‑CAGGTACAGCGGTAGCAGATAGATCGAGCCGTACAGGCCCACACCCATGCCCAGGCTGGCGATGCt < 2:1519522/142‑1 (MQ=255) tCAGGAACAGCTGCGGAATACCCATCCACATGATCACCTCGCCAATCTGCAAGGCGTTGTAACCCTGTACCT‑GCGC‑CAGGTACAGCGGTAGCAGATAGATCGAGCCGTACAGGCCCACACCCATGCCCAGGCTGGCGATGCTTGACAGGc > 2:957574/1‑150 (MQ=255) tCAGGAACAGCTGCGGAATACCCATCCACATGATCACCTCGCCAATCTGCAAGGCGTTGTAACCCTGTACCT‑GCGC‑CAGGTACAGCGGTAGCAGATAGATCGAGCCGTACAGGCCCACACCCATGCCCAGGCTGGCGATGCTCGACAGGc < 1:851350/150‑1 (MQ=255) tCAGGAACAGCTGCGGAATACCCATCCACATGATCACCTCGCCAATCTGCAAGGCGTTGTAACCCTGTACCT‑GCGC‑CAGGTACAGCAGTAGCagatagat < 2:258309/100‑1 (MQ=255) tCAGGAACAGCTGCGGAATACCCATCCACATGATCACCTCGCCAATCTGCAAGGCGTTGTAACCCTGTACCT‑GCGC‑CAGGTACAGCAGTAGCagatagat > 1:258309/1‑100 (MQ=255) gAACAGCTGCGGAATACCCATCCACATGATCACCTCGCCAATCTGCAAGGCGTTGTAACCCTGTACCT‑GCGC‑TCCTTACAGCGGTAGCAGATAGATCGAGCCGTACAGGCGCACACCCATGCCCAGGCTGGCGATGCTCGACAGGCCaaa > 1:542480/1‑150 (MQ=255) aGCTGCGGAATACCCATCCACATGATCACCTCGCCAATCTGCAAGGCGTTGTAACCCTGTACCT‑GCGC‑CAGGTACAGCGGTAGCAGATAGATCGAGCCGTACAGGCCCACACCCATGCCCAGGCTGGCGATGCTCGACAGGCCAAAGTTg > 1:1867982/1‑150 (MQ=255) cTGCGGAATACCCATCCACATGATCACCTCGCCAATCTGCAAGGCGTTGTAACCCTGTACCT‑GCGC‑CAGGTACAGCGGTAGCAGATAGATCGAGCCGTACAGGCCCACACCCATGCCCAGGCTGGCGATGCTCGACAGGCCAAAGTTGCg < 2:526216/150‑1 (MQ=255) cTGCGGAATACCCATCCACATGATCACCTCGCCAATCTGCAAGGCGTTGTAACCCTGTACCT‑GCGC‑CAGGTACAGCGGTAGCAGATAGATCGAGCCGTACAGGCCCACACCCATGCCCAGGCTGGCGATGCTCGACAGGCCAAAGTTGCg < 2:1308809/150‑1 (MQ=255) cTGCGGAATACCCATCCACATGATCACCTCGCCAATCTGCAAGGCGTTGTAACCCTGTACCT‑GCGC‑CAGGTACAGCGGTAGCAGATAGATCGAGCCGTACAGGCCCACACCCATGCCCAGGCTGGCGATGCTCGACAGGCCAAAGTTGCg < 1:490236/150‑1 (MQ=255) tACCCATCCACATGATCACCTCGCCAATCTGCAAGGCGTTGTAACCCTGTACCT‑GCGC‑CAGGTACAGCGGTAGCAGATAGATCGAGCCGTACAGGCCCACACCCATGCCCAGGCTGGCGATGCTCGACAGGCCAAAGTTGCGGTTGCCGa < 1:1525795/150‑1 (MQ=255) ctcccATCCACATGATCACCTCGCCAATCTGCAAGGCGTTGTAACCCTGTACCT‑GCGC‑CAGGTACAGCGGTAGCAGATAGATCGAGCCGTACAGGCCCACACCCATGCCCAGGCTGGCGATGCTCGACAGGCCAAAGTTGCGGTTGCCGa < 1:305212/148‑1 (MQ=255) aCCCATCCACATCATCACCTCGCCAAGCTGCAAGGCGTTGTAACCCTGTACCT‑GCGC‑CAGGTACAGCGGTAGCAGATAGCTCGAGCCGTACAGGCCCACACCCATGCCCAGGCTGGCGATGCTCGACAGGCCAAAGTTGCGGTTGCCGAg < 2:960952/150‑1 (MQ=255) cccATCCACATGATCACCTCGCCAATCTGCAAGGCGTTGTAACCCTGTACCT‑GCGC‑CAGGTACAGCGGTAGCagata < 1:860653/77‑1 (MQ=255) cccATCCACATGATCACCTCGCCAATCTGCAAGGCGTTGTAACCCTGTACCT‑GCGC‑CAGGTACAGCGGTAGCagata > 2:860653/1‑77 (MQ=255) ccATCCACATGATTACCTCGCCAATCTGCAAGGCGTTGTAACCCTGTACCT‑GCGC‑CAGGTACAGCGGTAGCAGATAGATCGAGCCGTACAGGCCCACACCCATGCCCAGGCTGGCGATGCTCGACAGGCCAAAGTTGCGGTTGCCGAGGa > 1:981526/1‑150 (MQ=255) ccATCCACATGATCACCTCGCCAATCTGCAAGGCGTTGTAACCCTGTACCT‑GCGC‑CAGGTACAGCGGTAGCAGATAGATCGAGc < 2:2062648/84‑1 (MQ=255) ccATCCACATGATCACCTCGCCAATCTGCAAGGCGTTGTAACCCTGTACCT‑GCGC‑CAGGTACAGCGGTAGCAGATAGATCGAGc > 1:2062648/1‑84 (MQ=255) ccATCCACATGATCACCTCGCCAATCTGCAAGGCGTTGTAACCCTGTACCT‑GCGC‑CAGGTACAGCGGTAGCAGATAGATCGAGCCGTACAGGCCCACACCCATGCCCAGGCTGGCGATGCTc > 1:242826/1‑122 (MQ=255) ccATCCACATGATCACCTCGCCAATCTGCAAGGCGTTGTAACCCTGTACCT‑GCGC‑CAGGTACAGCGGTAGCAGATAGATCGAGCCGTACAGGCCCACACCCATGCCCAGGCTGGCGATGCTc < 2:242826/122‑1 (MQ=255) ccATCCACATGATCACCTCGCCAATCTGCAAGGCGTTGTAACCCTGTACCT‑GCGC‑CAGGTACAGCGGTAGCAGATAGATCGAGCCGTACAGGCCCACACCCATGCCCAGGCTGGCGATGCTCGACAGGCCAAAGTTGCGGTTGCCGAGGa > 1:1239673/1‑150 (MQ=255) ccATCCACATGATCACCTCGCCAATCTGCAAGGCGTTGTAACCCTGTACCT‑GCGC‑CAGGTACAGCGGTAGCAGATAGATCGAGCCGCACAGGCCCACACCCATGCCCAGGCTGGCGATGCTCGACAGGCCAAAGTTGCGGTTGCCGAGGa > 2:144708/1‑150 (MQ=255) cATCCACATGATCACCTCGCCAATCTGCAAGGCGTTGTAACCCTGTACCT‑GCGC‑CAGGTACAGCGGTAGCAGATAGATCGAGCCGTACAGGCCCACACCCATGCCCAGGCTGGCGATGCTCGACAGGCCAAAGTTGCg < 1:1241767/138‑1 (MQ=255) cATCCACATGATCACCTCGCCAATCTGCAAGGCGTTGTAACCCTGTACCT‑GCGC‑CAGGTACAGCGGTAGCAGATAGATCGAGCCGTACAGGCCCACACCCATGCCCAGGCTGGCGATGCTCGACAGGCCAAAGTTGCGGTTGCCGAGGAt > 1:2109069/1‑150 (MQ=255) acaTGATCACCTCGCCAATCTGCAAGGCGTTTTAACCCTGTACCT‑GCGC‑CAGGTACAGCGGTAGCAGATAGATCGAGCCGTACAGGCCCACACCCATGCCCAGGCTGGCGATGCTCGACAGGCCAAAGTTGCGGTTGCCGAGGATACGCa > 2:1486481/1‑150 (MQ=255) acaTGATCACCTCGCCAATCTGCAAGGCGTTGTAACCCTGTACCT‑GCGC‑CAGGTACAGCGGTAGCAGATAGATCGAGCCGTACAGGCCCACACCCATGCCCAGGCTGGCGATGCTCGACAGGCCAAAGTTGCGGTTGCCGAGGATACGCa > 1:1067325/1‑150 (MQ=255) caTGATCACCTAGCCAATCTGCAAGGCGTTGTAACCCTGTACCT‑GCGC‑CAGGTACAGCGGTAGCAGATAGATCGAGCCGTACAGGCCCACACCCATGCCCAGGCTGGCGATGCTCGACAGGCCAAAGTTGCGGTTGCCGAGGATACGCAg < 1:1015443/150‑1 (MQ=255) aCCTCGCCAATCTGCAAGGCGTTGTAACCCTGTACCT‑CCGC‑CAGGTACAGCGGTAGCAGATAGATCGAGCCGTACAGGCCCACACCCATGCCCAGGCTGGCAATGCTCGACAGGCCAAAGTTGCGGTTGCCGAGGATACGCAGGTTGAtt > 1:149474/1‑149 (MQ=255) cTCGCCAATCTGCAAGGCGTTGTAACCCTGTACCT‑GCGC‑CAGGTACAGCGGTAGCAGATAGATCGAGCCGTACAGGCCCACACCCATGCCCAGGCTGGCGATGCTCGACAGGCCAAAGTTGCGGTTGCCGAGGATACGCAGGTTGATCAg > 2:810212/1‑150 (MQ=255) cTCGCCAATCTGCAAGGCGTTGTAACCCTGTACCT‑GCGC‑CAGGTACAGCGGTAGCAGATAGATCGAGCCGTACAGGCCCACACCCATGCCCAGGCTGGCGATGCTCGACAGGCCAAAGTTGCGGTTGCCGAGGATACGCAGGTTGATCAg > 2:1544636/1‑150 (MQ=255) tCGCCAATCTGCAAGGCGTTGTAACCCTGTACCT‑GCGC‑CAGGTACAGCGGTAGCAGATAGATCGAGCCGTACAGGCCCACACCCATGCCCAGGCTGGCGATGCTCGACAGGCCAAAGTTGCGGTTGcc > 2:937676/1‑128 (MQ=255) tCGCCAATCTGCAAGGCGTTGTAACCCTGTACCT‑GCGC‑CAGGTACAGCGGTAGCAGATAGATCGAGCCGTACAGGCCCACACCCATGCCCAGGCTGGCGATGCTCGACAGGCCAAAGTTGCGGTTGcc < 1:937676/128‑1 (MQ=255) tCGCCAATCTGCAAGGCGTTGTAACCCTGTACCT‑GCGC‑CAGGTACAGCGGTAGCAGATAGATCGAGCCGTACAGGCCCACACCCATGCCCAGGCTGGCGATGCTCGACAGGCCAAAGTTGCGGTTGCCGAGGATACGCAGGTTGATCAGc > 2:1660859/1‑150 (MQ=255) cGCCAATCTGCAAGGCGTTGTAACCCTGTACCT‑GCGC‑CAGGTACAGCGGTAGCAGATAGATCGAGCCGTACAGGCCCACACCCATGCCCAGGCTGGCGATGCTCGACAGGCCAAAGTTGCGGTTGCCGAGGATACGCAGGTTGATCAGCg < 1:1521050/150‑1 (MQ=255) gCCAATCTGCAAGGCGTTGTAACCCTGTACCT‑GCGC‑CAGGTACAGCGGTAGCAGATAGATCGAGCCGTACAGGCCCACACCCATGCCCAGGCTGGCGATGCTCGACAGGCCAAAGTTGCGGTTGCCGAGGATACGCAGGTTGATCAGCgg > 1:1769988/1‑150 (MQ=255) cAATCTGCAAGGCGTTGTAACCCTGTACCT‑GCGC‑CAGGTACAGCGGTAGCAGATAGATCGAGCCGTACAGGCCCACACCCATGCCCAGGCTGGCGATGc > 1:497449/1‑99 (MQ=255) cAATCTGCAAGGCGTTGTAACCCTGTACCT‑GCGC‑CAGGTACAGCGGTAGCAGATAGATCGAGCCGTACAGGCCCACACCCATGCCCAGGCTGGCGATGc < 2:497449/99‑1 (MQ=255) cAATCTGCAAGGCGTTGTAACCCTGTACCT‑GCGC‑CAGGTACAGCGGTAGCAGATAGATCGAGCCGTACAGGCCCACACCCATGCCCAGGCTGGCGATGCTCGGGATTCCAAAGTTGCGGTTGCCGAGGATACGCAGGTTGATCAGCGGGt > 1:1468423/1‑150 (MQ=255) aaTCTGCAAGGCGTTGTAACCCTGTACCT‑GCGC‑CAGGTACAGCGGTAGCAGATAGATCGAGCCGTACAGGCCCACACCCATGCCCAGGCTGGCGATGCTCGACAGGCCAAAGTTGc > 1:376608/1‑116 (MQ=255) aaTCTGCAAGGCGTTGTAACCCTGTACCT‑GCGC‑CAGGTACAGCGGTAGCAGATAGATCGAGCCGTACAGGCCCACACCCATGCCCAGGCTGGCGATGCTCGACAGGCCAAAGTTGc < 2:376608/116‑1 (MQ=255) aTCTGCAAGGCGTTGTAACCCTGTACCT‑GCGC‑CAGGTACAGCGGTAGCAGATAGATCGAGCCGTACAGGCCCACACCCATGCCCAGGCTGGCGATGCTCGACAGGCCAAAGTTGCGGTTGCCGAGGATACGCAGGTTGATCAGCGGGTGa < 2:1626992/150‑1 (MQ=255) tGCAAGGCGTTGTAACCCTGTACCT‑GCGC‑CAGGTACAGCGGTAGCAGATAGATCGAGCCGTACAGGCCCACACCCATGCCCTGGCTGGCGATGCTCGACAGTCCAAAGTTGCGGTTGCCGAGGATACGCAGGTTGATCAGCGGGTGAGGc < 2:881834/150‑1 (MQ=255) gCAAGGCGTTGTAACCCTGTACCT‑GCGC‑CAGGTACAGCGGTAGCAGATAGATCGAGCCGTACAGGCCCACACCCATGCCCAGGCTGGCGATGCTCGACAGGCCACAGTTGCGGTTGCCGAGGATACGCAGGTTGATCAGCGGGTGAGGCt > 1:753258/1‑150 (MQ=255) cAAGGCGTTGTAACCCTGTACCT‑GCGC‑CAGGTACAGCGGTAGCAGATAGATCGAGCCGTACAGGCCCACACCCATGCCCAGGCTGGCGATGCTCGACAGGCCAAAGTTGCGGTTGCCGAGGATACGCAGGTTGATCAGCGGGTGAGGCtt < 1:620746/150‑1 (MQ=255) aaGGCGTTGTAACCCTGTACCT‑GCGA‑CAGGTACAGCGGTAGCAGATAGATCGAGCCGTACAGGCCCACACCCATGCCCAGGCTGGCGATGCTCGACAGGCCAAAGTTGCGGTTGCCGAGGATACGCAGGTTGATCAGCGGGTGAGGCTTg < 1:1660859/150‑1 (MQ=255) gCGTTGTAACCCTGTACCT‑GCGC‑CAGGTACAGCGGTAGCAGATAGATCGAGCCGTACAGGCCCACACCCATGCCCAGGCTGGCGATGCTCGACAGGCCAAAGTTGCGGTTGCCGAGGATACGCAGGt > 2:401681/1‑127 (MQ=255) ttGTACCCCTGTACCC‑GAGA‑TAGGTACAGCGGTAGCAGATAGACCGAGCCGTACAGGCTTACACTCATGACCGGGCGGGCGATGCTCGACAGGTCAAAGTCGGGGTTGAAGAGGCTACGCGGGTTGATGTTCGGGTGGGGCTTGGAATAc < 2:108845/150‑1 (MQ=255) ttGTAACCCTGTACCT‑GCGC‑CAGGTACAGCGGTAGCAGATAGATCGAGCCGTACAGGCCCACACCCATGCCCAGGCTGGCGATGCTCGACAg < 2:2123417/92‑1 (MQ=255) tAACCCTGTACCT‑GCGC‑CAGGTACAGCGGTAGCAGATAGATCGAGCCGTACAGGCCCACACCCATGCCCAGGCTGGCGATGCTCGACAGGCCAAAGTTGCGGTTGCCGAGGATACGCAGGTTGATCAGCGGGTGAGGCTTGGAAAGCTGc < 2:1339066/150‑1 (MQ=255) aaCCCTGTACCT‑GCGC‑CAGGTACAGCGGTAGCAGATAGATCGAGCCGTACAGGCCCACACCCATGCCCAGGCTGGCGATGCTCGACAGGCCAAAGTTGCGGTTGCCGAGGATACGCATGTTGATCAGCGGGTGAGGCTTGGAACACTGCa > 2:1933965/1‑150 (MQ=255) aaCCCTGTACCT‑GCGC‑CAGGTACAGCGGTAGCAGATAGATCGAGCCGTACAGGCCCACACCCATGCCCAGGCTGGCGATGCTCGACAGGCCAAAGTTGCGGTTGCCGAGGATACGCAGGTTGATCAGCGGGTGAGGCTTGGAAAACTGCa < 1:957574/150‑1 (MQ=255) aaCCCTGTACCT‑GCGC‑CAGGTACAGCGGTAGCAGATAGATCGAGCCGTACAGGCCCACACCCATGCCCAGGCTGGCGATGCTCGACAGGCCAAAGTTGCGGTTGCCGAGGATACGCAGGTTGATCAGCGGGTGAGGCTTGGAAAACTGCa < 1:40104/150‑1 (MQ=255) aaCCCTGTACCT‑GCGC‑CAGGTACAGCGGTAGCAGATAGATCGAGCCGTACAGGCCCACACCCATGCCCAGGCTGGCGATGCTCGACAGGCCAAAGTTGCGGTTGCCGAGGATACGCAGGTTGATCAGCGGGTGAGGCTTGGAAAACTGCa < 1:810212/150‑1 (MQ=255) aCCCTGTACCT‑GCGC‑CAGGTACAGCGGTAGCAGATAGATCGAGCCGTACAGGCCCACACCCATGCCCAGGCTGGCGATGCTCGACAGGCCAAAGTTGCGGTTGCCGAGGATACGCAGGTTGATCAGCGGGTGAGGCTTGGAAAACTGCAg < 2:1769988/150‑1 (MQ=255) aCCCTGTACCT‑GCGC‑CAGGTACAGCGGTAGCAGATAGATCGAGCCGTACAGGCCCACACCCATGCCCAGGCTGGCGATGCTCGACAGGCCAAAGTTGCGGTTGCCGAGGATACGCAGGTTGATCAGCGGGTGAGGCTTGGAAAACTGCAg < 1:1452715/150‑1 (MQ=255) cgcTGTACCT‑G‑GCGCAGGTACAGCGGTAGCAGATAGATCGAGCCGTACAGGCCCACACCCATGCCCAGGCTGGCGATGCTCGACAGGCCAAAGTTGCGGTTGCCGAGGATACGCAGGTTGATCAGCGGGTGAGGCTTGGAAAACTGCAgg > 2:650763/3‑150 (MQ=255) gcTGTACCT‑GGCG‑CAGGTACAGCGGTAGCAGATAGATCGAGCCGTACAGGCCCACACCCATGCCCAGGCTGGCGATGCTCGACAGGCCAAAGTTGCGGt < 1:130729/98‑1 (MQ=255) cTGTACCT‑GGCG‑CAGGTACAGCGGTAGCAGATAGATCGAGCCGTACAGGCCCACACCCATGCCCAGGCTGGCGATGCTCGACAGGCCAAAGTTGCGGTTGCCGAGGATAc < 1:2141364/110‑1 (MQ=255) cTGTACCT‑GCGC‑CAGGTACAGCGGTAGCAGATAGATCGAGCCGTACAGGCCCACACCCATGCCCAGGCTgg < 1:1571157/71‑1 (MQ=255) cTGTACCT‑GCGC‑CAGGTACAGCGGTAGCAGATAGATCGAGCCGTACAGGCCCACACCCATGCCCAGGCTgg > 2:1571157/1‑71 (MQ=255) cTGTACCT‑G‑GCGCAGGTACAGCGGTAGCAGATAGATCGAGCCGTACAGGCCCACACCCATGCCCAGGCTGGCGATGCt < 2:1080760/78‑1 (MQ=39) cTGTACCT‑G‑GCGCAGGTACAGCGGTAGCAGATAGATCGAGCCGTACAGGCCCACACCCATGCCCAGGCTGGCGATGCt > 1:1080760/1‑78 (MQ=39) tGTACCTGGCG‑‑CAGGTACAGCGGTAGCAGATAGATCGAGCCGTACAGGCCCACACCCATGCCCAGGCTGGCGATGCTCGACAGGCCAAAGTTGCGGTTGCCGAGGATACGCAGGTTGATCAGCGGGTGAGGCTTGGAAAACTGCAGGATg > 1:2016959/1‑150 (MQ=255) tGTACCT‑GCGC‑CAGGTACAGCGGTAGCAGATAGATCGAGCCGTACAGGCCCACACCCATGCCCAGGCTGGCGATGCTCGa > 1:2242908/1‑80 (MQ=255) tGTACCT‑GCGC‑CAGGTACAGCGGTAGCAGATAGATCGAGCCGTACAGGCCCACACCCATGCCCAGGCTGGCGATGCTCGa < 2:2242908/80‑1 (MQ=255) tGTACCT‑GCGC‑CAGGTACAGCGGTAGCAGATAGATCGAGCCGTACAGGCCCACACCCATGCCCAGGCTGGCGATGCTCGACAGGCCAAAGTTGCGGTTGCCGAGGATACGCAg > 2:141316/1‑113 (MQ=255) tGTACCT‑GCGC‑CAGGTACAGCGGTAGCAGATAGATCGAGCCGTACAGGCCCACACCCATGCCCAGGCTGGCGATGCTCGACAGGCCAAAGTTGCGGTTGCCGAGGATACGCAg < 1:141316/113‑1 (MQ=255) ccT‑GCGC‑CAGGTACAGCGGTAGCAGATAGATCGAGCCGTACAGGCCCACACCCATGCCCAGGCTGGCGATGCCCGCACGTTTTAAGTTGCGGTTGCCGAGGATACGCAGGTTGAACAACGGCTGATGCTTGGAAAACTGCAGGATGAAGa > 1:1621543/1‑150 (MQ=255) cT‑GCGC‑CAGGTACAGCGGTAGCAGATAGATCGAGCCGTACAGGCCCACACCCATGCCCAGGCTGGCGATGCTCGACAGGCCAAAGTTGCGGTTGCCGAGGATACGCAGGTTGATCAGCGGGTGAGGCTTGGAAAACTGCa < 2:1546111/140‑1 (MQ=255) | AACAGGCAAAACCCCAGCGCGCATAGTACCTTGGGCGATATCACCTTCATCAGTTGCGGCACCAGCGGGATCAGGAACAGCTGCGGAATACCCATCCACATGATCACCTCGCCAATCTGCAAGGCGTTGTAACCCTGTACCT‑GCGC‑CAGGTACAGCGGTAGCAGATAGATCGAGCCGTACAGGCCCACACCCATGCCCAGGCTGGCGATGCTCGACAGGCCAAAGTTGCGGTTGCCGAGGATACGCAGGTTGATCAGCGGGTGAGGCTTGGAAAACTGCAGGATGACGAAG > NC_002947/2237578‑2237868 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |