New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	86795 =	80 (0.900)	5 (0.060) +CTCCACCGCGT	5/224	NT	7.2%	intergenic (‑78/+67)	PP_0075/PP_0076	choline sulfate transporter/choline betaine‑binding protein
	?	NC_002947	3963073 =	62 (0.700)					intergenic (+75/+42)	PP_3492/PP_3493	acyl‑CoA dehydrogenase/LysR family transcriptional regulator

CTGTGGGAGCGGGCGCGCCCGCGAACACCGGCAAAGCCGGTGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/86838‑86795 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CGCCCGCTCCCACAGGAATGTCACCGCGGCAAACTTCTCGCCTCAGCGCCAATACCGCGCATCATCCACCACCCTGGCATGCCCCTCGAACAGCGC  >  NC_002947/3963073‑3963168                                             |||||||||||                                                                                                 CTGTGGGAGCGGGCGCGCCCGCGAACACCGGCAAAGCCGGTGCCCTCCACCGCGTCGCCCGCTCCCCCAGGAATGTCACCGCGGCAAA                                                                 <  1:360936/88‑1 CTGTGGGAGCGGGCGCGCCCGCGAACACCGGCAAAGCCGGTGCCCTCCACCGCGTCGCCCGCTCCCCCAGGAATGTCACCGCGGCAAA                                                                 >  2:360936/1‑88  TGTAGGAGTGGGCGCGCCCGCGAGCACCGGCAAAGCTCGTGCCCTCCACCCCGTCGCCCGCTCCCACAGGAATGTCACCGCGGCAAACTTCTCGCCTCAGCACGAATACCGCGCATTATCCACCACCCTGGCATGCCCCCCGAACAGCGC  >  2:642843/1‑150             GCGCGCCCGCGAACACCGGCAAAGCCGGTGCCCTCCACCGCGTCGCCCGCTCCCACAGGAATGTCACCGCGGCAAACTTCTCGCCTCAGCGCCAATACCGCGCATCATCCACCACCCTGGCA                   >  1:187687/1‑122             GCGCGCCCGCGAACACCGGCAAAGCCGGTGCCCTCCACCGCGTCGCCCGCTCCCACAGGAATGTCACCGCGGCAAACTTCTCGCCTCAGCGCCAATACCGCGCATCATCCACCACCCTGGCA                   <  2:187687/122‑1                      CGAACACCGGCAAAGCCGGTGCCCTCCACCGCGTC                                                                                                 <  2:2402866/35‑1                                             |||||||||||                                                                                                 CTGTGGGAGCGGGCGCGCCCGCGAACACCGGCAAAGCCGGTGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/86838‑86795 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CGCCCGCTCCCACAGGAATGTCACCGCGGCAAACTTCTCGCCTCAGCGCCAATACCGCGCATCATCCACCACCCTGGCATGCCCCTCGAACAGCGC  >  NC_002947/3963073‑3963168

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.