| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 282304 | 101 (1.140) | 6 (0.070) | 6/244 | NT | 5.2% | intergenic (+23/‑247) | PP_0228/betT‑II | serine acetyltransferase/choline/carnitine/betaine transporter |
| ? | NC_002947 | = 282379 | 117 (1.330) | intergenic (+98/‑172) | PP_0228/betT‑II | serine acetyltransferase/choline/carnitine/betaine transporter | |||||
CTGGACTGCCAGGACAAGAACTGATCCCGCAGTGCAATTGCCTGTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/282258‑282304‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cCGGCCTTTTCGCGGGTTAGCCCTCCCCTACATTGGTATGTTCTTTGTAGGAGCGGGCTTGCCCGCGAAGAGGCCAGCACAGGCAATTGCACTGCGGGATCAGTTCTTGTCCTGGCAGTCCAGCTGCAGGTTGGCCTGAGTAATGTTGCT < NC_002947/282379‑282231 CTGGACTGCCAGGACAAGAACTGATCCCGCAGTGCAATTGCCTGTGCCGGCCTTTTCGCGGGTTAGCCCTCCCCTACATTGGTATGTTCTTTGTAGGAGCGGGCTTGCCCGCGAAGAG < 1:610610/118‑1CTGGACTGCCAGGACAAGAACTGATCCCGCAGTGCAATTGCCTGTGCCGGCCTTTTCGCGGGTTAGCCCTCCCCTACATTGGTATGTTCTTTGTAGGAGCGGGCTTGCCCGCGAAGAG > 2:610610/1‑118 AAGAACTGATCCCGCAGTGCAATTGCCTGTGCCGGCCTTTTCGCGGGTTAGCCCTCCCCTACATTGGTATGTTCTTTGTAGGAGCGGGCTTGCCCGC < 1:1677829/97‑1 AAGAACTGATCCCGCAGTGCAATTGCCTGTGCCGGCCTTTTCGCGGGTTAGCCCTCCCCTACATTGGTATGTTCTTTGTAGGAGCGGGCTTGCCCGC > 2:1677829/1‑97 TCCCGCAGTGCAATTGCCTGTGCTGGCCTTTTCGCGGGTTAGCCCTCCCCTACATTGGTATGTTCTTTGTAGGAGCGGGCTTGCCCGCGAAGAGGCCA < 1:577964/98‑1 TCCCGCAGTGCAATTGCCTGTGCTGGCCTTTTCGCGGGTTAGCCCTCCCCTACATTGGTATGTTCTTTGTAGGAGCGGGCTTGCCCGCGAAGAGGCCA > 2:577964/1‑98 CCGGCCTTTTCGCGGGTTAGCCCTCCCCTACATTGGTATGTTCTTTGTAGGAGCGGGCTTGCCCGCGAAGAGGCCAGCACAGGCAATTGCACTGCGGGATCAGTTCTTGTCCTGGCAGTCCAGCTGCAGGTTGGCCTGAGTAATGTTGCT < 1:1394449/150‑1 CTGGACTGCCAGGACAAGAACTGATCCCGCAGTGCAATTGCCTGTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/282258‑282304‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cCGGCCTTTTCGCGGGTTAGCCCTCCCCTACATTGGTATGTTCTTTGTAGGAGCGGGCTTGCCCGCGAAGAGGCCAGCACAGGCAATTGCACTGCGGGATCAGTTCTTGTCCTGGCAGTCCAGCTGCAGGTTGGCCTGAGTAATGTTGCT < NC_002947/282379‑282231 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |