New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 31000184 (0.950)13 (0.160) 12/228 NT 13.1% intergenic (‑166/+31) PP_0255/PP_0256 hypothetical protein/putative oxidoreductase
?NC_002947 = 310014 95 (1.160)intergenic (‑179/+18) PP_0255/PP_0256 hypothetical protein/putative oxidoreductase

CCTCATAGGGATGACGAGGCGAATTTGAGGCTAAGAGGCGTGGCTGGCAACGGAAATCCGACGAGTAACACGAGTTGTACACAATTCTCTAACTTGCTGTATTTACTATGAAACTTTATCGTTTTCAGGCTGTCTGAGACCTTTATGACAAAGCCCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/309844‑310001
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaagccctgTTCCGTGGCGGCTCAGGGCTTTGTCATAAAGGTCTCAGACAGCCTGAAAACGATAAAGTTTCATAGTAAATACAGCAAGTTAGAGAATTGTGTACAACTCGTGTTACTCGTCGGATTTCCGTTGCCAGCCACGCCTCTTAGCCTCAAAT  <  NC_002947/310014‑309866
                                                                                                                                                                                                                                                                                                                   
CCTCATAGGGATGACGAGGCGAATTTGAGGCTAAGAGGCGTGGCTGGCAACGGAAATCCGACGAGTAACACGAGTTGTACACAATTCTCTAACTTGCTGTATTTACTATGAAACTTTATCGTTTTCAGGCTGTCTGAGACCTTTATGACA                                                                                                                                                               >  2:1594933/1‑150
 CTCATAGGGATGACGAGGCGAATTTGAGGCTAAGAGGCGTGGCTGGCAACGGAAATCCGACGAGTAACACGAGTTGTACACAATTCTCTAACTTGCTGTATTTACTATGAAACTTTATCGTTTTCAGGCTGTCTGAGACCTTTATGACAA                                                                                                                                                              >  2:1874429/1‑150
   CATAGGGATGACGAGGCGAATTTGAGGCGAAGATGCTTCGCTTGCAACGGAAATCCCTCTCGTCACGCTGGCTGTACACAATTCTCTAACTTGCTGTATTTACTATGAAACTTTATCGTTTTCAGGCTGTCTGAGACCTTTATGACAAAG                                                                                                                                                            <  1:1251339/150‑1
    ATAGGGATGACGAGGCGAATTTGAGGCTAAGAGGCGTGGCTGGCAACGGAAATCCGACGAGTAACACGAGTTGTACACAATTCTCTAACTTGCTGTATTTACTATGAAACTTTATCGTTTTCAGGCTGTCTGAGACCTTTATGACAAAGC                                                                                                                                                           >  2:1990971/1‑150
        GGATGACGAGGCGAATTTGAGGCTAAGAGGCGTGGCTGGCAACGGAAATCCGACGAGTAACACGAGTTGTACACAATTCTCTAACTTGCTGTATTTACTATGAAACTTTATCGTTTTCAGGCTGTCTGAGACCTTTATGACAAAGCCCTG                                                                                                                                                       >  2:2204432/1‑150
        GGATGACGAGGCGAATTTGAGGCTAAGAGGCGTGGCTGGCAACGCAAATCCGACGAGTAACACGAGTTGTACACAATTCTCTAACTTGCTGTATTTACTATGAAACTTTATCGTTTTCAGGCTGTCTGAGACCTTTATGACAAAGCCCTG                                                                                                                                                       <  2:905599/150‑1
                  GCGAATTTGAGGCTAAGAGGCGTGGCTGGCAACGGAAATCCGACGAGTAACACGAGTTGTACACAATTCTCTAACTTGCTGTATTTACTATGAAACTTTATCGTTTTCAGGCTGTCTGAGACCTTTATGACAAAGCC                                                                                                                                                          <  2:983820/137‑1
                  GCGAATTTGAGGCTAAGAGGCGTGGCTGGCAACGGAAATCCGACGAGTAACACGAGTTGTACACAATTCTCTAACTTGCTGTATTTACTATGAAACTTTATCGTTTTCAGGCTGTCTGAGACCTTTATGACAAAGCC                                                                                                                                                          >  1:983820/1‑137
                        TTGAGGCTAAGAGGCGTGGCTGGCAACGGAAATCCGACGAGTAACACGAGTTGTACACAATTCTCTAACTTGCTGTATTTACTATGAAACTTTATCGTTTTCAGGCTGTCTGAGACCTTTATGAAAAAGCCCTGTTCCGTGGCGGCTCAG                                                                                                                                       <  2:534368/150‑1
                              CTAAGAGGCGTGGCTGGCAACGGAAATCCGACGAGTAACACGAGTTGTACACAATTCTCTAACTTGCTGTATTTACTATGAAACTTTATCGTTTTCAGGCTGTCTGAGACCTTTATGACAAAGCCCTGTTCCGTGGCGGCTCAGGGCTTT                                                                                                                                 <  1:2161051/150‑1
                                  GAGGCGTGGCTGGCAACGGAAATCCGACGAGTAACACGAGTTGTACACAATTCTCTAACTTGCTGTATTTACTATGAAACTTTATCGTTTTCAGGCTGTCTGAGACCTTTATGACAAAGCCCTGTTCCGTGGCGGCTCAGGGCTTTGTCA                                                                                                                             <  1:437500/150‑1
                                                AACGGAAATCCGACGAGTAACACGAGTTGTACACAATTCTCTAACTTGCTGTATTTACTATGAAACTTTATCGTTTTCAGGCTGTCTGAGACCTTTATGACAAAGCCCTGTTCCGTGGCGGCTCAGG                                                                                                                                      <  2:1332298/127‑1
                                                AACGGAAATCCGACGAGTAACACGAGTTGTACACAATTCTCTAACTTGCTGTATTTACTATGAAACTTTATCGTTTTCAGGCTGTCTGAGACCTTTATGACAAAGCCCTGTGCCGTGGCGGCTCAGG                                                                                                                                      >  1:1332298/1‑127
                                                                                  AATTCTCTAACTTGCTGTATTTACTATGAAACTTTATCGTTTTCAGGCTGTCTGAGACCTTTATGAAAAAGCCCTGTTCCGTGGCGGCTCAGG                                                                                                                                      <  1:1295252/93‑1
                                                                                  AATTCTCTAACTTGCTGTATTTACTATGAAACTTTATCGTTTTCAGGCTGTCTGAGACCTTTATGAAAAAGCCCTGTTCCGTGGCGGCTCAGG                                                                                                                                      >  2:1295252/1‑93
                                                                                                             GAAACTTTATCGTTTTCAGGCTGTCTGAGACCTTTATGACAAAGCCCTGTTCCGTGGCGGCTCA                                                                                                                                        <  2:212950/64‑1
                                                                                                             GAAACTTTATCGTTTTCAGGCTGTCTGAGACCTTTATGACAAAGCCCTGTTCCGTGGCGGCTCA                                                                                                                                        >  1:212950/1‑64
                                                                                                                                  TGTCTGAGACCTTTATGACAAAGCCCTGTTCCGTGGCGGCTCAGGGCTTTGTCATAAAGGTCTCAGACAGCCTGAAAACGATAAAGTTTCATAGTAAATACAGCAAGTTAGAGAATTGTGTACAACTCGTGTTACTCGTCGGATTTCC                               >  1:1845347/1‑148
                                                                                                                                  TGTCTGAGACCTTTATGACAAAGCCCTGTTCCGTGGCGGCTCAGGGCTTTGTCATAAAGGTCTCAGACAGCCTGAAAACGATAAAGTTTCATAGTAAATACAGCAAGTTAGAGAATTGTGTACAACTCGTGTTACTCGTCGGATTTCC                               <  2:1845347/148‑1
                                                                                                                                              TTATGACAAAGCCCTGAGCCGCCACGGAACAGGGCTTTGTCATAAAGGTCTCAGACAGCCTGAAAACGATAAAGTTTCATAGTAAATACAGCAAGTTAGAGAATTGTGTACAACTCGTG                                                >  2:1612556/1‑119
                                                                                                                                              TTATGACAAAGCCCTGAGCCGCCACGGAACAGGGCTTTGTCATAAAGGTCTCAGACAGCCTGAAAACGATAAAGTTTCATAGTAAATACAGCAAGTTAGAGAATTGTGTACAACTCGTG                                                <  1:1612556/119‑1
                                                                                                                                                      AAGCCCTGTTCCGTGGCGGCTCAGGGCTTTGTCATAAAGGTCTCAGACAGCCTGAAAACGATAAAGTTTCATAGTAAATACAGCAAGTTAGAGAATTGTGTACAACTCGTGTTACTCGTCGGATTTCCGTTGCCAGCCACGCCTCTTAGC         <  1:608546/150‑1
                                                                                                                                                        GCCCTGTTCCGTGGCGGCTCAGGGCTTTGTCATAAAGGTCTCAGACAGCCTGAAAACGATAAAGTTTCATAGTAAATACAGCAAGTTAGAGAATTGTGTACAACTCGTGTTACTCGTCGGATTTCCGTTGCCAGCCACGCCTCTTAGCCT       <  2:1275335/150‑1
                                                                                                                                                          CCTGTTCCGTGGCGGCTCAGGGCTTTGTCATAAAGGTCTCAGACAGCCTGAAAACGATAAAGTTTCATAGTAAATACAGCAAGTTAGAGAATTGTGTACAACTCGTGTTACTCGTCGGATTTCCGTTGCCAGCCACGCCTCTTAGCCTCA     >  2:1378012/1‑150
                                                                                                                                                          CCTGTTCCGTGGCGGCTCAGGGCTTTGTCATAAAGGTCTCAGACAGCCTGAAAACGATAAAGTTTCATAGTAAATACAGCAAGTTAGAGAATTGTGTACAACTCGTGTTACTCGTCGGATTTCCGTTGCCAGCCACGCCTCTTAGCCTCA     >  2:1384349/1‑150
                                                                                                                                                           CTGTTCCGTGGCGGCTCAGGGCTTTGTCATAAAGGTCTCAGACAGCCTGAAAACGATAAAGTTTCATAGTAAATACAGCAAGTTAGAGAATTGTGTACAACTCGTGTTACTCGTCGGATTTCCGTTGCCAGCCACGCCTCTTAGCCTCAA    >  2:2182216/1‑150
                                                                                                                                                            TGTTCCGTGGCGGCTCAGGGCTTTGTCATAAAGGTCTCAGACAGCCTGAAAACGATAAAGTTTCATAGTAAATACAGCAAGTTAGAGAATT                                                              <  2:1841164/91‑1
                                                                                                                                                            TGTTCCGTGGCGGCTCAGGGCTTTGTCATAAAGGTCTCAGACAGCCTGAAAACGATAAAGTTTCATAGTAAATACAGCAAGTTAGAGAATT                                                              >  1:1841164/1‑91
                                                                                                                                                             GTTCCGTGGCGGCTCAGGGCTTTGTCATAAAGGTCTCAGACAGCCTGAAAACGATAAAGTTTCATAGTAAATACAGCAAGTTAGAGAATTGTGTACAACTCGTGTTACTCGTCGGATTTCCGTTGCCAGCCACGCCTCTTAGCCTCAAAT  <  1:1057791/150‑1
                                                                                                                                                             GTTCCGTGGCGGCTCAGGGCTTTGTCATAAAGGTCTCAGACAGCCTGAAAACGATAAAGTTTCATAGTAAATACAGCAAGTTAGAGAATTGTGTACAACTCGTGTTACTCGTCGGATTTCCGTTGCCAGCCACGCCTCTTAGCCTCAAAT  <  1:360781/150‑1
                                                                                                                                                                                                                                                                                                                   
CCTCATAGGGATGACGAGGCGAATTTGAGGCTAAGAGGCGTGGCTGGCAACGGAAATCCGACGAGTAACACGAGTTGTACACAATTCTCTAACTTGCTGTATTTACTATGAAACTTTATCGTTTTCAGGCTGTCTGAGACCTTTATGACAAAGCCCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/309844‑310001
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaagccctgTTCCGTGGCGGCTCAGGGCTTTGTCATAAAGGTCTCAGACAGCCTGAAAACGATAAAGTTTCATAGTAAATACAGCAAGTTAGAGAATTGTGTACAACTCGTGTTACTCGTCGGATTTCCGTTGCCAGCCACGCCTCTTAGCCTCAAAT  <  NC_002947/310014‑309866

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.