| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 342930 = | 97 (1.100) | 7 (0.080) | 7/230 | NT | 7.3% | intergenic (+58/+74) | gabP‑I/PP_5439 | gamma‑aminobutyrate permease/hypothetical protein |
| ? | NC_002947 | 342979 = | 88 (1.060) | intergenic (+107/+25) | gabP‑I/PP_5439 | gamma‑aminobutyrate permease/hypothetical protein | |||||
TGATGAGTTCCAGGACGCCTATATCGCCGCTTCCGAACTGGTGGCCAAGCAGCAGCAACAGCAGAAGCAGTTCGGCTGACAGGGCCATATAACCCGCTCCTACGGGCCTGTGGTGAACCTGCGGGCTTGCCCGCGAAAGGGCCATCACAGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/343082‑342930‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cacaggccCGTAGGAGCGGGTTATATGGCCCTGTCAGCCGAACTGCTTCTGCTGTTGCTGCTGCTTGGCCACCAGTTCGGAAGCGGCGATATAGGCGTCCTGGAACTCATCACTCTCCAGCCAGGCCATGGTGGTCTCTTCGTCAGCGCCATCCAGC > NC_002947/342979‑343127 TGATGAGTTCCAGGACGCCTATATCGCCGCTTCCGAACTGGTGGCCAAGCAGCAGCAACAGCAGAAGCAGTTCGGCTGACAGGGCCATATAACCCGCTCCTACGGGCCTGTGGTGAACCTGCGGGCTTGCCCGCGAAAGGGCCATCACAG < 2:242426/150‑1TGATGAGTTCCAGGACGCCTATATCGCCGCTTCCGAACTGGTGGCCAAGCAGCAGCAACAGCAGAAGCAGTTCGGCTGACAGGGCCATATAACCCGCTCCTACGGGCCTGTGGTGAACCTGCGGGCTTGCCCGCGAAAGGGCCATCACAG < 1:2282202/150‑1 TGAGTTCCAGGACGCCTATATCGCCGCTTCCGAACTGGTGGCCAAGCAGCAGCAACAGCAGAAGCAGTTCGGCTGACAGGGCCATATAACCCGCTCCTACGGGCCTGTGGTGAACCTGCGGGCTTGCCCGCGAAAGGGCCATCACAGGCC > 1:861809/1‑150 GCCGCTTCCGAACTGGTGGCCAAGCAGCAGCAACAGCAGAAGCAGTTCGGCTGACAGGGCCATATAACCCGCTCCTACGGGCCTGTGGTGAACCTGCGGGCTTGCCCGCGAAAGGGCCATCAC < 1:2005979/123‑1 GCCGCTTCCGAACTGGTGGCCAAGCAGCAGCAACAGCAGAAGCAGTTCGGCTGACAGGGCCATATAACCCGCTCCTACGGGCCTGTGGTGAACCTGCGGGCTTGCCCGCGAAAGGGCCATCAC > 2:2005979/1‑123 AACTGGTGGCCAAGCAGCAGCAACAGCAGAAGCAGTTCGGCTGACAGGGCCATATAACCCGCTCCTACGGGCCTGTGGTGAACCTGCGGGCTTGCCCGCGAAAGGGCCATCACAG < 1:1565581/115‑1 AACTGGTGGCCAAGCAGCAGCAACAGCAGAAGCAGTTCGGCTGACAGGGCCATATAACCCGCTCCTACGGGCCTGTGGTGAACCTGCGGGCTTGCCCGCGAAAGGGCCATCACAG > 2:1565581/1‑115 CAACAGCAGAAGCAGTTCGGCTGACAGGGCCATATAACCCGCTCCTACGGGCCTGTAGTGAACCTGCGGGCTTGCCCGCGAAAGGGCCATCACA > 2:212643/1‑94 CAACAGCAGAAGCAGTTCGGCTGACAGGGCCATATAACCCGCTCCTACGGGCCTGTAGTGAACCTGCGGGCTTGCCCGCGAAAGGGCCATCACA < 1:212643/94‑1 AACAGCAGAAGCAGTTCGGCTGACAGGGCCATATAACCCGCTCCTACGGGCCTGTGGTGAACCTGCGGGCTTGCCCGCGAAAGGGCCATC < 2:2313582/90‑1 AACAGCAGAAGCAGTTCGGCTGACAGGGCCATATAACCCGCTCCTACGGGCCTGTGGTGAACCTGCGGGCTTGCCCGCGAAAGGGCCATC > 1:2313582/1‑90 CTACGGGCCTGTGGTGAACCTGCGGGCTTGCCCGCGAAAGGGCCATCACAGGCCCGTAGGAGCGGGTTATATGGCCCTGTCAGCCGAACTGCTTCTGCTGTTGCTGCTGCTTGGCCACCAGTTCGGAAGCGGCGATATAGGCGTCCTGGA > 1:1182708/1‑150 GCCTGTGGTGAACCTGCGGGCTTGCCCGCGAAAGGGCCATCACAGGCCCGTAGGAGCGGGTTATATGGCCCTGTCAGCCGAACTGCTTCTGCTGTTGCTGCTGCTTGGCCACCAGTTCGGAAGCGGCGATATAGGCGTCCTGGAA < 1:438585/145‑1 GCCTGTGGTGAACCTGCGGGCTTGCCCGCGAAAGGGCCATCACAGGCCCGTAGGAGCGGGTTATATGGCCCTGTCAGCCGAACTGCTTCTGCTGTTGCTGCTGCTTGGCCACCAGTTCGGAAGCGGCGATATAGGCGTCCTGGAA > 2:438585/1‑145 TGTGGTGAACCTGCGGGCTTGCCCGCGAAAGGGCCATCACAGGCCCGTAGGAGCGGGTTATATGGCCCTGTCAGCCGAACTGCTTCCGCTGTTGCTGCTGCTTGGCCACCAGTTCGGAAGCGGCGATATAGGCGTCCTGGAACTCATCAC > 1:1448882/1‑150 TGGTGAACCTGCGGGCTTGCCCGCGAAAGGGCCATCACAGGCCCGTAGGAGCGGGTTATATGGCCCTGTCAGCCGAACTGCTTCTGCTGTTGCTGCTGCTTGGCCACCAGTTCGGAAGCGGCGATATAGGC > 2:166127/1‑131 TGGTGAACCTGCGGGCTTGCCCGCGAAAGGGCCATCACAGGCCCGTAGGAGCGGGTTATATGGCCCTGTCAGCCGAACTGCTTCTGCTGTTGCTGCTGCTTGGCCACCAGTTCGGAAGCGGCGATATAGGC < 1:166127/131‑1 AAGGGCCATCACAGGCCCGTAGGAGCGGGTTATATGGCCCTGTCAGCCGAACTGCTTCTGCTGTTGCTGCTGCTTGGCCACCAGTTCGGAAGCGGCGATATAGGCGTCCTGGAACTCATCACTCTCCAGCCAGGCCATGGTGGTCTCTTC < 2:1182708/150‑1 CACAGGCCCGTAGGAGCGGGTTATATGGCCCTGTCAGCCGAACTGCTTCTGCTGT < 2:1250320/55‑1 CACAGGCCCGTAGGAGCGGGTTATATGGCCCTGTCAGCCGAACTGCTTCTGCTGT > 1:1250320/1‑55 GCCCGTAGGAGCGGGTTATATGGCCCTGTCAGCCGAACTGCTTCTGCTGTTGCTGCTGCTTGGCCACCAGTTCGGAAGCGGCGATATAGGCGTCCTGGAACTCATCACTCTCCAGCCAGGCCATGGTGGTCTCTTCGTCAGCGCCATCCA < 1:242426/150‑1 GCCCGTAGGAGCGGGTTATATGGCCCTGTCAGCCGAACTGCTTCTGCTGTTGCTGCTGCTTGGCCACCAGTTCGGAAGCGGCGATATAGGCGTCCTGGAACTCATCACTCTCCAGCCAGGCCATGGTGGTCTCTTCGTCAGCGCCATCCA > 1:2074768/1‑150 CCCGTAGGGGCGGGTTATATGGCCCTGTCAGCCGAACTGCTTCTGCTGTTGCTGCTGCTTGGCCACCAGTTCGGAAGCGGCGATATAGGCGTCCTGGAACTCATCACTCTCCAGCCAGGCCATGGTGGTCTCTTCGTCAGCGCCATCCAG > 1:726428/1‑150 CCGTAGGAGCGGGTTATATGGCCCTGTCAGCCGAACTGCTTCTGCTGTTGCTGCTGCTTGGCCACCAGTTCGGAAGCGGCGATATAGGCGTCCTGGAACTCATCACTCTCCAGCCAGGCCATGGTGGTCTCTTCGTCAGCGCCATCCAGC > 1:376443/1‑150 CCGTAGGAGCGGGTTATATGGCCCTGTCAGCCGAACTGCTTCTGCTGTTGCTGCTGCTTGGCCACCAGTTCGGAAGCGGCGATATAGGCGTCCTGGAACTCATCACTCTCCAGCCAGGCCATGGTGGTCTCTTCGTCAGCGCCATCCAGC < 2:2285671/150‑1 TGATGAGTTCCAGGACGCCTATATCGCCGCTTCCGAACTGGTGGCCAAGCAGCAGCAACAGCAGAAGCAGTTCGGCTGACAGGGCCATATAACCCGCTCCTACGGGCCTGTGGTGAACCTGCGGGCTTGCCCGCGAAAGGGCCATCACAGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/343082‑342930‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cacaggccCGTAGGAGCGGGTTATATGGCCCTGTCAGCCGAACTGCTTCTGCTGTTGCTGCTGCTTGGCCACCAGTTCGGAAGCGGCGATATAGGCGTCCTGGAACTCATCACTCTCCAGCCAGGCCATGGTGGTCTCTTCGTCAGCGCCATCCAGC > NC_002947/342979‑343127 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |