| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 499197 = | 85 (0.960) | 10 (0.140) | 8/198 | NT | 11.5% | intergenic (+38/‑258) | uhpA/PP_0411 | two‑component system response regulator UhpA/polyamine ABC transporter ATP‑binding protein |
| ? | NC_002947 | 499284 = | 86 (1.210) | intergenic (+125/‑171) | uhpA/PP_0411 | two‑component system response regulator UhpA/polyamine ABC transporter ATP‑binding protein | |||||
CATCATCCGGATGGAAGATTTGTTGTAGGGATCGCCCTACAAGGATGGCGGGATTGGAATGCCCTTGCGAGCCAACCACGAAACCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCGGCTCAGCCATAGAGATCAGCAGGCCAGGCCCGTTCGCGGGCATGCCCGCTCCCAC‑‑A‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/499368‑499197‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcgcgggcatgcccgctcccac‑‑aGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCTTCCATCCGGATGATGGCATTCTCTCAGTACCCCCGATTTTCGGGCGCTTGCGTCTCTTCTACTCTTTTGCCTACGCA > NC_002947/499284‑499430 CATCATCCGGATGGAAGATGTGTTGTAGGGATCGCCCTACAAGGATGGCGTTATTGGAATGCCCTTGCTAGGCAACCACGAAACCTCTGGGAGCGGGCATGCCCGCGAAGAGGCCGGCTCAGCCATAGAGATCAGCAGGCCAGGCCCGTT > 1:1375966/1‑150 gCCGGATGGAAGATTTGTTGTAGGGATCGCCCTACAAGGATGGCGGGATTGGAATGCCCTTGCGAGCCAACCACGAAACCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCGGCTCAGCCATAGAGATCAGCAGGCCAGGCCCGTTCGCGG > 2:1655510/2‑150 TCCGGATGGAAGATTTGTTGTAGGGATCGCCCTACAAGGATGGCGGGATTGGAATGCCCTTGCGAGCCAACCACGAAACCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCGGCTCAGCCATAGAGATCAGCAGGCCAGGCCCGTTCGCGG < 1:1294286/150‑1 TCCGGATGGAAGATTTGTTGTAGGGATCGCCCTACAAGGATGGCGGGATTGGAATGCCCTTGCGAGCCAACCACGAAACCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCGGCTCAGCCATAGAGATCAGCAGGCCAGGCCCGTTCGCGG < 1:130270/150‑1 TCCGGATGGAAGATTTGTTGTAGGGATCGCCCTACAAGGATGGCGGGATTGGAATGCCCTTGCGAGCCAACCACGAAACCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCGGCTCAGCCATAGAGATCAGCAGGCCAGGCCCGTTCGCGG < 2:706937/150‑1 TCCGGATGGAAGATTTGTTGTAGGGATCGCCCTACAAGGATGGCGGGATTGGAATGCCCTTGCGAGCCAACCACGAAACCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCGGCTCAGCCATAGAGATCAGCAGGCCAGGCCCGTTCGCGG < 1:1828113/150‑1 TCCGGATGGAAGATTTGTTGTAGGGATCGCCCTACAAGGATGGCGGGATTGGAATGCCCTTGCGAGCCAACCACGAAACCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCGGCTCAGCCATAGAGATCAGCAGGCCAGGCCCGTTCGCGG < 1:2240924/150‑1 TCCGGATGGAAGATTTGTTGTAGGGAGCGCCCTACAAGGATGGCGGGATTGGAATGCCCTTGCGAGCCAACCACGAAACCTGTGGGAGCGGGCATTCCCGCGAAGAGGCCTGCTCTTCCATATAGATCAGCAGGCCAGGACCGTTCGCGG < 2:1128517/150‑1 GATGGAAGATTTGTTGTAGGGATCGCCCTACAAGGATGGCGGGATTGGAATGCCCTTGCGAGCCAACCACGAAACCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCGGCTCAGCCATAGAGATCAGCAGGCCAGGCCCGTTCGCGGGCAT > 2:961625/1‑150 GAAGATTTGTTGTAGGGATCGCCCTACAAGGATGGCGGGATTGGAATGCCCTTGCGAGCCAACCACGAAACCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCGGCTCAGCCATAGAGATCAGCAGGCCAGGCCCGTTCGCGGGCATGCCC > 2:2381906/1‑150 GAAGATTTGTTGTAGGGATCGCCCTACAAGGATGGCGGGATTGGAATGCCCTTGCGAGCCAACCACGAAACCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCGGCTCAGCCATAGAGATCAGCAGGCCAGGCCCGTTCGCGGGCATGCCC > 1:563964/1‑150 AAGATTTGTTGTAGGGATCGCCCTACAAGGATGGCGGGATTGGAATGCCCTTGCGAGCCAACCACGAAACCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCGGCTCAGCCATAGAGATCAGCAGGCCAGGCCCGTTCGCGGGCATGCCCG < 2:1856650/150‑1 AAGATTTGTTGTAGGGATCGCCCTACAAGGATGGCGGGATTGGAATGCCCTTGCGAGCCAACCACGAAACCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCGGCTCAGCCATAGAGATCAGCAGGCCAGGCCCGTTCGCGGGCATGCCCG > 2:1462742/1‑150 AGATTTGTTGTAGGGATCGCCCTACAAGGATGGCGGGATTGGAATGCCCTTGCGAGCCAACCACGAAACCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCGGCTCAGCCATAGAGATCAGCAGGCCAGGCCCGTTCGCGGGCATGCCCGC < 2:2228779/150‑1 tTTTGTTGTAGGGATCGCCCTACAAGGATGGCGGGATTGGAATGCCCTTGCGAGCCAACCACGAAACCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCGGCTCAGCCATAGAGATCAGCAGGCCAGGCCCGTTCGCGGGCATGCCCGCTC < 2:1748637/149‑1 TTGTAGGGATCGCCCTACAAGGATGGCGGGATTGGAATGCCCTTGCGAGCCAACCACGAAACCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCGGCTCAGCCATAGAGATCAGCAGGCCAGGCCCGTTCGCGGGCATGCCCGCTCCCAC‑‑A > 1:2408005/1‑150 TTGGAGGGATCGCCCTACAAGGATGGCGGGATTGGAATGCCCTTGCGAGCCAACCACGAAACTCGTCGGGGGTGTCATGCCCGCGAAGAGGCCGGCTCAGCCATAGAGATCAGCCGGCCAGGCCCGTTCGCGGGCATGCCCGCTCCCAC‑‑A < 2:804455/150‑1 TAGGGATCGCCCTACAAGGATGGCGGGATTGGAATGCCCTTGCGAGCCAACCACGAAACCTGTGGGAGCGGGCATACCCGCGAAGAGGCCGGCTCAGCCATAGAGATCAGCAGGCCAGGCCCGTTCGCGG > 2:1590765/1‑130 TAGGGATCGCCCTACAAGGATGGCGGGATTGGAATGCCCTTGCGAGCCAACCACGAAACCTGTGGGAGCGGGCATACCCGCGAAGAGGCCGGCTCAGCCATAGAGATCAGCAGGCCAGGCCCGTTCGCGG < 1:1590765/130‑1 TACAAGGATGGCGGGATTGGAATGCCCTTGCGAGCCAACCACGAAACCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCGGCTCAGCCATAGAGATCAGCAGGCCAGGCCCGTTCGCGGGCATGCCCGCTCCCAC < 1:329922/134‑1 TACAAGGATGGCGGGATTGGAATGCCCTTGCGAGCCAACCACGAAACCTGTGGGAGCGGACATGCCCGCGAAGAGGCCGGCTCAGCCATAGAGATCAGCAGGCCAGGCCCGTTCGCGGGCATGCCCGCTCCCAC > 2:329922/1‑134 GCCCTTGCGAGCCAACCACGAAACCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCGGCTCAGCCATAGAGATCAGCAGGCCAGGCCCGTTCGCGGGCATGCCCGCTCCC > 1:2157405/1‑109 GCCCTTGCGAGCCAACCACGAAACCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCGGCTCAGCCATAGAGATCAGCAGGCCAGGCCCGTTCGCGGGCATGCCCGCTCCC < 2:2157405/109‑1 AACCACGAAACCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCGGCTCAGCCATAGAGATCAGCAGGCCAGGCCCGTTCGCGGGCATGCCC > 1:919397/1‑90 AACCACGAAACCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCGGCTCAGCCATAGAGATCAGCAGGCCAGGCCCGTTCGCGGGCATGCCC < 2:919397/90‑1 taTGTGGGAGCGGGCATGCCCGCGAAGAGGCCGGCTCAGCCATAGAGATCAGCAGGCCAGGCCCGTTCGC < 1:1822289/68‑1 taTGTGGGAGCGGGCATGCCCGCGAAGAGGCCGGCTCAGCCATAGAGATCAGCAGGCCAGGCCCGTTCGC > 2:1822289/3‑70 TGGGAGCGGGCATGCCCGCGAAGAGGCCGGCTCAGCCATAGAGATCAGCAGGCCAGGCCCGTTCGCGGGCATGCCCGCTCCCAC‑‑AGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACA > 1:2376965/1‑150 CCGCGAAGAGGCCGGCTCAGCCATAGAGATCAGCAGGCCAGGCCCGTTCGCGGGCATGCCCGCTCCCACATAGGCTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCTTCCATCCG > 1:723407/1‑150 CCGCGAAGAGGCCGGCTCAGCCATAGAGATCAGCAGGCCAGGCCCGTTCGCGGGCATGCCCGCTCCCAC‑‑AGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCTTCCATCCGGA < 2:2376965/150‑1 CCGCGAAGAGGCCGGCTCAGCCATAGAGATCAGCAGGCCAGGCCCGTTCGCGGGCATGCCCGCTCCCAC‑‑AGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCTTCCATCCGGA > 1:266135/1‑150 CCGCGAAGAGGCCGGCTCAGCCATAGAGATCAGCAGGCCAGGCCCGTTCGCGGGCATGCCCGCTCCCAC‑‑AGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCTTCCATCCGGA > 2:170444/1‑150 CGCGAAGAGGCCGGCTCAGCCATAGAGATCAGCAGGCCAGGCCCGTTCGCGGGCATGCCCGCTCCCAC‑‑AGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCTTCCATCCGGAT > 1:2362000/1‑150 GCGAAGAGGCCGGCTCAGCCATAGAGATCAGCAGGCCAGGCCCGTTCGCGGGCATGCCCGCTCCCAC‑‑AGGTTTCGTGGTT > 1:1284027/1‑80 GCGAAGAGGCCGGCTCAGCCATAGAGATCAGCAGGCCAGGCCCGTTCGCGGGCATGCCCGCTCCCAC‑‑AGGTTTCGTGGTT < 2:1284027/80‑1 AAGAGGCCGGCTCAGCCATAGAGATCAGCAGGCCAGGCCCGTTCGCGGGCATGCCCGCTCCCAC‑‑AGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCTTCCATCCGGATGATG > 1:1584133/1‑150 TCAGCCATAGAGATCAGCAGGCCAGGCCCGTTCGCGGGCATGCCCGCTCCCAC‑‑AGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCTTCCATCCGGATGATGGCATTCTCTCA < 2:2362000/150‑1 TTCGCGGGCATGCCCGCTCCCAC‑‑AGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCTTCCATC < 2:1047736/100‑1 TTCGCGGGCATGCCCGCTCCCAC‑‑AGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCTTCCATC > 1:1047736/1‑100 gaGCGGGCATGCCCGCTCCCAC‑‑AGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCTTCCATCCGGATGATGGCATTCTCTCAGTACCCCCGATTTTCGGGCGCTTGCGTCTCT > 2:1657202/3‑150 CGCGGGCATGCCCGCTCCCAC‑‑AGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCTTCCATCCGGATGATGGCATTCTCTCAGTACCCCCGATTTTCGGGCGCTTGCGTCTCTT < 2:130270/150‑1 GCGTGCATGCCCGCGCCCAC‑‑AGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCTTCCATCCGGATGATGGCATTCTCTCAGTACCCCCGATTTTCGGGCGCTTGCGTCTCTTC < 1:408684/150‑1 GCGGGCATGCCCGCTCCCAC‑‑AGCTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCTTCCATCCGGATGATGGCATTCTCTCAGTACCCCCGATTTTCGGGCGCTTGCGTCTCTTC < 2:111973/150‑1 GGGCATGCCCGCTCCCAC‑‑AGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCTTCCATCCGGATGATGGCATTCTCTCAGTACCCCCGATTTTCGGGCGCTTGCGTCTCTTCTA > 1:1672873/1‑150 GGGCATGCCCGCTCCCAC‑‑AGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCTTCCATCCGGATGATGGCATTCTCTCAGTACCCCCGATTTTCGGGCGCTTGCGTCTCTTCTA < 1:1961635/150‑1 TGCCCGCTCCCAC‑‑AGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCTTCCATCCGGATGATGGCATTCTCTCAGTACCCCCGATTTTCGGGCGCTTGCGTCTCTTCTACTCTT < 2:987141/150‑1 CCCGCTCCCAC‑‑AGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCTTCCATCCGGATGATGGCATTCTCTCAGTACCCCCGATTTTCGGGCGCTTGCGTCTCTTCTACTCTTTT < 1:1657202/150‑1 CCCGCTCCCAC‑‑AGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCTTCCATCCGGATGATGGCATTCTCTCAGTACCCCCGATTTTCGGGCGCTTGCGTCTCTTCTACTCTTTT > 1:1236421/1‑150 CCGCTCCCAC‑‑AGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCTTCCATCCGGATGATGGCATTCTCTCAGTACCCCCGATTTTCGGGCGCTTGCGTCTCTTCTACTCTTTTG > 2:2168958/1‑150 CGCTCCCAC‑‑AGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCTTCCATCCGGATGATGGCATTCTCTCAGTACCCCCGATTTTCGGGCGCTTGCGTCTCTTCTACTCTTTTGC > 2:1805267/1‑150 CCCAC‑‑AGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCTTCCATCCGGATGATGGCATTCTCTCAGTACCCCCGATTTTCGGGCGCTTGCGTCTCTTCTACTCTTTTGCCTAC < 2:1828113/150‑1 CCCAC‑‑AGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCTTCCATCCGGATGATGGCATTCTCTCAGTACCCCCGATTTTCGGGCGCTTGCGTCTCTTCTACTCTTTTGCCTAC < 2:1415014/150‑1 CAC‑‑AGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCTTCCATCCGGATGATGGCATTCTCTCAGTACCCCCGATTTTCGGGCGCTTGCGTCTCTTCTACTCTTTTGCCTACGC > 1:2167924/1‑150 AC‑‑AGGTTTCGTGGTTGGCTCGCCAGGGCATTCCAATCCCGCCAGCCTTGTAGGGCGATCCCTACAACAAATCTTCCATCCGGATGATGGCATTCTCTCAGTACCCCCGATTTTCGGGCGCTTGCGTCTCTTCTACTCTTTTGCCTACGCA > 1:53075/1‑150 AC‑‑AGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCTTCCATCCGGATGATGGCATTCTCTCAGTACCCCCGATTTTCGGGCGCTTGCGTCTCTTCTACTCTTTTGCCTACGCA > 1:651267/1‑150 CATCATCCGGATGGAAGATTTGTTGTAGGGATCGCCCTACAAGGATGGCGGGATTGGAATGCCCTTGCGAGCCAACCACGAAACCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCGGCTCAGCCATAGAGATCAGCAGGCCAGGCCCGTTCGCGGGCATGCCCGCTCCCAC‑‑A‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/499368‑499197‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcgcgggcatgcccgctcccac‑‑aGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCCTACAACAAATCTTCCATCCGGATGATGGCATTCTCTCAGTACCCCCGATTTTCGGGCGCTTGCGTCTCTTCTACTCTTTTGCCTACGCA > NC_002947/499284‑499430 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |