| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 511907 = | 139 (1.570) | 15 (0.190) | 13/216 | NT | 13.2% | intergenic (+44/‑104) | trpC/PP_0423 | indole‑3‑glycerol phosphate synthase/hypothetical protein |
| ? | NC_002947 | 511985 = | 76 (0.980) | intergenic (+122/‑26) | trpC/PP_0423 | indole‑3‑glycerol phosphate synthase/hypothetical protein | |||||
AGTTCCTGCTCGGCGTGCAGGCCTTGTTCGACGCTCAGGGCCAGGGGTTGATCGGTCATTGATCCACCTATGATGTTGATTTCACTGGCCTCTTCGCGGGTAAACCCGCTCCTACGACAGGGCGCGTACCCGTGTAGGAGCGGGCTTGCCCGCGAAGAGGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/512069‑511907‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cccgcgaagaggccaGTGAAATCAACATCATAGGTGGATCAATGACCGATCAACCCCTGGCCCTGAGCGTCGAACAAGGCCTGCACGCCGAGCAGGAACTGCTGGCCGCCGTCTGCCGTGGC‑GAACGCGAAAGTGGCGTGCTGTTCTGGCGCCCCACCGACCAC > NC_002947/511985‑512133 AGTTCCTGCTCGGCGTGCAGGCCTTGTTCGACGCTCAGGGCCAGGGGTTGATCGGTCATTGATCCACCTATGATGTTGATTTCACTGGCCTCTTCGCGGGTAAACCCGCTCCTACGACAGGGCGCGTACCCGTGTAGGAGCGGGCTTGCC > 1:338321/1‑150 GTTCCTGCTCGGCGTGCAGGCCTTGTTCGACGCTCAGGGCCAGGGGTTGATCGGTCATTGATCCACCTATGATGTTGATTTCACTGGCCTCTTCGCGGGTAAACCCGCTCCTACGACAGGGCGCGTACCCGTGTAGGAGCGGGCTTGCCC > 2:2174652/1‑150 TCCTGCTCGGCGTGCAGGCCTTGTTCGACGCTCAGGGCCAGGGGTTGATCGGTCATTGATCCACCTATGATGTTGATTTCACTGGCCTCTTCGCGGGTAAACCCGCTCCTACGACAGGGCGCGTACCCGTGTAGGAGCGGGCTTGCCCGC < 2:1828599/150‑1 GCTCGGCGTGCAGGCCTTGTTCGACGCTCAGGGCCAGGGGTTGATCGGTCATTGATCCACCTATGATGTTGATTTCACTGGCCTCTTCGCGGGTAAACCCGCTCCTACGACAGGGCGCGTACCCGTGTAGGAGCGGGCTTGCCCGCGAAG < 1:734632/150‑1 TCGGCGTGCAGGCCTTGTTCGACGCTCAGGGCCAGGGGTTGATCGGTCATTGATCCACCTATGATGTTGATTTCACTGGCCTCTTCGCGGGTAAACCCGCTCCTACGACAGGGCGCGTACCCGTGTAGGAGCGGGCTTGCCCGCGAAGAG > 2:2123408/1‑150 CGGCGTGCAGGCCTTGTTCGACGCTCAGGGCCAGGGGTTGATCGGTCATTGATCCACCTATGATGTTGATTTCACTGGCCTCTTCGCGGGTAAACCCGCTCCTACGACAGGGCGCGTACCCGTGTAGGAGCGGGCAAGCCCGCtcctaca < 1:331476/150‑8 GGCGTGCAGGCCTTGTTCGACGCTCAGGGCCAGGGGTTGATCGGTCATTGATCCACCTATGATGTTGATTTCACTGGCCTCTTCGCGGGTAAACCCGCTCCTACGACAGGGCGCGTACCCGTGTAGGAGCGGGCTTGCCCGCGAAGAGGC < 1:183890/150‑1 GCGTGCAGGCCTTGTTCGACGCTCAGGGCCAGGGGTTGATCGGTCATTGATCCACCTATGATGTTGATTTCACTGGCCTCTTCGCGGGTAAACCCGCTCCTACGACAGGGCGCGTACCCGTGTAGGAGCGGGCTTGCCCGCGAAGAGGCC > 2:1935973/1‑150 GTTGATCGGTCATTGATCCACCTATGATGTTGATTTCACTGGCCTCTTCGCGGGTAAACCCGCTCCTACGACAGGGCGCGTACCCGTGTAGGAGCGGGCTTGCCCGCGAA > 1:1156247/1‑110 GTTGATCGGTCATTGATCCACCTATGATGTTGATTTCACTGGCCTCTTCGCGGGTAAACCCGCTCCTACGACAGGGCGCGTACCCGTGTAGGAGCGGGCTTGCCCGCGAA < 2:1156247/110‑1 ATCCACCTATGATGTTGATTTCACTGGCCTCTTCGCGGGTAAACCCGCTCCTACGACAGGGCGCGTACCCGTGTAGGAGCGGGCTTGCCCGCGAAGAGGC < 2:2295827/100‑1 ATCCACCTATGATGTTGATTTCACTGGCCTCTTCGCGGGTAAACCCGCTCCTACGACAGGGCGCGTACCCGTGTAGGAGCGGGCTTGCCCGCGAAGAGGC > 1:2295827/1‑100 TGATGTTGATTTCACTGGCCTCTTCGCGGGTAAACCCGCTCCTACGACAGGGCGCGTACCCGTGTAGGAGCGGGCTTGCCCGCGAAGA < 2:2086074/88‑1 TGATGTTGATTTCACTGGCCTCTTCGCGGGTAAACCCGCTCCTACGACAGGGCGCGTACCCGTGTAGGAGCGGGCTTGCCCGCGAAGA > 1:2086074/1‑88 CCTCTTCGCGGGTAAACCCGCTCCTACGACAGGGCGCGTACCCGTGTAGGAGCGGGCTTGCCCGCGAAGA > 1:1336652/1‑70 CCTCTTCGCGGGTAAACCCGCTCCTACGACAGGGCGCGTACCCGTGTAGGAGCGGGCTTGCCCGCGAAGA < 2:1336652/70‑1 CTCTTCGCGGGTAAGCCCGCTCCTACGACAGGGCGCGGACCCGGGTAGGAGCGGCCTTGCCCGCGAAGAAGCCATTGAAATCAACATCATAGGTGGATCAATGACCAATCAACCCCTGGCCCTGAGCGTCGAACAAGGCCTGCACGCCGg > 2:1367467/1‑149 TTCGCGGGTAAACCCGCTCCTACGACAGGGCGCGTACCCGTGTAGGAGCGGGCTTGCCCGCGAAGAGGC < 2:156081/69‑1 TTCGCGGGTAAACCCGCTCCTACGACAGGGCGCGTACCCGTGTAGGAGCGGGCTTGCCCGCGAAGAGGC > 1:156081/1‑69 GGGTAAACCCGCTCCTACGACAGGGCGCGTACCCGTGTAGGAGCGGGCTTGCCCGCGAAGAGGCCAGTGAAATCAACATCATAGGTGGATCAATGACCGATCAACCCCTGGCCCTGAGCGTCGAACAAGGCCTGCACGCCGAGCAGGAAC > 1:315062/1‑150 GGTAAACCCGCTCCTACGACAGGGCGCGTACCCGTGTAGGAGCGGGCTTGCCCGCGAAGAGGCCAGTGAAATCAACATCATAGGTGGATCAATGACCGATCAACCCCTGGCCCTGAGCGTCGAACAAGGCCTGCACGCCGAGCAGGAACT > 2:1613151/1‑150 GTAAACCCGCTCCTACGACAGGGCGCGTACCCGTGTAGGAGCGGGCTTGCCCGCGAAGAGGCCAGTGAAATCAACATCATAGGTGGATCAATGACCGATCAACCCCTGGCCCTGAGCGTCGAACAAGGCCTGCACGCCGAGCAGGAACTG > 2:2136815/1‑150 acCCCGCTCCTACGACAGGGCGCGTACCCGTGTAGGAGCGGGCTTGCCCGCGAAGAGGCCAGTGAAATCAACATCATAGGTGGATCAATGACCGATCAACCNCNGNCCCTGAGCGTCGAANNAGGCCTGCACGCCGAGCAGGAACTGCTG < 1:1613151/148‑1 CCGCTCCTACGACAGGGCGCGTACCCGTGTAGGAGCGGGCTTGCCCGCGAAGAGGCCAGTGAAATCAACATCATAGGTGGATCAATGACCGATCAACCCCTGGCCCTGAGCGTCGAACAAGGCCTGCACGCCGAGCAGGAACTGCTGGCC > 1:1176694/1‑150 GCTCCTACGACAGGGCGCGTACCCGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTGAAATCAACATCATAGCTGGATCAATGACCGATCAACCCCTGGCCCTGAGCGTCGAACAAGGCCTGCACGCCGAGCAGGAACTGCTGGCCGC > 2:1664463/1‑150 GCTCCTACGACAGGGCGCGTACCCGTGTAGGAGCGGGCTTGCCCGCGAAGAGGCCAGTGAAATCAACATCATAGGTGGATCAATGACCGATCAACCCCTGGCCCTGAGCGTCGAACAAGGCCTGCACGCCGAGCAGGAACTGCTGGCCGC > 2:1329762/1‑150 GCTCCTACGACAGGGCGCGTACCCGTGTAGGAGCGGGCTTGCCCGCGAAGAGGCCAGTGAAATCAACATCATAGGTGGATCAATGACCGATCAACCCCTGG < 2:580480/101‑1 GCTCCTACGACAGGGCGCGTACCCGTGTAGGAGCGGGCTTGCCCGCGAAGAGGCCAGTGAAATCAACATCATAGGTGGATCAATGACCGATCAACCCCTGG > 1:580480/1‑101 TCCTACGACAGGGCGCGTACCCGTGTAGGAGCGGGCTTGCCCGCGAAGAGGCCATTGAAATCAACATCATAGGTGGATCAATGACCGATCAACCCCTGGCCCTGAGCGTCGAACAAGGCCTGCACGCCGAGCAGGAACTGCTGGCCGCCG > 1:1793450/1‑150 GACAGGGCGCGTACCCGTGTAGGAGCGGGCTTGCCCGCGAAGAGGCCATTGAAATCAACATCATAGGTGGATCAATGACCGATCAACCCCTGGCCCTGAGCGTCGAACAAGGCCTGCACGCCGAGCAGGAACTGCTGGCCGCCGTCTGCC > 2:1970116/1‑150 GACAGGGCGCGTACCCGTGTAGGAGCGGGCTTACCCGCGAAGAG < 1:2319291/44‑1 GACAGGGCGCGTACCCGTGTAGGAGCGGGCTTACCCGCGAAGAG > 2:2319291/1‑44 GGCGCGTACCCGTGTAGGAGCGGGCTTGCCCGCGAAGAGGCCATTGAAATCAACATCATAGGTGGATCAATGACCGATCAACCCCTGGCCCTGAGCGTCGAACAAGGCCTGCACGCCGAGCAGGAACTGCTGGCCGCCGTCTGCCGTGGC < 1:1970116/150‑1 GCGTACCCGTGTAGGAGCGGGCTTGCCCGCGAAGAGGCCATTGAAATCAACATCATAGGTGGATCAATGACCGATCAACCCCTGGCCCTGAGCGTCGAACAAGGCCTGCACGCCGAGCAGGAACTGCTGGCCGCCGTCTGCCGTGGC‑GAA < 2:1793450/150‑1 CGTGTAGGAGCGGGCTTGCCCGCGAAGAGGCCAGTGAAATCAACATCATAGGTGGATCAATGACCGATCAACCCCTGGCCCTGCGCGTCGAACAAGGCCTGCACGCCGAGCAGGAACTGCTGGCCGCCGTCTGCCGTGGC‑GAACGCGAAA < 1:2136815/150‑1 CCCGCGAAGAGGCCAGTGAAATCAACATCATAGGTGGATCAATGACCGATCAACCCCTGGCCCTGAGCGTCGAACAAGGCCTGCACGCCGAGCAGGAACTGCTGGCCGCCGTCTGCCGTGGC‑GAACGCGAAAGTGGCGTGCTGTTCTGGC < 2:315062/150‑1 CCCGCGAAGAGGCCAGTGAAATCAACATCATAGGTGGATCAATGACCGATCAACCCCTGGCCCTGAGCGTCGAACAAGGCCTGCACGCCGAGCAGGAACTGCTGGCCGCCGTCTGCCGTGGC‑GAACGCGAAAGTGGCGTGCTGTTCTGGC < 1:1611371/150‑1 CCCGCGAAGAGGCCAGTGAAATCAACATCATAGGTGGATCAATGACCGATCAACCCCTGGCCCTGAGCGTCGAACAAGGCCTGCACGCCGAGCAGGAACTGCTGGCCGCCGTCTGCCGTGGC‑GAACGCGAAAGTGGCGTGCTGTTCTGGC < 2:2238089/150‑1 CCCGCGAAGAGGCCAGTGAAATCAACATCATAGGTGGATCAATGACCGATCAACCCCTGGCCCGGAACGTCGAACAAGGCCTGCACGCCGAGCAGGAACTGCTGGCCGCCGTCTGCCGTGGC‑GAACGCGAAAGTGGCGTGCTGTTCTGGC < 1:1010427/150‑1 CCGCGAAGAGGCCAGTGAAATCAACATCATAGGTGGATCAATGACCGATCAACCCCTGGCCCTGAGCGTCGAACAAGGCCTGCACGCCGAGCAGGAACTGCTGGCCGCCGTCTGCCGTGGC‑GAACGCGAAAGTGGCGTGCTGTTCTGGCG > 1:2168310/1‑150 CCGCGAAGAGGCCAGTGAAATCAACATCATAGGTGGATCAATGACCGATCAACCCCTGGCCCTGAGCGTCGAACAAGGCCTGCA > 1:1278612/1‑84 CCGCGAAGAGGCCAGTGAAATCAACATCATAGGTGGATCAATGACCGATCAACCCCTGGCCCTGAGCGTCGAACAAGGCCTGCA < 2:1278612/84‑1 CGCGAAGAGGCCAGTGAAATCAACATCATAGGTGGATCAATGACCGATCAACCCCTGGCCCTGAGCGTCGAACAAGGCCTGCACGCCGAGCAGGAACTGCTGGCCGCCGTCTGCCGTGGC‑GAACGCGAAAGTGGCGTGCTGTTCTGGCGC < 1:2180131/150‑1 GAAGAGGCCAGTGAAATCAACATCATAGGTGGATCAATGACCGATCAACCCCTGGCCCTGAGCGTCGAACAAGGCCTGCACGCCGAGCAGGAACTGCTGGCCGCCGTCTGCCGTGGC‑GAACGCGAAAGTGGCGTGCTGTTCTGGCGCCCC < 1:1994255/150‑1 AAGAGGCCAGTGAAATCAACATCATAGGTGGATCAATGACCGATCAACCCCTGGCCCTGAGCGTCGAACAAGGCCTGCACGCCGAGCAGGAACTGCTGGCCGCCGTCTGCCGTGGC‑GAACGCGAAAGTGGCGTGCTGTTCTGGCGCCCCA < 2:571189/150‑1 GAGGCCAGTGAAATCAACATCATAGGTGGATCAATGACCGATCAACCCCTGGCCCTGAGCGTCGAACAAGGCCTGCACGCCGAGCAGGAACTGCTGGCCGCCGTCTGCCGTGGC‑GAACGCGAAAGTGGCGTGCTGTTCTGGCGCCCCACC < 2:1662109/150‑1 GGCCAGTGAAATCAACATCATAGGTGGATCAATGATCGATCAACCCCTGGCCCTGAGCGTCGAACAAGGCCTGCACGCCGAGCAGGAACTGCTGGCCGCCGTCTGCCGTGGC‑GAACGCGAAAGTGGCGTGCTGTTCTGGCGCCCCACCGA < 2:1293403/150‑1 CAGTGAAATCAACATCATAGGTGGATCAATGACCGATCAACCCCTGGCCCTGAGCGTCGAACAAGGCCTGCACGCCGAGCAGGAACTGCTGGCCGCCGTCTGCCGTGGCAGATCG‑GAAAGTGGCGTGCTGTTCTGGCGCCCCACCGACCA > 1:1933975/1‑150 CAGTGAAATCAACATCATAGGTGGATCAATGACCGATCAACCCCTGGCCCTGAGCGTCGAACAAGGCCTGCACGCCGAGCAGGAACTGCTGGCCGCCGTCTGCCGTGGC‑GAACGCGAAAGTGGCGTGCTGTTCTGGCGCCCCACCGACCA > 2:2282251/1‑150 AGTGAAATCAACATCATAGGTGGATCAATGACCGATCAACCCCTGGCCCTGAGCGTCGAACAAGGCCTGCACGCCGAGCAGGAACTGCTGGCCGCCGTCTGCCGTGGC‑GAACGCGAAAGTGGCGTGCTGTTCTGGCGCCCCACCGACCAC > 1:1286230/1‑150 AGTGAAATCAACATCATAGGTGGATCAATGACCGATCAACCCCTGGCCCTGAGCGTCGAACAAGGCCTGCACGCAGAGCAGGAACTGCTGGCCGCCGTCTGCCGTGGC‑GAACGCGAAAGTGGCGTGCTGTTCTGGCGCCCCACCGACCAC > 1:1886631/1‑150 AGTTCCTGCTCGGCGTGCAGGCCTTGTTCGACGCTCAGGGCCAGGGGTTGATCGGTCATTGATCCACCTATGATGTTGATTTCACTGGCCTCTTCGCGGGTAAACCCGCTCCTACGACAGGGCGCGTACCCGTGTAGGAGCGGGCTTGCCCGCGAAGAGGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/512069‑511907‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cccgcgaagaggccaGTGAAATCAACATCATAGGTGGATCAATGACCGATCAACCCCTGGCCCTGAGCGTCGAACAAGGCCTGCACGCCGAGCAGGAACTGCTGGCCGCCGTCTGCCGTGGC‑GAACGCGAAAGTGGCGTGCTGTTCTGGCGCCCCACCGACCAC > NC_002947/511985‑512133 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |