| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 741872 | NA (NA) | 4 (0.050) | 4/234 | NT | NA | intergenic (+469/‑31) | PP_t12/PP_0635 | tRNA‑Thr/group II intron‑encoding maturase |
| ? | NC_002947 | = 741905 | NA (NA) | coding (3/1422 nt) | PP_0635 | group II intron‑encoding maturase | |||||
TTGCACGGAACGCTGTGACGTAGATCCGACAGGCATAAGCAGGAAGGTCGCGCGAATTACCCTGGGAGATCTGTACGTTTGCCATTGTGCTACCGCGCGTCGAAAGGCGACGGGATGAGCGTGCAGAAGTCAGCCGAAGCCGTAGTAAGTGGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/741718‑741872‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggcggCATAACCTGTTCGGCCCTTGGTGGCGCGGTTAACCGCCACTTACTACGGCTTCGGCTGACTTCTGCACGCTCATCCCGTCGCCTTTCGACGCGCGGTAGCACAATGGCAAACGTACAGATCTCCCAGGGTAATTCGCGCGACCTTCCTG < NC_002947/741905‑741757 TTGCACGGAACGCTGTGACGTAGATCCGACAGGCATAAGCAGGAAGGTCGCGCGAATTACCCTGGGAGATCTGTACGTTTGCCATTGTGCTACCGCGCGTCGAAAGGCGACGGGATGAGCGTGCAGAAGTCAGCCGAAGCCGTAGTAAGT > 1:919599/1‑150TTGCACGGAACGCTGTGACGTAGATCCGACAGGCATAAGCAGGAAGGTCGCGCGAATTACCCTGGGAGATCTGTACGTTTGCCATTGTGCTACCGCGCGTCGAAAGGCGACGGGATGAGCGTGCAGAAGTCAGCCGAAGCCGTAGTAAGT > 1:2290283/1‑150TTGCACGGAACGCTGTGACGTAGATCCGACAGGCATAAGCAGGAAGGTCGCGCGAATTACCCTGGGAGATCTGTACGTTTGCCATGGTGCTACCGCGCGTCGAAAGGCGACGGGATGAGCGTGCAGAAGTCAGCCGAAGCCGTAGTAAGT > 2:2000732/1‑150 TGCACGGAACGCTGTGACGTAGATCCGACAGGCATAAGCAGGAAGGTCGCGCGAATTACCCTGGGAGATCTGTACGTTTGCCATTGTGCTACCGCGCGTCGAAAGGCGACGGGATGAGCGTGCAGAAGTCAGCCGAAGCCGTAGTAAGTG < 1:567642/150‑1 GCACGGAACGCTGTGACGTAGATCCGACAGGCATAAGCAGGAAGGTCGCGCGAATTACCCTGGGAGATCTGTACGTTTGCCATTGTGCTACCGCGCGTCGAAAGGCGACGGGATGAGCGTGCAGAAGTCAGCCGAAGCCGTAGTAAGTGG < 2:2012664/150‑1 CACGGAACGCTGTGACGTAGATCCGACAGGCATAAGCAGGAAGGTCGCGCGTATTACCCTGGGAGATCTGTACGTTTGCCATTGTGCTACCGCGCGTCGAAAGGCGACGGGATGAGCGTGCAGAAGTCAGCCGAAGCCGTAGTAAGTGGC < 2:1353386/150‑1 agGGAACGCTGTGACGTAGAGCCGACAGGCATAAGCAGGAAGGTCGCGCGAATTACCCTGGGAGATCTGTACGTTTGCCATTGTGCTACCGCGCGTCGAAAGGCGACGGGATGAGCGTGCAGAAGTCAGCCGAAGCCGTAGTAAGTGGCG > 2:1843986/3‑150 ACGGCACGCGGTTTCTTATATCCTACAGGCATAAGCAGGAAGGTCGCGCGAATTACCCTGGGAGATCTGTACGTTTGCCATTGTGCTACCGCGCGTCGAAAGGCGACGGGATGAGCGTGCAGAAGTCAGCCGAAGCCGTAGTAAGTGGCG < 1:1244050/150‑1 ACGGAACGCTGTGACGTAGATCCGACAGGCATAAGCAGGAAGGTCGCGCGAATTACCCTGGGAGATCTGTACGTTTGCCATTGTGCTACCGCGCGTCGAAAGGCGACGGGATGAGCGTGCAGAAGTGAGCCGACGACGTAGTAAGTGGCG < 2:1731495/150‑1 ACGGAACGCTGTGACGTAGATCCGACAGGCATAAGCAGGAAGGTCGCGCGAATTACCCTGGGAGATCTGTACGTTTGCCATTGTGCTACCGCGCGTCGAAAGGCGACGGGATGAGCGTGCAGAAGTCAGCCGAAGCCGTAGTAAGTGGCG < 2:2245433/150‑1 ACGGAACGCTGTGACGTAGATCCGACAGGCATAAGCAGGAAGGTCGCGCGAATTACCCTGGGAGATCTGTACGTTTGCCATTGTGCTACCGCGCGTCGAAAGGCGACGGGATGAGCGTGCAGAAGTCAGCCGAAGCCGTAGTAAGTGGCG < 1:366078/150‑1 CGGAACGCTGTGACGTAGATCCGACAGGCATAAGCAGGAAGGTCGCGCGAATTACCCTGGGAGATCTGTACGTTTGCCATTGTGCTACCGCGCGTCGAAAGGCGACGGGATGAGCGTGCAGAAGTCAGCCGAAGCCGTAGTAAGTGGCGG < 1:1247325/150‑1 TAAGCAGGAAGGTCGCGCGAATTACCCTGGGAGATCTGTACGTTTGCCATTGTGCTACCGCGCGTCGAAAGGCGACGGGATGAGCGTGCAGAAGTCAGCCGAAGCCGTAGTAAGTGGCG < 2:832936/119‑1 TAAGCAGGAAGGTCGCGCGAATTACCCTGGGAGATCTGTACGTTTGCCATTGTGCTACCGCGCGTCGAAAGGCGACGGGATGAGCGTGCAGAAGTCAGCCGAAGCCGTAGTAAGTGGCG > 1:832936/1‑119 GGAAGGTCGCGCGAATTACCCTGGGAGATCTGTACGTTTGCCATTGTGCTACCGCGCGTCGAAAGGCGACGGGATGAGCGTGCAGAAGTCAGCCGAAGCCGTAGTAAGTGGCGG < 2:2249090/114‑1 GGAAGGTCGCGCGAATTACCCTGGGAGATCTGTACGTTTGCCATTGTGCTACCGCGCGTCGAAAGGCGACGGGATGAGCGTGCAGAAGTCAGCCGAAGCCGTAGTAAGTGGCGG > 1:2249090/1‑114 GCGCGAATTACCCTGGGAGATCTGTACGTTTGCCATTGTGCTACCGCGCGTCGAAAGGCGACGGGATGAGCGTGCAGAAGTCAGCCGAAGCCGTAGTAAGTGGCGGCATAACCTGTTCGGCCCTTGGTGGCGCGGTTAACCGCCAC > 2:1248135/1‑146 GCGCGAATTACCCTGGGAGATCTGTACGTTTGCCATTGTGCTACCGCGCGTCGAAAGGCGACGGGATGAGCGTGCAGAAGTCAGCCGAAGCCGTAGTAAGTGGCGGCATAACCTGTTCGGCCCTTGGTGGCGCGGTTAACCGCCAC < 1:1248135/146‑1 GCGCGAATTACCCTGGGAGATCTGTACGTTTGCCATTGTGCTACCGCGCGTCGAAAGGCGACGGGATGAGCGTGCAGAAGTCAGCCGAAGCCGTAGTAAGTG < 1:1861151/102‑1 GCGCGAATTACCCTGGGAGATCTGTACGTTTGCCATTGTGCTACCGCGCGTCGAAAGGCGACGGGATGAGCGTGCAGAAGTCAGCCGAAGCCGTAGTAAGTG > 2:1861151/1‑102 GTTTGCCATTGTGCTACCGCGCGTCGAAAGGCGACGGGATGAGCGTGCAGAAGTCAGCCGAAGCCGTAGTAAGTGGCGG < 2:1738480/79‑1 TACCGCGCGTCGAAAGGCGACGGGATGAGCGTGCAGAAGTCAGCCGAAGCCGTAGTAAGTGGCGGCATAACCTGTTCGGCCCTTGGTGGCGCGGTTAACCGCCACTTACTAC > 1:225048/1‑112 TACCGCGCGTCGAAAGGCGACGGGATGAGCGTGCAGAAGTCAGCCGAAGCCGTAGTAAGTGGCGGCATAACCTGTTCGGCCCTTGGTGGCGCGGTTAACCGCCACTTACTAC < 2:225048/112‑1 TGGCGGCATAACCTGTTCGGCCCTTGGTGGCGCGGTTAACCGCCACTTACTACGGCTTCGGCTGACTTCTGCACGCTCATCCCGTCGCCTTTCGACGCGCGGTAGCACAATGGCAAACGTACAGATCTCCCAGGGTAATTCGCGC < 1:1095921/145‑1 TGGCGGCATAACCTGTTCGGCCCTTGGTGGCGCGGTTAACCGCCACTTACTACGGCTTCGGCTGACTTCTGCACGCTCATCCCGTCGCCTTTCGACGCGCGGTAGCACAATGGCAAACGTACAGATCTCCCAGGGTAATTCGCGC > 2:1095921/1‑145 GGCGGCATAACCTGTTCGGCCCTTGGTGGCGCGGTTAACCGCCACTTACTACGGCTTCGGCTGACTTCTGCACGCTCATCCCGTCGCCTTTCGACGCGCGGTAGCACAA > 1:1588368/1‑109 GGCGGCATAACCTGTTCGGCCCTTGGTGGCGCGGTTAACCGCCACTTACTACGGCTTCGGCTGACTTCTGCACGCTCATCCCGTCGCCTTTCGACGCGCGGTAGCACAA < 2:1588368/109‑1 gccGCATAACCTGTTCGGCCCTTGGTGTCGCGGTTAACCGCCACTTACTACGGCTTCGGCTGACTTCTGCACGCTCATCCCGTCGCCTTTCGACGCGCGGTAGCACAATGGCAAACGTACAGATCTCCCAGGGTAATTCGCGCGACCTTC < 2:594580/147‑1 GCGGCATAACCTGTTCGGCCCTTGGTGGCGCGGTTAACCGCCACTTACTACGGCTTCGGCTGACTTCTGCACGCTCGTCCCGTCGCCTTTCGACGCGCGGTAGC > 2:2257555/1‑104 GCGGCATAACCTGTTCGGCCCTTGGTGGCGCGGTTAACCGCCACTTACTACGGCTTCGGCTGACTTCTGCACGCTCGTCCCGTCGCCTTTCGACGCGCGGTAGC < 1:2257555/104‑1 GCGGCATAACCTGTTCGGCCCTTGGTGGCGCGGTTAACCGCCACTTACTACGGCTTCGGCTGACTTCTGCACGCTCATCCCGTCGCCTTTCGACGCGCGGTAGCACAATGGCAAACGTACAGATCTCCCAGGGTAATTCGCGCGACCTTC > 2:1301509/1‑150 GCGGCATAACCTGTTCGGCCCTTGGTGGCGCGGTTAACCGCCACTTACTACGGCTTCGGCTGACTTCTGCACGCTCATCCCGTCGCCTTTCGACGCGCGGTAGCACAATGGCAAACGTACAGATCTCCCAGGG < 2:1951479/133‑1 GCGGCATAACCTGTTCGGCCCTTGGTGGCGCGGTTAACCGCCACTTACTACGGCTTCGGCTGACTTCTGCACGCTCATCCCGTCGCCTTTCGACGCGCGGTAGCACAATGGCAAACGTACAGATCTCCCAGGG > 1:1951479/1‑133 GCGGCATAACCTGTTCGGCCCTTGGTGGCGCGGTTAACCGCCACTTACTACGGCTTCGGCTGACTTCTGCACGCTCATCCCGTCGCCTTTCGACGCGCGGTAGCACAATGG > 2:241863/1‑111 GCGGCATAACCTGTTCGGCCCTTGGTGGCGCGGTTAACCGCCACTTACTACGGCTTCGGCTGACTTCTGCACGCTCATCCCGTCGCCTTTCGACGCGCGGTAGCACAATGG < 1:241863/111‑1 CGGCATAACCTGTTCGGCCCTTGGTGGCGCGGTTAACCGCCACTTACTACGGCTTCGGCTGACTTCTGCACGCTCATCCCGTCGCCTTTCGACGCGCGGTAGCACAATGGCAAACGTACAGATCTCCCAGGGTAATTCGCGCGACCTTCC < 2:884323/150‑1 GCATAACCTGTTCGGCCCTTGGTGGCGCGGTTAACCGCCACTTACTACGGCTTCGGCTGACTTCTGCACGCTCATCCCGTCGCCTTTCGACGCGCGGTAGCACAATGGCAAACGTACAGATCTCCCAGGGTAATTCGCGCGACCTTCCTG > 2:1428303/1‑150 TTGCACGGAACGCTGTGACGTAGATCCGACAGGCATAAGCAGGAAGGTCGCGCGAATTACCCTGGGAGATCTGTACGTTTGCCATTGTGCTACCGCGCGTCGAAAGGCGACGGGATGAGCGTGCAGAAGTCAGCCGAAGCCGTAGTAAGTGGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/741718‑741872‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggcggCATAACCTGTTCGGCCCTTGGTGGCGCGGTTAACCGCCACTTACTACGGCTTCGGCTGACTTCTGCACGCTCATCCCGTCGCCTTTCGACGCGCGGTAGCACAATGGCAAACGTACAGATCTCCCAGGGTAATTCGCGCGACCTTCCTG < NC_002947/741905‑741757 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |