New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 742614	NA (NA)	5 (0.060)	3/236	NT	NA	coding (712/1422 nt)	PP_0635	group II intron‑encoding maturase
	?	NC_002947	= 742645	NA (NA)					coding (743/1422 nt)	PP_0635	group II intron‑encoding maturase

TGGAAATCGATCTGGAGAAGTTCTTCGATCGAGTCAACCACGACATCCTGATGGCCTGTATCGAGCGCCGGGTCAAAGATAAGTGCGTACTCAGGCTTATTCGCCGCTACCTTGAAGCCGGGATCATGTCGGGC‑‑GGT‑GTCGTCAGCCCACGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/742462‑742614 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acggcGAAAGCGGGCCGCCTTGCGGCGTCCCCTCCTGCCGTGGGCTGACGACACCGCCCGACATGATCCCGGCTTCAAGGTAGCGGCGAATAAGCCTGAGTACGCACTTATCTTTGACCCGGCGCTCGATACAGGCCATCAGGATGTCGTGGTT  <  NC_002947/742645‑742497                                                                                                                                                                                                                                                                                                                   TGGAAATCGATCTGGAGAAGTTCTTCGATCGAGTCAACCACGACATCCTGATGGCCTGTATCGAGCGCCGGGTCAAAGATAAGTGCGTACTCAGGCTTATTCGCCGCTACCTTGAAGCCGGGATCATGTCGGGC‑‑GGT‑GTCGTCAGCCCAC                                                                                                                                                          >  1:1717565/1‑150                              CGAGTCAACCACGACATCCTGATGGCCTGTATCGAGCGCCGGGTCAAAGATAAGTGCGTACTCAGGCTTATTCGCCGCTACCTTGAAGCCGGGATCATGTCGGGC‑‑GGT‑GTCGTCAGCCCACGGCAGGAG‑GGGCCGCCTTGCGGCGTCCCC                                                                                                                            <  1:107383/150‑1                                   CAACCACGACATCCTGATGGCCTGTATCGAGCGCCGGGTCAAAGATAAGTGCGTACTCAGGCTTATTCGCCGCTACCTTGAAGCCGGGATCATGTCGGGC‑‑GGT‑GTCGTCAGCCCACGGCGAAAGCGGGCCGCCTTGCGGCGTCCCCTCCT                                                                                                                        <  1:2309094/150‑1                                       CACGACATCCTGATGGCCTGTATCGAGCGCCGGGTCAAAGATAAGTGCGTACTCAGGCTTATTCGCCGCTACCTTGAAGCCGGGATCATGTCGGGC‑‑GGT‑GTCGTCAGCCCACGGCGAAAGCGGGCCGCCTTGCGGCGTCCCCTCCTGCCG                                                                                                                    >  1:1385320/1‑150                                              TCCTGATGGCCCGTATCTAGCGCCGGGTCAAAAATAAGTGCCCTCGCAGGCTTATTCGCCGCTACCTTGAAGCCGGGATCATGTCGGGC‑‑GGT‑GTCGTCAG‑CAACGGCGAAAGCGTGCCGCCTTGCGGCGTCCCCTCCTGCCGTGGGCTGA                                                                                                            <  1:516403/150‑1                                                                                cAAGTGCGTACTCAGGCTTATTCGCCGCTACCTTGAAGCCGAGATCATGTCGAGCATGATATTCGACAG‑CAACGGCGAAAGCGGGCCGCCTTGCGGCGTCCCCTCCTGCCGTGGGCTGACGACACCGCCCGACATGATCCCGGCTTCAAG                                                                             <  1:682149/149‑1                                                                                                                                                        ACGGCGAAAGCGGGCCGCCTTGCGGCGTCCCCTCCTGCCGTGGGCTGACGACACCGCCCGACATGATCCCGGCTTCAAGGTAGCGGCGAATAAGCCTGAGTACGCACTTATCTTTGACCCGGCGCTCGATACAGGCCATCAGGATGTCGT      >  1:393160/1‑150                                                                                                                                                         CGGCGAAAGCGGGCCGCCTTGCGGCGTCCCCTCCTGCCGTGGGCTGACGACACCGCCCGACATGATCCCGGCTTCAAGGTAGCGGCGAATAAGCCTGAGTACGCACTTATCTTTGACCCGGCGCTCGATACAGGCCATCAGGATGTCGTG     >  1:531286/1‑150                                                                                                                                                         CGGCGAAAGCGGGCCGCCTTGCGGCGTCCCCTCCTGCCGTGGGCTGACGACACCGCCCGACATGATCCCGGCTTCAAGGTAGCGGCGAATAAGCCTGAGTACGCACTTATCTTTGACCCGGCGCTCGATACAGGCCATCAGGATGTCGTG     <  2:974724/150‑1                                                                                                                                                          GGCGAAAGCGGGCCGCCTTGCGGCGTCCCCTCCTGCCGTGGGCTGACGACACCGCCCGACATGATCCCGGCTTCAAGGTAGCGGCGAATAAGCCTGAGTACGCACTTATCTTTGACCCGGCGCTCGATACAGGCCATCAGGATGTCGTGG    <  1:554290/150‑1                                                                                                                                                          GGCGAAAGCGGGCCGCCTTGCGGCGTCCCCTCCTGCCGTGGGCTGACGACACCGCCCGACATGATCCCGGCTTCAAGGTAGCGGCGAATAAGCCTGAGTACGCACTTATCTTTGACCCGGCGCTCGATACAGGCCATCAGGATGTCGTGG    <  2:1082036/150‑1                                                                                                                                                          GGCGAAAGCGGGCCGCCTTGCGGCGTCCCCTCCTGCCGTGGGCTGACGACACCGCCCGACATGATCCAGGCTTCAAGGTAGCGGCGAATAAGCCTGAGTACGCACTTATCTTTGACCCGGCGCTCGATACAGGCCATCAGGATGTCGTGG    >  1:175570/1‑150                                                                                                                                                            CGAAAGCGGGCCGCCTTGCGGCGTCCCCTCCTGCCGTGGGCTGACGACACCGCCCGACATGATCCCGGCTTCAAGGTAGCGGCGAATAAGCCTGAGTACGCACTTATCTTTGACCCGGCGCTCGATACAGGCCATCAGGATGTCGTGGTT  <  2:2255965/150‑1                                                                                                                                                            CGAAAGCGGGCCGCCTTGCGGCGTCCCCTCCTGCCGTGGGCTGACGACACCGCCCGACATGATCCCGGCTTCAAGGTAGCGGCGAATAAGCCTGAGTACGCACTTATCTTTGACCCGGCGCTCGATACAGGCCATCAGGATGTCGTGGTT  <  2:482258/150‑1                                                                                                                                                            CGAAAGCGGGCCGCCTTGCGGCGTCCCCTCCTGCCGTGGGCTGACGACACCGCCCGACATGATCCCGGCTTCAAGGTAGCGGCGAATAAGCCTGAGTACGC                                                   >  1:1203257/1‑101                                                                                                                                                            CGAAAGCGGGCCGCCTTGCGGCGTCCCCTCCTGCCGTGGGCTGACGACACCGCCCGACATGATCCCGGCTTCAAGGTAGCGGCGAATAAGCCTGAGTACGC                                                   <  2:1203257/101‑1                                                                                                                                                                                                                                                                                                                   TGGAAATCGATCTGGAGAAGTTCTTCGATCGAGTCAACCACGACATCCTGATGGCCTGTATCGAGCGCCGGGTCAAAGATAAGTGCGTACTCAGGCTTATTCGCCGCTACCTTGAAGCCGGGATCATGTCGGGC‑‑GGT‑GTCGTCAGCCCACGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/742462‑742614 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acggcGAAAGCGGGCCGCCTTGCGGCGTCCCCTCCTGCCGTGGGCTGACGACACCGCCCGACATGATCCCGGCTTCAAGGTAGCGGCGAATAAGCCTGAGTACGCACTTATCTTTGACCCGGCGCTCGATACAGGCCATCAGGATGTCGTGGTT  <  NC_002947/742645‑742497

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.