| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 796828 = | 118 (1.330) | 6 (0.080) | 6/214 | NT | 6.3% | intergenic (+27/‑163) | PP_0681/PP_0682 | hypothetical protein/inner membrane protein |
| ? | NC_002947 | 796898 = | 75 (0.970) | intergenic (+97/‑93) | PP_0681/PP_0682 | hypothetical protein/inner membrane protein | |||||
ATGAAGTTCAGGACTCATCAGGTGACTAAAAAAGCGACGGCGAGTATAGCCAGCCACCTGTTACAGCAAAAGCCCGGGGGCTGCTCCGCAGCCTGATCGCGACACAAGGCCACACTCCCACAGCAAGCCGATGCTGTACCTGTGGGAGCGGCCTTGTGTCGCGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/796992‑796828‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccttgtgtcgcgatCAGGCTGCGGAGCAGCCCCCGGGCTTTTGCTGTAACAGGTGGCTGGCTATACTCGCCGTCGCTTTTTTAGTCACCTGATGAGTCCTGAACTTCATGGAACGTATCCTCGAAAACGCGATGTATGCCTCGCGCTGGCTGCTCGCACCGA > NC_002947/796898‑797045 ATGAAGTTCAGGACTCATCAGGTGACTAAAAAAGCGACGGCGAGTATAGCCAGCCACCTGTTACAGCAAAAGCCCGGGGGCTGCTCCGCAGCCTGATCGCGACACAAGGCCACACTCCCACAGCAAGCCGATGCTGTACCTGTGGGAGCG > 1:2184237/1‑150ATGAAGTTCAGGACTCATCAGGTGACTAAAAAAGCGACGGCGAGTATAGCCAGCCACCTGTTACAGCAAAAGCCCGGGGGCTGCTCCGCAGCCTGATCGCGACACAAGGCCACACTCCCACAGCAAGCCGATGCTGTACCTGTGGGAGCG > 1:404933/1‑150 TGAAGTTCAGGACTCATCAGGTGACTAAAAAAGCGACGGCGAGTATAGCCAGCCACCTGTTACAGCAAAAGCCCGGGGGCTGCTCCGCAGCCTGATCGCGACACAAGGCCACACTCCCACAGCAAGCCGATGCTGTACCTGTGGGAGCGG > 1:2047616/1‑150 AAGTGCAGGACTCATCAGGTGATTAAAAAAGCGACGGCGAGTATAGCCAGCCACCTGTTACAGCAAAAGCCCGGGGGCTGCTCCGCAGCCTGATCGCGACACAAGGCCACACTCCCACAGCAAGCCGATGCTGTACCTGTGGGAGCGGCC < 2:257372/150‑1 GTTCAGGACTCATCAGGTGACTAAAAAAGCGACGGCGAGTATAGCCAGCCACCTGTTACAGCAAAAGCCCGGGGGCTGCTCCGCAGCCTGATCGCGACACAAGGCCACACTCCCACAGCAAGCCGATGCTGTACCTGTGGGAGCGGCCTT < 2:1860738/150‑1 AGGACTCATCAGGTGACTAAAAAAGCGACGGCGAGTATAGCCAGCCACCTGTTACAGCAAAAGCCCGGGGGCTGCTCCGCAGCCTGATCGCGACACAAGGCCACACTCCCACAGCAAGCCGATGCTGTACCTGTGGGAGCGGCCTTGTGT > 1:2263068/1‑150 CATCAGGTGACTAAAAAAGCGACGGCGAGTATAGCCAGCCACCTGTTACAGCAAAAGCCCGGGGGCTGCTCCGCAGCCTGATCGCGACACAAGGCCACACTCCCACAGCAAGCCGATGCTGTACCTGTGGGAGCGGCCTTGTGTCGCGAT < 1:1512750/150‑1 GACACAAGGCCACACTCCCACAGCAAGCCGATGCTGTACCTGTGGGAGCGGCCTTGTGTCGCGATCAGGCTGCGGAGCAGCCCCCGGGCTTTT < 2:268874/93‑1 GACACAAGGCCACACTCCCACAGCAAGCCGATGCTGTACCTGTGGGAGCGGCCTTGTGTCGCGATCAGGCTGCGGAGCAGCCCCCGGGCTTTT > 1:268874/1‑93 GCCACACTCCCACAGCAAGCCGATGCTGTACCTGTGGGAGCGGCCTTGTGTCGCGATCAGGCTGCGGAGCAGCCCCCGG > 2:2066264/1‑79 GCCACACTCCCACAGCAAGCCGATGCTGTACCTGTGGGAGCGGCCTTGTGTCGCGATCAGGCTGCGGAGCAGCCCCCGG < 1:2066264/79‑1 TCCCACAGCAAGCCGATGCTGTACCTGTGGGAGCGGCCTTGTGTCGCGA < 1:1897566/49‑1 TCCCACAGCAAGCCGATGCTGTACCTGTGGGAGCGGCCTTGTGTCGCGA > 2:1897566/1‑49 CCACAGCAAGCCGATGCCGTACCTGTGGGAGTGGCCTTGTGTCGCGATCAGGCTGCGGAGCAGCCCCCGGGCTTTTGCTGTAACAGGTGGCTGGCTATACTCGCCGTCGCTTTTTTAGTCACCTGATGAGTCCTGAACTTCAT > 2:649082/1‑143 CCACAGCAAGCCGATGCCGTACCTGTGGGAGTGGCCTTGTGTCGCGATCAGGCTGCGGAGCAGCCCCCGGGCTTTTGCTGTAACAGGTGGCTGGCTATACTCGCCGTCGCTTTTTTAGTCACCTGATGAGTCCTGAACTTCAT < 1:649082/143‑1 GCCTTGTGTCGCGATCAGGCTGCGGAGCAGCCCCCGGGCTTTTGCTGTAACAGGTGGCTGGCTATACTCGCCGTCGCTTTTTTAGTCACCTGATGAGTCCTGAACTTCATGGAACGTATCCTCGAAAACGCGATGTATGCCTCGCGCTGG < 2:1605631/150‑1 TCGCGATCAGGCTGCGGAGCAGCCCCCGGGCTTTTGCTGTAACAGGTGGCTGGCTATACTCGCCGTCGCTTTTTTAGTCACCTGATGAGTCCTGAACTTCATGGAACGTATCCTCGAAAACGCGATGTATGCCTCGCGCTGGCTGCTCGC > 2:1763287/1‑150 TCGCGATCAGGCTGCGGAGCAGCCCCCGGGCTTTTGCTGTAACAGGTGGCTGGCTATACTCGCCGTCGCTTTTTTAGTCACCTGATGAGTCCTGAACTTCATGGAACGTATCCTCGAAAACGCGATGTATGCCTCGCGCTGGCTGCTCGC > 1:1072325/1‑150 CGCGATCAGGCTGCGGAGCAGCCCCCGGGCTTTTGCTGTAACAGGTGGCTGGCTATACTCGCCGTCGCTTTTTTAGTCACCTGATGAGTCCTGAACTTCATGGAACGTATCCTCGAAAACGCGATGTATGCCTCGCGCTGGCTGCTCGCA < 1:1460843/150‑1 GCGATCAGGCTGCGGAGCAGCCCCCGGGCTTTTGCTGTAACAGGTGGCTGGCTATACTCGCCGTCGCTTTTTTAGTCACCTGATGAGTCCTGAACTTCATGGAACGTATCCTCGAAAACGCGATGTATGCCTCGCGCTGGCTGCTCGCAC > 1:1015497/1‑150 ATCAGGCTGCGGAGCAGCCCCCGGGCTTTTGCTGTAACAGGTGGCTGGCTATACTCGCCGTCGCTTTTTTAGTCACCTGATGAGTCCTGAACTTCATGGAACGTATCCTCGAAAACGCGATGTATGCCTCGCGCTGGCTGCTCGCACCGA > 1:1765892/1‑150 ATGAAGTTCAGGACTCATCAGGTGACTAAAAAAGCGACGGCGAGTATAGCCAGCCACCTGTTACAGCAAAAGCCCGGGGGCTGCTCCGCAGCCTGATCGCGACACAAGGCCACACTCCCACAGCAAGCCGATGCTGTACCTGTGGGAGCGGCCTTGTGTCGCGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/796992‑796828‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccttgtgtcgcgatCAGGCTGCGGAGCAGCCCCCGGGCTTTTGCTGTAACAGGTGGCTGGCTATACTCGCCGTCGCTTTTTTAGTCACCTGATGAGTCCTGAACTTCATGGAACGTATCCTCGAAAACGCGATGTATGCCTCGCGCTGGCTGCTCGCACCGA > NC_002947/796898‑797045 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |