New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	865531 =	72 (0.810)	4 (0.050)	4/230	NT	6.0%	coding (298/639 nt)	upp	uracil phosphoribosyltransferase
	?	NC_002947	865578 =	58 (0.700)					coding (251/639 nt)	upp	uracil phosphoribosyltransferase

CTCGAAACCTACGAGATCGACGGCTGGTGTGGCAAGGTCTCGGTTGAAAAAATCGCCGGCAAGAAGATCACCGTAGTACCGATCCTGCGCGCCGGCATCGGCATGCTCGACGGCGTGCTCAGCCTGATCCCGGGGGCCAAGGTCAGCGCCGTCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/865684‑865531 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgccgtcgAGCATGCCGATGCCGGCGCGCAGGATCGGTACTACGGTGATCTTCTTGCCGGCGATTTTTTCAACCGAGACCTTGCCACACCAGCCGTCGATCTCGTAGGTTTCGAGGGGCAGGTCCTGGGTGGCTTCATACGTCAGGAGCGCGCC  >  NC_002947/865578‑865723                                                                                                                                                                                                                                                                                                              CTCGAAACCTACGAGATCGACGGCTGGTGTGGCAAGGTCTCGGTTGAAAAAATCGCCGGCAAGAAGATCACCGTAGTACCGATCCTGCGCGCCGGCATCGGCATGCTCGACGGCGTGCTCAGCCTGATCCCGGGGGCCAAGGTCAGCGCC                                                                                                                                                        >  2:1503394/1‑150                                                     TCGCCGGCAAGAAGATCACCGTAGTACCGATCCTGCGCGCCGGCATCGGCATGCTCGACGGCGTGCTCAGCCTGATCCCGGGGGCCAAGGTCAGCGCCGTCG                                                                                                                                                    >  1:1382909/1‑102                                                     TCGCCGGCAAGAAGATCACCGTAGTACCGATCCTGCGCGCCGGCATCGGCATGCTCGACGGCGTGCTCAGCCTGATCCCGGGGGCCAAGGTCAGCGCCGTCG                                                                                                                                                    <  2:1382909/102‑1                                                                                               GCATCGGCATGCTCGACGGCGTGCTCAGCCTGATCCCGGGGGCCAAGGTCAGCGCCGTCGAGCATGCCGATGCCGGCGCGCAGGATCGGTACTACGGTGATCTTCTTGCCGGCGATTTTTTCAACCGAGACCTTGC                                                                        <  1:1747495/136‑1                                                                                               GCATCGGCATGCTCGACGGCGTGCTCAGCCTGATCCCGGGGGCCAAGGTCAGCGCCGTCGAGCATGCCGATGCCGGCGCGCAGGATCGGTACTACGGTGATCTTCTTGCCGGCGATTTTTTCAACCGAGACCTTGC                                                                        >  2:1747495/1‑136                                                                                                               CGGCGTGCTCAGCCTGATCCCGGGGGCCAAGGTCAGCGCCGTCGAGCATGCCGATGCCGGCGCGCAGGATCGGTACTACGGTGATCTTCTTGCCGGCGATTTTTTCAACCGAGACCTTGCCA                                                                      <  1:2254356/122‑1                                                                                                               CGGCGTGCTCAGCCTGATCCCGGGGGCCAAGGTCAGCGCCGTCGAGCATGCCGATGCCGGCGCGCAGGATCGGTACTACGGTGATCTTCTTGCCGGCGATTTTTTCAACCGAGACCTTGCCA                                                                      >  2:2254356/1‑122                                                                                                                                                       GTCGAGCATGCCGATGCCGGCGCGCAGGATCGGTACTACGGTGATCTTCTTGCCGGCGATTTTTTCAACCGAGACCTTGCCACCGCAGCCGTCGATCTCGTAGGTTTCGAGGGGCAGGTCCTGGGTGGCTTCATACGTCAGGAGCGCGCC  <  2:772484/150‑1                                                                                                                                                        TCGAGCATGCCGATGCCGGCGCGCAGGATCGGTACTACGGTGATCTTCTTGCCGGCGATTTTTTCAACCGAGACCTTGCCACACCAGCCGTCGATCTCGTAGGTTTCGAGG                                        <  1:2279954/111‑1                                                                                                                                                        TCGAGCATGCCGATGCCGGCGCGCAGGATCGGTACTACGGTGATCTTCTTGCCGGCGATTTTTTCAACCGAGACCTTGCCACACCAGCCGTCGATCTCGTAGGTTTCGAGG                                        >  2:2279954/1‑111                                                                                                                                                                                                                                                                                                              CTCGAAACCTACGAGATCGACGGCTGGTGTGGCAAGGTCTCGGTTGAAAAAATCGCCGGCAAGAAGATCACCGTAGTACCGATCCTGCGCGCCGGCATCGGCATGCTCGACGGCGTGCTCAGCCTGATCCCGGGGGCCAAGGTCAGCGCCGTCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/865684‑865531 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgccgtcgAGCATGCCGATGCCGGCGCGCAGGATCGGTACTACGGTGATCTTCTTGCCGGCGATTTTTTCAACCGAGACCTTGCCACACCAGCCGTCGATCTCGTAGGTTTCGAGGGGCAGGTCCTGGGTGGCTTCATACGTCAGGAGCGCGCC  >  NC_002947/865578‑865723

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.