New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1266235 =	105 (1.190)	5 (0.060)	5/232	NT	5.0%	coding (1759/2442 nt)	quiP	acyl‑homoserine lactone acylase QuiP
	?	NC_002947	1266275 =	91 (1.090)					coding (1719/2442 nt)	quiP	acyl‑homoserine lactone acylase QuiP

CCTGATGGCCCTGCAGAACGACCAGGTGACCTTGCTGGCCAACAAGCTCAAGCAGATGTTCGACGCACCCGGCATGGCCCAGCCACTGAAGCAGGCAATCGACGCCCTCCCCGCCGGGCAGCGCGACAAGGCCCGCGACACGCTGGCCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1266386‑1266235 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcccggcGGGGAGGGCGTCGATTGCCTGCTTCAGTGGCTGGGCCATGCCGGGTGCGTCGAACATCTGCTTGAGCTTGTTGGCCAGCAAGGTCACCTGGTCGTTCTGCAGGGCCATCAGGCTGCGACTGTCGTGGCGACCGTTGCCGGCCAGCTGT  >  NC_002947/1266275‑1266422                                                                                                                                                                                                                                                                                                              CCTGATGGCCCTGCAGAGCGACCAGGTGACCTTGCTGGCCAACAAGCTCAAGCAGATGTTCGACGCACCCGGCATGGCCCAGCCACTGAAGCAGGCAATCGACGCCCTCCCCGCCGGGCAGCGCGACAAGGCCCGCGACACGCTGGCCCG                                                                                                                                                        <  1:1356580/150‑1  ctaATGGCCCTGCAGAACGACCAGGTGACCTTGCTGGCCAACAAGCTCAAGCAGATGTTCGACGCACCCGGCATGGCCCAGCCACTGAAGCAGGCAATCGACGCCCTCCCCGCCGGGCAGCGCGACAAGGCCCGCGACACGCTGGCCCGG                                                                                                                                                       <  1:940974/147‑1  CTGATGGCCCTGCAGAACGACCAGGTGACCTTGCTGGCCAACAAGCTCAAGCAGATGTTCGACGCACCCGGCATGGCCCAGCCACTGAAGCAGGCAATCGACGCCCTCCCCGCCGGGCAGCGCGACAAGGCCCGCGACACGCTGGCCCGG                                                                                                                                                       >  2:1402744/1‑150  CTGATGGCCCTGCAGAACGACCAGGTGACCTTGCTGGCCAACAAGCTCAAGCAGATGTTCGACGCACCCGGCATGGCCCAGCCACTGAAGCAGGCAATCGACGCCCTCCCCGCCGGGCAGCGCGACAAGGCCCGCGACACGCTGGCCCGG                                                                                                                                                       <  1:366135/150‑1   TGATGGCCCTGCAGAACGACCAGGTGACCTTGCTGGCCAACAAGCTCAAGCAGATGTTCGACGCACCCGGCATGGACCAGCCACTGAACCAGTCAATCGACGCCCTCCCCTCCGGGCAGCGCGACAAGGCCCGCGACACGCTGGCCCGGC                                                                                                                                                      <  1:1501368/150‑1                            GACCTTGCTGGCCAACAAGCTCAAGCAGATGTTCGACGCACCCGGCATGGCCCAGCCACTGAAGCAGGCAATCGACGCCCTCCCCGCCGGGCAGCGCGACAAGGCCCGCGACACGCTGGCC                                                                                                                                                          <  2:493202/121‑1                            GACCTTGCTGGCCAACAAGCTCAAGCAGATGTTCGACGCACCCGGCATGGCCCAGCCACTGAAGCAGGCAATCGACGCCCTCCCCGCCGGGCAGCGCGACAAGGCCCGCGACACGCTGGCC                                                                                                                                                          >  1:493202/1‑121                                                                                   CCACTGAAGCAGGCAATCGACGCCCTCCCCGCCGGGCAGCGCGACAAGGCCCGCGACACGCTGGCCCGGC                                                                                                                                                      <  1:47762/70‑1                                                                                   CCACTGAAGCAGGCAATCGACGCCCTCCCCGCCGGGCAGCGCGACAAGGCCCGCGACACGCTGGCCCGGC                                                                                                                                                      >  2:47762/1‑70                                                                                                              CCCGCCGGGCAGCGCGACAAGGCCCGCGACACGCTGGCCCGGCGGGGAGGGCGTCGATTGCCTGCTTCAGTGGCTGGGCCATGCCGGGTGCGTCGAACATCTGCTTGAGCTTGTTGGCCAGCAAGGTCACCTGGTCGTTCTGCAGGGCCA                                           >  1:117403/1‑150                                                                                                               CCGCCGGGCAGCGCGACAAGGCCCGCGACACGCTGGCCCGGCGGGGAGGGCGTCGATTGCCTGCTTCAGTGGCTGGGCCATGCCGGGTGCGTCGAACATCTGCTTGAGCTTGTTGGCCAGCAAGGTCACCTGGTCGTTCTGCAG                                                >  1:747458/1‑144                                                                                                               CCGCCGGGCAGCGCGACAAGGCCCGCGACACGCTGGCCCGGCGGGGAGGGCGTCGATTGCCTGCTTCAGTGGCTGGGCCATGCCGGGTGCGTCGAACATCTGCTTGAGCTTGTTGGCCAGCAAGGTCACCTGGTCGTTCTGCAG                                                <  2:747458/144‑1                                                                                                                   CGGGCAGCGCGACAAGGCCCGCGACACGCTGGCCCGGCGGGGAGGGCGTCGATTGCCTGCTTCAGTGGCTGGGCCATGCCGGGTGCGTCGAACATCTGCTTGAGCTTGTTGGCCAGCAAGGTCACCTGGTCGTTCTGCAGGGCCATCAGG                                      >  1:1844195/1‑150                                                                                                                              ACAAGGCCCGCGACACGCTGGCCCGGCGGGGAGGGCGTCGATTGCCTGCTTCAGTGGCTGGGCCATGCCGGGTGCGTCGAACATCTGCTTGAGCTTGTTGGCCAGCAAGGTCACCTGGTCGTTCTGCAGGGCCATACGGATGCGACTGTC                           <  2:1844195/150‑1                                                                                                                                                    CCGGCGGGGAGGGCGTCGATTGCCTGCTTCAGTGGCTGGGCCATGCCGGGTGCGTCGAACATCTGCTTGAGCTTGTTGGCCAGCAAGGTCACCTGGTCGTTCTGCAGGGCCATCAGGCTGCGACTGTCGTGGCGACCGTTGCCGGCCAGC     >  1:2218316/1‑150                                                                                                                                                     CGGCGGGGAGGGCGTCGATTGCCTGCTTCAGTGGCTGGGCCATGCCGGGTGCGTCGAACATCTGCTTGAGCTTGTTGGCCAGCAAGGTCACCTGGTCGTTCTGCAGGGCCATCAGGCTGCGACTGTCGTGGCGACCGTTGCCGGCCAGCT    <  2:2306269/150‑1                                                                                                                                                     CGGCGGGGAGGGCGTCGATTGCCTGCTTCAGTGGCTGGGCCATGCCGGGTGCGTCGAACATCTGCTTGAGCTTGTTGGCCAGCAAGGTCACCTGGTCGTTCTGCAGGGCCATCAGGCTGCGACTGTCGTGGCGAC                   >  2:835319/1‑135                                                                                                                                                     CGGCGGGGAGGGCGTCGATTGCCTGCTTCAGTGGCTGGGCCATGCCGGGTGCGTCGAACATCTGCTTGAGCTTGTTGGCCAGCAAGGTCACCTGGTCGTTCTGCAGGGCCATCAGGCTGCGACTGTCGTGGCGAC                   <  1:835319/135‑1                                                                                                                                                       GCGGGGAGGGCGTCGATTGCCTGCTTCAGTGGCTGGGCCATGCCGGGTGCGTCGAACATCTGCTTGAGCTTGTTGGCCAGCAAGGTCACCTGGTCGTTCTGCAGGGCCATCAGGCTGCGACTGTCGTGGCGACCGTTGCCGGCCAGCTGT  <  2:42600/150‑1                                                                                                                                                                                                                                                                                                              CCTGATGGCCCTGCAGAACGACCAGGTGACCTTGCTGGCCAACAAGCTCAAGCAGATGTTCGACGCACCCGGCATGGCCCAGCCACTGAAGCAGGCAATCGACGCCCTCCCCGCCGGGCAGCGCGACAAGGCCCGCGACACGCTGGCCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1266386‑1266235 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcccggcGGGGAGGGCGTCGATTGCCTGCTTCAGTGGCTGGGCCATGCCGGGTGCGTCGAACATCTGCTTGAGCTTGTTGGCCAGCAAGGTCACCTGGTCGTTCTGCAGGGCCATCAGGCTGCGACTGTCGTGGCGACCGTTGCCGGCCAGCTGT  >  NC_002947/1266275‑1266422

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.