| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 1400079 | 99 (1.120) | 7 (0.080) | 6/232 | NT | 6.7% | coding (43/807 nt) | ybgF | TolQRA transport system periplasmic protein |
| ? | NC_002947 | = 1400095 | 102 (1.220) | coding (59/807 nt) | ybgF | TolQRA transport system periplasmic protein | |||||
CCCCTGCTCAGCTGGAACTGGTTTCCTACGGCGAAGAGCGTCCAGTTGCTACCGGCAACGACGAGCAGTCCTGGGCTCAGAACCGTCGCGTAGAACTGCGTAAGTAAGTTCTTATGCGTATGTGCCGCCGTGTAGTAACCGTCCTCGCACTCAGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1399924‑1400079‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctcagccCAGGCCGCAAGCGGCAGGCTGAGTGCGAGGACGGTTACTACACGGCGGCACATACGCATAAGAACTTACTTACGCAGTTCTACGCGACGGTTCTGAGCCCAGGACTGCTCGTCGTTGCCGGTAGCAACTGGACGCTCTTCGCCGTAG < NC_002947/1400095‑1399949 CCCCTGCTCAGCTGGAACTGGTTTCCTACGGCGAAGAGCGTCCAGTTGCTACCGGCAACGACGAGCAGTCCTGGGCTCAGAACCGTCGCGTAGAACTGCGTAAGTAAGTTCTTATGCGTATGTGCCGCCGTGTAGTAACCGTCCTCGCAC > 2:1682996/1‑150 CCCTGCTCAGCTGGAACTGGTTTCCTACGGCGAAGAGCGTCCAGTTGCTACCGGCAACGACGAGCAGTCCTGGGCTCAGAACCGTCGCGTAGAACTGCGTAAGTAAGTTCTTATGCGTATGTGCCGCCGTGTAGTAACCGTCCTCGCACT > 2:1178503/1‑150 CCCTGCTCAGCTGGAACTGGTTTCCTACGGCGAAGAGCGTCCAGTTGCTACCGGCAACGACGAGCAGTCCTGGGCTCAGAACCGTCGCGTAGAACTGCGTAAGTAAGATCCATGGCGTATGTGCCGCCGTGCAGTAACCGTCCTCGCACT > 1:23400/1‑150 CTGCTCAGCTGGAACTGGTTTCCTACGGCGAAGAGCGTCCAGTTGCTACCGGCAACGACGAGCAGTCCTGGGCTCAGAACCGTCGCGTAGAACTGCGTAAGTAAGTTCTTATGCGTATGTGCCGCCGTGTAGTAACCGTCCTCGCACTCA < 2:920768/150‑1 CTGCTCAGCTGGAACTGGTTTCCTACGGCGAAGAGCGTCCAGTTGCTACCGGCAACGACGAGCAGTCCTGGGCTCAGAACCGTCGCGTAGAACTGCGTAAGTAAGTTCTTATGCGTATGTGCCGCCGTGTAGTAACCGTCCTCGCACTCA < 1:1284911/150‑1 TGCTCAGCTGGAACTGGTTTCCTACGGCGAAGAGCGTCCAGTTGCTACCGGCAACGACGAGTAGTCCTGGGCTCAGAACCGTCGCGTAGAACTGCGTAAGTAAGTTCTTATGCGTATGTGCCGCCGTGTAGTAACCGTCCTCGCACTCAG < 2:382134/150‑1 TACGGCGAAGAGCGTCCAGTTGCTACCGGCAACGACGAGCAGTCCTGGGCTCAGAACCGTCGCGTAGAACTGCGTAAGTAAGTTCTTATGCGTATGTGCCGCCGTGTAGTAACCGTCCTCGCACTCAGCCCAGGCCGCAAGCGGCAG < 1:843514/147‑1 TACGGCGAAGAGCGTCCAGTTGCTACCGGCAACGACGAGCAGTCCTGGGCTCAGAACCGTCGCGTAGAACTGCGTAAGTAAGTTCTTATGCGTATGTGCCGCCGTGTAGTAACCGTCCTCGCACTCAGCCCAGGCCGCAAGCGGCAG > 2:843514/1‑147 CGGCGAAGAGCGTCCAGTTGCTACCGGCAACGACGAGCAGTCCTGGGCTCAGAACCGTCGCGTAGAACTGCGTAAGTAAGTTCTTATGCGTATGTGCCGCCGTGTAGTAACCGTCCTCGCACTCAGCCCAGGCCGCAAGCGGCAGGCTGA < 1:2025619/150‑1 TCCTGGGCTCAGAACCGTCGCGTAGAACTGCGTAAGTAAGTTCTTATGCGTATGTGCCGCCGTGTAGTAACCGTCCTCGCACTCAGCCCAGGCCGCAAGCGGCAGGCTGA < 2:868469/110‑1 TCCTGGGCTCAGAACCGTCGCGTAGAACTGCGTAAGTAAGTTCTTATGCGTATGTGCCGCCGTGTAGTAACCGTCCTCGCACTCAGCCCAGGCCGCAAGCGGCAGGCTGA > 1:868469/1‑110 TGCGTAAGTAAGTTCTTATGCGTATGTGCCGCCGTGTAGTAACCGTCCTCGCACTCAGCCCAGGCCGCAAGCGGCAGGCTGAGTGCGA > 1:39971/1‑88 TGCGTAAGTAAGTTCTTATGCGTATGTGCCGCCGTGTAGTAACCGTCCTCGCACTCAGCCCAGGCCGCAAGCGGCAGGCTGAGTGCGA < 2:39971/88‑1 CTCAGCCCAGGCCGCAAGCGGCAGGCTGAGTGCGAGGACGGTTACTACACGGCGGCACATACGCATAAGAACTTACTTACGCAGTTCTACGCGACGGTTCTGAGCCCAGGACTGCTCGTCGTTGCCGGTAGCAACTGGACGCTCTTCGCC > 1:2164960/1‑150 CTCAGCCCAGGCCGCAAGCGGCAGGCTGAGTGCGAGGACGGTTACTACACGGCGGCACATACGCATAAGAACTTACTTACGCAGTTCTACGCGACGGTTCTGAGCCCAGGACTGCTCGTCGTTGCCGGTAGCAACTGGACGCTCTTCGCC > 2:741749/1‑150 CTCAGCCCAGGCCGCAAGCGGCAGGCTGAGTGCGAGGACGGTTACTACACGGCGGCACATACGCATAAGAACTTACTTACGCAGTTCTACGCGACGGTTCTGAGCCCAGGACTGCTCGTCGTTGCCGGTAGCAACTGGACGCTC < 1:830084/144‑1 CTCAGCCCAGGCCGCAAGCGGCAGGCTGAGTGCGAGGACGGTTACTACACGGCGGCACATACGCATAAGAACTTACTTACGCAGTTCTACGCGACGGTTCTGAGCCCAGGACTGCTCGTCGTTGCCGGTAGCAACTGGACGCTC > 2:830084/1‑144 CTCAGCCCAGGCCGCAAGCGGCAGGCTGAGTGCGAGGACGGTTACTACACGGCGGCACATACGCATAAGAACTTACTTACGCAGTTCTACGCGACGGTTC > 1:247147/1‑100 CTCAGCCCAGGCCGCAAGCGGCAGGCTGAGTGCGAGGACGGTTACTACACGGCGGCACATACGCATAAGAACTTACTTACGCAGTTCTACGCGACGGTTC < 2:247147/100‑1 TCAGCCCAGGCCGCAAGCGGCAGGCTGAGTGCGAGGACGGTTACTACACGGCGGCACATACGCATAAGAACTTACTTACGCAGTTCTACGCGACGGTTCTGAGCCCAGGACTGCTCGTCGTTGCCGGTAGCAACTGGACGCTCTTCGCCG > 2:1768858/1‑150 GCCCAGGCCGCAAGCGGCAGGCTGAGTGCGAGGACGGTTACTACACGGCGGCACATACGCATAAGAACTTACTTACGCAGTTCTACGCGACGGTTCTGAGCCCAGGACTGCTCGTCGTTGCCGGTAGCAACTGGACGCTCTTCGCCGTAG < 2:1745687/150‑1 GCCCAGGCCGCAAGCGGCAGGCTGAGTGCGAGGACGGTTACTACACGGCGGCACATACGCATAAGAACTTACTTACGCAGTTCTACGCGACGGTTCTGAGCCCAGGACTGCTCGTCGTTGCCGGTAGCAACTGGACGCTCTTCGCCGTAG < 1:683112/150‑1 CCCAGGCCGCAAGCGGCAGGCTGAGTGCGAGGACGGTTACTACACGGCG > 2:1868334/1‑49 CCCAGGCCGCAAGCGGCAGGCTGAGTGCGAGGACGGTTACTACACGGCG < 1:1868334/49‑1 CCCCTGCTCAGCTGGAACTGGTTTCCTACGGCGAAGAGCGTCCAGTTGCTACCGGCAACGACGAGCAGTCCTGGGCTCAGAACCGTCGCGTAGAACTGCGTAAGTAAGTTCTTATGCGTATGTGCCGCCGTGTAGTAACCGTCCTCGCACTCAGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1399924‑1400079‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctcagccCAGGCCGCAAGCGGCAGGCTGAGTGCGAGGACGGTTACTACACGGCGGCACATACGCATAAGAACTTACTTACGCAGTTCTACGCGACGGTTCTGAGCCCAGGACTGCTCGTCGTTGCCGGTAGCAACTGGACGCTCTTCGCCGTAG < NC_002947/1400095‑1399949 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |