New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1426482	NA (NA)	7 (0.080)	3/238	NT	NA	coding (373/1422 nt)	PP_1250	group II intron‑encoding maturase
	?	NC_002947	= 1426517	NA (NA)					coding (408/1422 nt)	PP_1250	group II intron‑encoding maturase

CAACAAGGGAGCACCGGGTGCCGATGGCATGACGGTCGCTGACTTGGCGGGCTACGTGAGACAGTATTGGCCAACCCTCAAGGTCAGGTTACTGGCCGGTGAATACCAGCCCCAAGCAGTGCGAGCGGTTGAAATTCCCAAGCCGCAGGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1426331‑1426482 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgATCCACGACGCTGGGGATTCCCAGTTGCCGTGTGCCGCCCTGCGGCTTGGGAATTTCAACCGCTCGCACTGCTTGGGGCTGGTATTCACCGGCCAGTAACCTGACCTTGAGGGTTGGCCAATACTGTCTCACGTAGCCCGCCAAGTCA  <  NC_002947/1426517‑1426370                                                                                                                                                                                                                                                                                                              CAACAAGGGAGCACCGGGTGCCGATGGCATGACGGTCGCTGACTTGGCGGGCTACGTGAGACAGTATTGGCCAACCCTCAAGGTCAGGTTACTGGCCGGTGAATACCAGCCCCAAGCAGTGCGAGCGGTTGAAATTCCCAAGCCGCAGGG                                                                                                                                                        >  2:366666/1‑150  AACAAGGGAGCACCGGGTGCCGATGGCATGACTGTCGCTGACTTGGCGGGCTACGTGAGACAGTATTGGCCAACCCTCAAGGTCAGGTTACTGGCCGGTGAATACCAGCCCCAAGCAGTGCGAGCGGTTGGAATTCCCAAGCCGCAGGGC                                                                                                                                                       >  1:1898461/1‑150  AACAAGGGAGCACCGGGTGCCGATGGCATGACGGTCGCTGACTTGGCGGGCTACGTGAGACAGTATTGGCCAACCCTCAAGGTCAGGTTACTGGCCGGTGAATACCAGCCCCAAGCAGTGCGAGCGGTTGACATTCCAAAGACGCACGGC                                                                                                                                                       >  2:1340762/1‑150  AACAAGGGAGCACCGGGTGCCGATGGCATGACGGTCGCTGACTTGGCGGGCTACGTGAGACAGTATTGGCCAACCCTCAAGGTCAGGTTACTGGCCGGTGAATACCAGCCCCAAGCAGTGCGAGCGGTTGAAATTCCCAAGCCGCAGGGC                                                                                                                                                       >  1:1283398/1‑150  AACAAGGGAGCACCGGGTGCCGATGGCATGACGGTCGCTGACTTGGCGGGCTACGTGAGACAGTATTGGCCAACCCTCAAGGTCAGGTTACTGGCCGGTGAATACCAGCCCCAAGCAGTGCGAGCGGTTGAAATTCCCAAGCCGCAGGGC                                                                                                                                                       >  1:592819/1‑150  AACAAGGGAGCACCGGGTGCCGATGGCATGACGGTCGCTGACTTGGCGGGCTACGTGAGACAGTATTGGCCAACCCTCAAGGTCAGGTTACTGGCCGGTGAATACCAGCCCCAAGCAGTGCGAGCGGTTGAAATTCCCAAGCCGCAGGGC                                                                                                                                                       >  1:553375/1‑150  AACAAGGGAGCACCGGGTGCCGATGGCATGACGGTCGCTGACTTGGCGGGCTACGTGAGACAGTATTGGCCAACCCTCAAGGTCAGGTTACTGGCCGGTGAATACCAGCCCCAAGCAGTGCGAGCGGTTGAAATTCCCAAGCCGCAGGGC                                                                                                                                                       <  1:481599/150‑1   ACAAGGGAGCACCGGGTGCCGATGGCATGACGGTCGCTGACTTGGCGGGCTACGTGAGACAGTATTGGCCAACCCTCAAGGTCAGGTTACTGGCCGGTGAATACCAGCCCCAAGCAGTGCGAGCGGTTGAAATTCCCAAGCCGCAGGGCG                                                                                                                                                      >  2:401853/1‑150   ACAAGGGAGCACCGGGTGCCGATGGCATGACGGTCGCTGACTTGGCGGGCTACGTGAGACAGTATTGGCCAACCCTCAAGGTCAGGTTACTGGCCGGTGAATACCAGCCCCAAGCAGTGCGAGCGGTTGAAATTCCCAAGCCGCAGGGCG                                                                                                                                                      <  1:2317799/150‑1                                  GGTCGCTGACTTGGCGGGCTACGTGAGACAGTATTGGCCAACCCTCAAGGTCAGGTTACTGGCCGGTGAATACCAGCCCCAAGCAGTGCGAGCGGTTGAAATTCCCAAGCCGCAGGGCGGCACACGACGCTGGGGATTCCCAGTTGCCGT                                                                                                                       <  1:2271844/150‑1                                                            GACAGTATTGGCCAACCCTCAAGGTCAGGTTACTGGCCGGTGAATACCAGCCCCAAGCAGTGCGAGCGGTTGAAATTCCCAAGCCGCAGGGCGATCCACGACGCTGGGGATTCCCAGTTG                                                                                                                           <  1:954320/120‑1                                                            GACAGTATTGGCCAACCCTCAAGGTCAGGTTACTGGCCGGTGAATACCAGCCCCAAGCAGTGCGAGCGGTTGAAATTCCCAAGCCGCAGGGCGATCCACGACGCTGGGGATTCCCAGTTG                                                                                                                           >  2:954320/1‑120                                                                      GCCAACCCTCAAGGTCAGGTTACTGGCCGGTGAATACCAGCCCCAAGCAGTGCGAGCGGTTGAAATTCCCAAGCCGCAGGG                                                                                                                                                        >  2:1995282/1‑81                                                                      GCCAACCCTCAAGGTCAGGTTACTGGCCGGTGAATACCAGCCCCAAGCAGTGCGAGCGGTTGAAATTCCCAAGCCGCAGGG                                                                                                                                                        <  1:1995282/81‑1                                                                             CTCAAGGTCAGGTTACTGGCCGGTGAATACCAGCCCCAAGCAGTGCGAGCGGTTGAAATTCCCAAGCCGCAGGGCG                                                                                                                                                      >  1:2336782/1‑76                                                                             CTCAAGGTCAGGTTACTGGCCGGTGAATACCAGCCCCAAGCAGTGCGAGCGGTTGAAATTCCCAAGCCGCAGGGCG                                                                                                                                                      <  2:2336782/76‑1                                                                             CTCAAGGCCAGGTTGCTGGCCGGTGAATACCATCCCCAAGTAGTGCGAGCGGTTGAAATTCCCAAGCCGCAGGGCGATCCACGACGCTGGGGATACCCAGTTGCCGTGTGCC                                                                                                                  <  2:274441/112‑1                                                                             CTCAAGGCCAGGTTGCTGGCCGGTGAATACCATCCCCAAGTAGTGCGAGCGGTTGAAATTCCCAAGCCGCAGGGCGATCCACGACGCTGGGGATACCCAGTTGCCGTGTGCC                                                                                                                  >  1:274441/1‑112                                                                                                   GTGAATACCATCCCCAAGCAGTGCGAGCGGTTGAAATACCCAAGCCGCAGGGCGATCCACGACGCTGGGGATACCCAGTTGCCGTGTGCCGCCCTGCGGCTTGGGTATTTC                                                                                             <  1:996321/111‑1                                                                                                   GTGAATACCATCCCCAAGCAGTGCGAGCGGTTGAAATACCCAAGCCGCAGGGCGATCCACGACGCTGGGGATACCCAGTTGCCGTGTGCCGCCCTGCGGCTTGGGTATTTC                                                                                             >  2:996321/1‑111                                                                                                           CAGCCCCAAGCAGTGCGAGCGGTTGAAATTCCCAAGCCGCAGGG                                                                                                                                                        <  2:1768591/44‑1                                                                                                           CAGCCCCAAGCAGTGCGAGCGGTTGAAATTCCCAAGCCGCAGGG                                                                                                                                                        >  1:1768591/1‑44                                                                                                                                                     GGCGATCCACGACGCTGGGGATTCCCAGTTGCCGTGTGCCGCCCTGCGGCTTGGGAATTTCAACCGCTCGCACTGCTTGGGGCTGGTATTCACCGGCCAGTAACCTGACCTTGAGGGTTGGCCAATACTGTCTCACGTAGCCCGCCAAGT    >  2:792348/1‑150                                                                                                                                                     GGCGATCCACGACGCTGGGGATTCCCAGTTGCCGTGTGCCGCCCTGCGGCTTGGGAATTTCAACCGCTCGCACTGCTTGGGGCTGGTATTCACCGGCCAGTAACCTGACCTTGAGGGTTGGCCAATACTGTCTCACGTAGCCCGCCAAGT    >  2:2094931/1‑150                                                                                                                                                     GGCGATCCACGACGCTGGGGATTCCCAGTTGCCGTGTGCCGCCCTGCGGCTTGGGAATTTCAACCGCTCGCACTGCTTGGGGCTGGTATTCACCGGCCAGTAACCTGACCTTGAGGGTTGGCCAATACTGTCTCACGTAGCCCGCAAAGT    >  2:1466300/1‑150                                                                                                                                                     GGCGATCCACGACGCTGGGGATTCCCAGTTGCCGTGTGCCGCCCTGCGGCTTGGGAATTTCAACCGCTCGCACTGCTTGG                                                                          <  2:87763/80‑1                                                                                                                                                     GGCGATCCACGACGCTGGGGATTCCCAGTTGCCGTGTGCCGCCCTGCGGCTTGGGAATTTCAACCGCTCGCACTGCTTGG                                                                          >  1:87763/1‑80                                                                                                                                                      GCGATCCACGACGCTGGGGATTCCCAGTTGCCGTGTGCCGCCCTGCGGCTTGGGAATTTCAACCTCTCGCACTGCTTGGGGCTGGTATTCACCGGCCAGTAACCTGACCTTGAGGGTTGGCCAATACTGTCTCACGTAGCCCGCCAAGTC   >  1:1551295/1‑150                                                                                                                                                      GCGATCCACGACGCTGGGGATTCCCAGTTGCCGTGTGCCGCCCTGCGGCTTGGGAATTTCAACCGCTCGCACTGCTTGGGGCTGGTATTCACCGGCCAGTAACCTGACCTTGAGGGTTGGCCAATACTGTCTCACGTAGCCCGCCAAGTC   >  1:2185712/1‑150                                                                                                                                                      GCGATCCACGACGCTGGGGATTCCCAGTTGCCGTGTGCCGCCCTGCGGCTTGGGAATTTCAACCGCTCGCACTGCTTGGGGCTGGTATTCACCGGCCAGTAACCTGACCTTGAGG                                      >  2:237425/1‑115                                                                                                                                                      GCGATCCACGACGCTGGGGATTCCCAGTTGCCGTGTGCCGCCCTGCGGCTTGGGAATTTCAACCGCTCGCACTGCTTGGGGCTGGTATTCACCGGCCAGTAACCTGACCTTGAGG                                      <  1:237425/115‑1                                                                                                                                                       CGATCCACGACGCTGGGGATTCCCAGTTGCCGTGTGCCGCCCTGCGGCTTGGGAATTTCAACCGCTCGCACTGCTTGGGGCTGGTATTCACCGGCCAGTAACCTGACCTTGAGGGTTGGCCAATACTGTCTCACGTAGCCCGCCAAGTCA  <  1:1238955/150‑1                                                                                                                                                       CGATCCACGACGCTGGGGATTCCCAGTTGCCGTGTGCCGCCCTGCGGCTTGGGAATTTCAACCGCTCGCACTGCTTGGGGCTGGTATTCACCGGCCAGTAACCTGACCTTGAGGGTTGGCCAATACTGTCTCACGTAGCCCGCCAAGTCA  <  1:1241579/150‑1                                                                                                                                                                                                                                                                                                              CAACAAGGGAGCACCGGGTGCCGATGGCATGACGGTCGCTGACTTGGCGGGCTACGTGAGACAGTATTGGCCAACCCTCAAGGTCAGGTTACTGGCCGGTGAATACCAGCCCCAAGCAGTGCGAGCGGTTGAAATTCCCAAGCCGCAGGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1426331‑1426482 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgATCCACGACGCTGGGGATTCCCAGTTGCCGTGTGCCGCCCTGCGGCTTGGGAATTTCAACCGCTCGCACTGCTTGGGGCTGGTATTCACCGGCCAGTAACCTGACCTTGAGGGTTGGCCAATACTGTCTCACGTAGCCCGCCAAGTCA  <  NC_002947/1426517‑1426370

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.