New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1636922	98 (1.110)	9 (0.110)	8/232	NT	8.6%	coding (330/741 nt)	pdxJ	pyridoxine 5'‑phosphate synthase
	?	NC_002947	= 1636929	99 (1.190)					coding (337/741 nt)	pdxJ	pyridoxine 5'‑phosphate synthase

CGTGACGTTGTGCTGCTCAAGGATGTGCTGCAGACCCGCATGAACTTCGAGATGGGCGTCACCGAAGAGATGATGGCCTTTGCCGAAAAGATTCGCCCGGCGCACATCTGCCTGGTACCCGAAACCCGTCAGGAGCTGACCACCGAAGGTGGCCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1636767‑1636922 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggcctgCCACATCCAGGCCACCTTCGGTGGTCAGCTCCTGACGGGTTTCGGGTACCAGGCAGATGTGCGCCGGGCGAATCTTTTCGGCAAAGGCCATCATCTCTTCGGTGACGCCCATCTCGAAGTTCATGCGGGTCTGCAGCACATCCTTGA  <  NC_002947/1636929‑1636783                                                                                                                                                                                                                                                                                                                 CGTGACGTTGTGCTGCTCAAGGATGTGCTGCAGACCCGCATGAACTTCTAGATGGGCGTCACCGAAGAGATGATGGCATTTGCCGCCACGACTAGCCACCCGAACAGCAGCCTGGTACCCGAAACCCGTCAGGAGCTGACCACCGAAGGT                                                                                                                                                           >  2:1727835/1‑150  GTGACGTTGTGCTGCTCAAGGATGTGCTGCAGACCCGCATGAACTTCGAGATGGGCGTCACCGAAGAGATGATGGCCTTTGCCGAAAAGATTCGCCCGGCGCACATCTGCCTGGTACCCGAAACCCGTCAGGAGCTGACCACCGAAGGTG                                                                                                                                                          <  1:133128/150‑1  GTGACGTTGTGCTGCTCAAGGATGTGCTACAGACCCGCATGAACATCGAGAAGGGCGTCACCGAAGAGATGATGGCCTTTGCCGAAAAGATTCGCCCGGCGCACATCTGCCTGGTACCCGAAACCCGTCAGGAGCTGACCACCGAAGGTG                                                                                                                                                          >  2:863931/1‑150      CGTTGTGCTGCGCAAGGATGTGCTGCAGACCCGCATGAACTTCGAGATGGGCGTCACCGAAGAGATGATGGCCTTTGCCGAAAAGATTCGCCCGGCGCACATCTGCCTGGTACCCGAAACCCGTCAGGAGCTGACCACCGAAGGTGGCCT                                                                                                                                                      <  2:374278/150‑1                   AAGGATGTGCTGCAGACCCGCATGAACTTCGAGATGGGCGTCACCGAAGAGATGATGGCCTTTGCCGAAAAGATTCGCCCGGCGCACATCTGCCTGGTACCCGAAACCCGTCAGGAGCTGACCACCGAAGGTGGCCT                                                                                                                                                      <  1:1799731/137‑1                   AAGGATGTGCTGCAGACCCGCATGAACTTCGAGATGGGCGTCACCGAAGAGATGATGGCCTTTGCCGAAAAGATTCGCCCGGCGCACATCTGCCTGGTACCCGAAACCCGTCAGGAGCTGACCACCGAAGGTGGCCT                                                                                                                                                      >  2:1799731/1‑137                    AGGATGTGCTGCAGACCCGCATGAACTTCGAGATGGGCGTCACCGAAGAGATGATGGCCTTTGCCGAAAAGATTCGCCCGGCGCACATCTGCCTGGTACCCGAAACCCGTCAGGAGCTGACCACCGAAGGTGGCCTGCCACATCCAGGCC                                                                                                                                        <  2:1409471/150‑1                     GGATGTGCTGCAGACCCGCATGAACTTCGAGATGGGCGTCACCGAAGAGATGATGGCCTTTGCCGAAAAGATTCGCCCGGCGCACATCTGCCTGGTACCCGAAACCCGTCAGGAGCTGACCACCGAAGGTG                                                                                                                                                          >  1:1350731/1‑131                     GGATGTGCTGCAGACCCGCATGAACTTCGAGATGGGCGTCACCGAAGAGATGATGGCCTTTGCCGAAAAGATTCGCCCGGCGCACATCTGCCTGGTACCCGAAACCCGTCAGGAGCTGACCACCGAAGGTG                                                                                                                                                          <  2:1350731/131‑1                                        ATGAACTTCGAGATGGGCGTCACCGAAGAGATGATGGCCTTTGCCGAAAAGATTCGCCCGGCGCACATCTGCCTGGTACCCGAAACCCGTCAGGAGCTGACCACCGAAGGTGGCCT                                                                                                                                                      >  2:1652253/1‑116                                        ATGAACTTCGAGATGGGCGTCACCGAAGAGATGATGGCCTTTGCCGAAAAGATTCGCCCGGCGCACATCTGCCTGGTACCCGAAACCCGTCAGGAGCTGACCACCGAAGGTGGCCT                                                                                                                                                      <  1:1652253/116‑1                                              TTCGAGATGGGCGTCACCGAAGAGATGATGGCCTTTGCCGAAAAGATTCGCCCGGCGCACATCTGCCTGGTACCCGAAACCCGTCAGGAGCTGACCACCGAAGGTGGCCT                                                                                                                                                      <  1:2254808/110‑1                                              TTCGAGATGGGCGTCACCGAAGAGATGATGGCCTTTGCCGAAAAGATTCGCCCGGCGCACATCTGCCTGGTACCCGAAACCCGTCAGGAGCTGACCACCGAAGGTGGCCT                                                                                                                                                      >  2:2254808/1‑110                                              TTCGAGATGGGCGTCACCGAAGAGATGATGGCCTTTGCCGAAAAGATTCGCCCGGCGCACATCTGCCTGGTACCCGAAACCCGTCAGGAGCTGACCACCGAAGGT                                                                                                                                                           >  2:776592/1‑105                                              TTCGAGATGGGCGTCACCGAAGAGATGATGGCCTTTGCCGAAAAGATTCGCCCGGCGCACATCTGCCTGGTACCCGAAACCCGTCAGGAGCTGACCACCGAAGGT                                                                                                                                                           <  1:776592/105‑1                                                                            GCCTTTGCCGAAAAGATTCGCCCGGCGCACATCTGCCTGGTACCCGAAACCCGTCAGGAGCTGACCACCGAAGGTGGCCTGCCACATCCAGGCCACCTTCGGTGGT                                                                                                                            <  2:1128559/106‑1                                                                            GCCTTTGCCGAAAAGATTCGCCCGGCGCACATCTGCCTGGTACCCGAAACCCGTCAGGAGCTGACCACCGAAGGTGGCCTGCCACATCCAGGCCACCTTCGGTGGT                                                                                                                            >  1:1128559/1‑106                                                                                           ATTCGCCCGGCGCACATCTGCCTGGTACCCGAAACCCGTCAGGAGCTGACCACCGAAGGTGGCCTGCCACATCCAGGCC                                                                                                                                        <  2:838051/79‑1                                                                                           ATTCGCCCGGCGCACATCTGCCTGGTACCCGAAACCCGTCAGGAGCTGACCACCGAAGGTGGCCTGCCACATCCAGGCC                                                                                                                                        >  1:838051/1‑79                                                                                               GCCCGGCGCACATCTGCCTGATACCCGAAACCCGTCAGGAGCTGACCACCGAAGGTGGCCT                                                                                                                                                      >  2:1526753/1‑61                                                                                               GCCCGGCGCACATCTGCCTGATACCCGAAACCCGTCAGGAGCTGACCACCGAAGGTGGCCT                                                                                                                                                      <  1:1526753/61‑1                                                                                                                       CCGAAACCCGTCAGGAGCTGACCACCGAAGGTGGCCTGCCACATCCAGGCCACCT                                                                                                                                    <  2:298230/55‑1                                                                                                                       CCGAAACCCGTCAGGAGCTGACCACCGAAGGTGGCCTGCCACATCCAGGCCACCT                                                                                                                                    >  1:298230/1‑55                                                                                                                                              ACCGAAGGTGGCCTGCCACATCCAGGCCACCTTCGGTGGTCAGCTCCTGACGGGTTTCGGGTACCAGGCAGATGTGCGCTGGGCGAATCTTTTCGGCAAAGGCCATCATCTCTTCGGTGACGCCCATCTCGAA                               <  2:1164030/133‑1                                                                                                                                              ACCGAAGGTGGCCTGCCACATCCAGGCCACCTTCGGTGGTCAGCTCCTGACGGGTTTCGGGTACCAGGCAGATGTGCGCTGGGCGAATCTTTTCGGCAAAGGCCATCATCTCTTCGGTGACGCCCATCTCGAA                               >  1:1164030/1‑133                                                                                                                                                      TGGCCTGCCACATCCAGGCCACCTTCGGTGGTCAGCTCCTGACGGGTTTCG                                                                                                         >  2:1427472/1‑51                                                                                                                                                      TGGCCTGCCACATCCAGGCCACCTTCGGTGGTCAGCTCCTGACGGGTTTCG                                                                                                         <  1:1427472/51‑1                                                                                                                                                         CCTGCCACATCCAGGCCACCTTCGGTGGTCAGCTCCTGACGGGTTTCGGGTACCAGGCAGATGTGCGCCGGGCGAATCTTTTCGGCAAAGGCCATCATCTCTTCGGTGACGCCCATCTC                                  <  2:1385644/119‑1                                                                                                                                                         CCTGCCACATCCAGGCCACCTTCGGTGGTCAGCTCCTGACGGGTTTCGGGTACCAGGCAGATGTGCGCCGGGCGAATCTTTTCGGCAAAGGCCATCATCTCTTCGGTGACGCCCATCTC                                  >  1:1385644/1‑119                                                                                                                                                          CTGCCACATCCAGGCCACCTTCGGTGGTCAGCTCCTGACGGGTTTCGGGTACCAGGCAGATGTGCGCCGGGCGAATCTTTTCGGCAAAGGCCATCATCTCTTCGGTGACGCCCATCTCGAAGTTCATGCGGGTCTGC               >  1:390736/1‑137                                                                                                                                                          CTGCCACATCCAGGCCACCTTCGGTGGTCAGCTCCTGACGGGTTTCGGGTACCAGGCAGATGTGCGCCGGGCGAATCTTTTCGGCAAAGGCCATCATCTCTTCGGTGACGCCCATCTCGAAGTTCATGCGGGTCTGC               <  2:390736/137‑1                                                                                                                                                          CTGCCACATCCAGGCCACCTTCGGTGGTCAGCTCCTGACGGGTTTCGGGTACCAGGCAGATGTGCGCCGGGCGAATCATTTCGGCAAAGGCTATCAACTCTTCGGTGACGCGCATTTCGAAGTTCATGCGGGTCTGCAGCACAGCATTGA  >  2:456136/1‑150                                                                                                                                                          CTGCCACATCCAGGCCACCTTCGGTGGTCAGCTCCTGACGGGTTTCCGGTACCAGGCAGATGTGCGCCGGGCGAATATTGTCGGCAAAGGCCATCATCTCTTCGGTGACGCCCATCTCGAAGTTCATGCGGGTCTGCAGCACATCCTTGA  <  1:542720/150‑1                                                                                                                                                                                                                                                                                                                 CGTGACGTTGTGCTGCTCAAGGATGTGCTGCAGACCCGCATGAACTTCGAGATGGGCGTCACCGAAGAGATGATGGCCTTTGCCGAAAAGATTCGCCCGGCGCACATCTGCCTGGTACCCGAAACCCGTCAGGAGCTGACCACCGAAGGTGGCCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1636767‑1636922 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggcctgCCACATCCAGGCCACCTTCGGTGGTCAGCTCCTGACGGGTTTCGGGTACCAGGCAGATGTGCGCCGGGCGAATCTTTTCGGCAAAGGCCATCATCTCTTCGGTGACGCCCATCTCGAAGTTCATGCGGGTCTGCAGCACATCCTTGA  <  NC_002947/1636929‑1636783

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.