New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1666822	92 (1.040)	9 (0.110)	7/238	NT	9.8%	intergenic (‑52/‑219)	PP_1460/ffh	membrane protein/signal recognition particle GTPase subunit
	?	NC_002947	= 1666885	76 (0.890)					intergenic (‑115/‑156)	PP_1460/ffh	membrane protein/signal recognition particle GTPase subunit

GCCGCTATATATAGGCCGGCTGCGATCAGGTTGGGGATGAGGCTGGGTGAGGAGAACATAAGTCCTGGTTGGCGAGCCTTTAAAGAGACGGAGTTTGGCATAGATTCCGCTGATCAAGGAAGACTGAAGGCTTGTGTCGGGGCATTCGTGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1666670‑1666822 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggcGCGCCCGCTCCCACAGGATCCTCACTACCTGCAGGCCTGCGCCATACCTGTGGGAGCGGGCGTGCCCACGAATGCCCCGACACAAGCCTTCAGTCTTCCTTGATCAGCGGAATCTATGCCAAACTCCGTCTCT  <  NC_002947/1666885‑1666753                                                                                                                                                                                                                                                                                                GCCGCTATATATAGGCCGGCTGCGATCAGGTTGGGGATGAGGCTGGGTGAGGAGAACATAAGTCCTGGTTGGCGAGCCTTTAAAGAGACGGAGTTTGGCATAGATTCCGCTGATCAAGGAAGACTGAAGGCTTGTGTCGGGGCATTCGTG                                                                                                                                          <  1:1147830/150‑1  cctCTATATATAGGCCGGCTGCGATCAGGTTGGGGATGAGGCTGAGTGAGGAGAACATAAGTCCTGGTTGGCGAGCCTTTAAAGAGACGGAGTTTGGCATAGATTCCGCTGATCAAGGAAGACTGAAGGCTTGTGTCGGGGCATTCGTGG                                                                                                                                         <  2:165478/147‑1  CCGCTATATATAGGCCGGCTGCGATCAGGTTGGGGATGAGGCTGGGTGAGGAGAACATAAGTCCTGGTTGGCGAGCCTTTAAAGAGACGGAGTTTGGCATAGATTCCGCTGATCAAGGAAGACTGAAGGCTTGTGTCGGGGCATTCGTGG                                                                                                                                         >  1:1647733/1‑150  CCGCTATATATAGGCCGGCTGCGATCAGGTTGGGGATGAGGCTGGGTGAGGAGAACATAAGTCCTGGTTGGCGAGCCTTTAAAGAGACGGAGTTTGGCATAGATTCCGCTGATCAAGGAAGACTGAAGGCTTGTGTCGGGGCATTCGTGG                                                                                                                                         >  1:860787/1‑150            TAGGCCGGCTGCGATCAGGTTGGGGATGAGGCTGGGTGAGGAGAACATAAGTCCTGGTTGGCGAGCCTTTAAAGAGACGGAGTTTGGCATAGATTCCGCTGATCAAGGAAGACTGAAGGCTTGTGTCGGGGCATTCGTGG                                                                                                                                         >  2:273907/1‑140            TAGGCCGGCTGCGATCAGGTTGGGGATGAGGCTGGGTGAGGAGAACATAAGTCCTGGTTGGCGAGCCTTTAAAGAGACGGAGTTTGGCATAGATTCCGCTGATCAAGGAAGACTGAAGGCTTGTGTCGGGGCATTCGTGG                                                                                                                                         <  1:273907/140‑1                   GCTGCGATCAGGTTGGGGATGAGGCTGGGTGAGGAGAACATAAGTCCTGGTTGGCGAGCCTTTAAAGAGACGGAGTTTGGCATAGATTCCGCTGATCAAGGAAGACTGAAGGCTTGTGTCGGGGCATTCGCGGGCGCGCCCGCTCCCACA                                                                                                                        >  2:990604/1‑150                                                    GAGAACATAAGTCCTGGTTGGCGAGCCTTTAAAGAGACGGAGTTTGGCATAGATTCCGCTGATCAAGGAAGACTGAAGGCTTGTGTCGGGGCATTCGTGG                                                                                                                                         >  1:2241121/1‑100                                                    GAGAACATAAGTCCTGGTTGGCGAGCCTTTAAAGAGACGGAGTTTGGCATAGATTCCGCTGATCAAGGAAGACTGAAGGCTTGTGTCGGGGCATTCGTGG                                                                                                                                         <  2:2241121/100‑1                                                         CATAAGTCCTGGTTGGCGAGCCTTTAAAGAGACGGAGTTTGGCATAGATTCCGCTGATCAAGGAAGACTGAAGGCTTGTGTCGGGGCCTTCGTGGGCACGTCCGCTCCCACAGGATCCTCACTACCTTCAGGCCTGCTCCATACCTGTGG                                                                                  <  2:884914/150‑1                                                                         CGAGCCTTTAAAGAGACGGAGTTTGGCATAGATTCCGCTGATCAAGGAAGACTGAAGGCTTGTGTCGGGGCATTCGCGGGCGCGCCCGCTCCCACAGGATCCTCACTACCTGCAGGCCTGCGCCATACCTGTGGGAGCGGGCGTGCCCAC                                                                  <  1:990604/150‑1                                                                           AGCCTTTAAAGAGACGGAGTTTGGCATAGATTCCGCTGATCAAGGAAGACTGAAGGCTTGTGTCGGGGCATTCGTGGGCGCGCCCGCTCCCACAGGATCCTCACTACCTGCAGGCCTGCGCCATACCTGTGGGAGCGG                                                                            <  1:2210014/138‑1                                                                           AGCCTTTAAAGAGACGGAGTTTGGCATAGATTCCGCTGATCAAGGAAGACTGAAGGCTTGTGTCGGGGCATTCGTGGGCGCGCCCGCTCCCACAGGATCCTCACTACCTGCAGGCCTGCGCCATACCTGTGGGAGCGG                                                                            >  2:2210014/1‑138                                                                                          GGAGTTTGGCATAGATTCCGCTGATCAAGGAAGACTGAAGGCTTGTGTCGGGGCATTCGTGG                                                                                                                                         <  1:338506/62‑1                                                                                          GGAGTTTGGCATAGATTCCGCTGATCAAGGAAGACTGAAGGCTTGTGTCGGGGCATTCGTGG                                                                                                                                         >  2:338506/1‑62                                                                                                                 ATCAAGGAAGACTGAAGGCTTGTGTCGGGGCATTCGTGGGCGCGCCCGCTCCCACAGGATCCTCACTACCTGCAGGCCTGCGCCATACCTGTGGGA                                                                                <  2:1720783/96‑1                                                                                                                 ATCAAGGAAGACTGAAGGCTTGTGTCGGGGCATTCGTGGGCGCGCCCGCTCCCACAGGATCCTCACTACCTGCAGGCCTGCGCCATACCTGTGGGA                                                                                <  2:1721320/96‑1                                                                                                                 ATCAAGGAAGACTGAAGGCTTGTGTCGGGGCATTCGTGGGCGCGCCCGCTCCCACAGGATCCTCACTACCTGCAGGCCTGCGCCATACCTGTGGGA                                                                                >  1:1721320/1‑96                                                                                                                 ATCAAGGAAGACTGAAGGCTTGTGTCGGGGCATTCGTGGGCGCGCCCGCTCCCACAGGATCCTCACTACCTGCAGGCCTGCGCCATACCTGTGGGA                                                                                >  1:1720783/1‑96                                                                                                                                                        GCGCGCCCGCTCCCACAGGATCCTCACTACCTGCAGGCCTGCGCCATACCTGTGGGAGCGGGCGTGCCCACGAATGCCCCGACACAAGCCTTCAGTCTTCCTTGATCAGCGGAATCTATGCCAAACTCCGTCTCT  <  1:2002790/135‑1                                                                                                                                                        GCGCGCCCGCTCCCACAGGATCCTCACTACCTGCAGGCCTGCGCCATACCTGTGGGAGCGGGCGTGCCCACGAATGCCCCGACACAAGCCTTCAGTCTTCCTTGATCAGCGGAATCTATGCCAAACTCCGTCTCT  >  2:2002790/1‑135                                                                                                                                                                                                                                                                                                GCCGCTATATATAGGCCGGCTGCGATCAGGTTGGGGATGAGGCTGGGTGAGGAGAACATAAGTCCTGGTTGGCGAGCCTTTAAAGAGACGGAGTTTGGCATAGATTCCGCTGATCAAGGAAGACTGAAGGCTTGTGTCGGGGCATTCGTGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1666670‑1666822 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggcGCGCCCGCTCCCACAGGATCCTCACTACCTGCAGGCCTGCGCCATACCTGTGGGAGCGGGCGTGCCCACGAATGCCCCGACACAAGCCTTCAGTCTTCCTTGATCAGCGGAATCTATGCCAAACTCCGTCTCT  <  NC_002947/1666885‑1666753

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.