| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 1739822 = | 98 (1.110) | 11 (0.130) | 11/242 | NT | 11.1% | intergenic (‑14/+43) | PP_1534/PP_1535 | hypothetical protein/putative Methyltransferase |
| ? | NC_002947 | 1739848 = | 80 (0.920) | intergenic (‑40/+17) | PP_1534/PP_1535 | hypothetical protein/putative Methyltransferase | |||||
TGTTTGGCCACAAGTCCGGTAAACGCGAAAAGACGCACTGGATCACCTTCATGAAGCGCCCCGCAGCCTAACCCCTCCCCCTACTACTCAAGCCCGCCGACATG‑C‑GCGGGCATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1739935‑1739822‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgAGTAGTAGGGGGAGGGGTTAGGCTGCGGGGCGCTTCATGAAGGTGATCCAGTGCGTCTTTTCGCGTTTACCGGACTTGTGGCCAAACAGGGGTTTCTCATCGGTGAGAGCAAGCAGCTCGCTGACTAGCACCTGAGTT > NC_002947/1739848‑1739985 TGTTTGGCCACAAGTCCGGTAAACGCGAAAAGACGCACTGGATCACCTTCATGAAGCGCCCCGCAGCCTAACCCCTCCCCCTACTACTCATGCCCG‑CG‑CATGTCGGCGGGCTTGAGTAGTAGGGGGAG > 1:623611/1‑128TGTTTGGCCACAAGTCCGGTAAACGCGAAAAGACGCACTGGATCACCTTCATGAAGCGCCCCGCAGCCTAACCCCTCCCCCTACTACTCATGCCCG‑CG‑CATGTCGGCGGGCTTGAGTAGTAGGGGGAG < 2:623611/128‑1 CCCCGCAGCCTAACCCCTCCCCCTACTACTCAAGCCCGCCGACATG‑C‑GCGGGCATG < 1:718228/56‑1 CCCCGCAGCCTAACCCCTCCCCCTACTACTCAAGCCCGCCGACATG‑C‑GCGGGCATG > 2:718228/1‑56 CCCCTACTACTCAAGCCCGCCGACATG‑C‑GCGGGCATGAGTAGTAGGGGGAGGGGTTAGGCTGCGGGGCGCTTCATGAAGGTGATCCAGTGCGTCTTTTCG < 1:1036275/100‑1 CCCCTACTACTCAAGCCCGCCGACATG‑C‑GCGGGCATGAGTAGTAGGGGGAGGGGTTAGGCTGCGGGGCGCTTCATGAAGGTGATCCAGTGCGTCTTTTCG > 2:1036275/1‑100 TCAAGCCCGCCGACATG‑C‑GCGGGCTTGAGTAGTAGGGGGAGGGGTTAGGCTGCGGGGCGCTTCATGAAG > 1:426483/1‑69 TCAAGCCCGCCGACATG‑C‑GCGGGCTTGAGTAGTAGGGGGAGGGGTTAGGCTGCGGGGCGCTTCATGAAG < 2:426483/69‑1 AAGCCCGCCGACATG‑C‑GCGGGCTTGAGTAGTAGGGGGAGGGGTTAGGCTGCGGGGCGCTTCATGAAGGTGATCCAGTGCGTCTTTTCGCGTTTACCGGACTTGTGGCCAAACAGGGGTTTCTCATCGGTGAGA > 1:208502/1‑133 AAGCCCGCCGACATG‑C‑GCGGGCTTGAGTAGTAGGGGGAGGGGTTAGGCTGCGGGGCGCTTCATGAAGGTGATCCAGTGCGTCTTTTCGCGTTTACCGGACTTGTGGCCAAACAGGGGTTTCTCATCGGTGAGA < 2:208502/133‑1 AGCCCGCCGACATG‑C‑GCGGGCTTGAGTAGTAGGGGGAGGGGTTAGGCTGCGGGGCGCTTCATGAAGGTGATCCAGTGCGTCTTTTCGCGTTTACCGGACTTGTGGCCAAACAGGGGTTTCTCATCGGTGAGAGCAAGCAGCTCGCTGACT > 2:1615847/1‑150 GCCCGCCGACATG‑C‑GCGGGCTTGAGTAGTAGGGGGAGGGGTTAGGCTGCGGGGCGCTTCATGAAGGTGATCCAGTGCGTCTTTTCGCGTTTACCGGACTTGTGGC > 1:2031455/1‑105 GCCCGCCGACATG‑C‑GCGGGCTTGAGTAGTAGGGGGAGGGGTTAGGCTGCGGGGCGCTTCATGAAGGTGATCCAGTGCGTCTTTTCGCGTTTACCGGACTTGTGGC < 2:2031455/105‑1 GAGTAGTAGGGGGAGGGGTTAGGCTGCGGGGCGCTTCATGAAGGTGATCCAGTGCGTCTTTTCGCGTTTACCGGACTTGTGGCCAAACAGGGGTTTCTCATCGGTGAGAGCAAGCAGCTCGCTGACTAGCACCTGAGTT < 1:718620/139‑1 GAGTAGTAGGGGGAGGGGTTAGGCTGCGGGGCGCTTCATGAAGGTGATCCAGTGCGTCTTTTCGCGTTTACCGGACTTGTGGCCAAACAGGGGTTTCTCATCGGTGAGAGCAAGCAGCTCGCTGACTAGCACCTGAGTT > 2:718620/1‑139 TGTTTGGCCACAAGTCCGGTAAACGCGAAAAGACGCACTGGATCACCTTCATGAAGCGCCCCGCAGCCTAACCCCTCCCCCTACTACTCAAGCCCGCCGACATG‑C‑GCGGGCATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1739935‑1739822‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgAGTAGTAGGGGGAGGGGTTAGGCTGCGGGGCGCTTCATGAAGGTGATCCAGTGCGTCTTTTCGCGTTTACCGGACTTGTGGCCAAACAGGGGTTTCTCATCGGTGAGAGCAAGCAGCTCGCTGACTAGCACCTGAGTT > NC_002947/1739848‑1739985 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |