New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 175064194 (1.060)7 (0.080) 7/236 NT 7.3% intergenic (+99/‑43) PP_1550/PP_1551 Cro/CI family transcriptional regulator/replication protein O
?NC_002947 = 1750647 87 (1.020)intergenic (+105/‑37) PP_1550/PP_1551 Cro/CI family transcriptional regulator/replication protein O

GAGCGTTTGACCAAGGGCGCGCTGAAGGCAGGGAAAAGGGATGCCGCTGCGTGACCTTGTAGAAATTTTCACCTATCTGGCCTTGCGCCAGTAGTGGGGCCGTCCAGCTGTTCAGGCATCCAGTAGCCAAACAATGGACGAAAAAAAACCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1750489‑1750641
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgccCTGCCA‑GGCGGTTTTTTTTCGTCCATTGTTTGGCTACTGGATGCCTGAACAGCTGGACGGCCCCACTACTGGCGCAAGGCCAGATAGGTGAAAATTTCTACAAGGTCACGCAGCGGCATCCCTTTTCCCTGCCTTCAGCGCGCCCTTG  <  NC_002947/1750647‑1750500
                                                                                                                                                                                                                                                                                                              
GAGCGTTTGATCAAGGGCGCGCTGAAGGCAGGGAAAAGGGATGCCGCTGCGTGACCTTGTAGAAATTTTCACCTATCTGGCCTTGCGCCAGTAGTGGGGCCGTCCAGCTGTTCAGGCATCCAGTAGCCAAACAATGGACGAAAAAAAACC                                                                                                                                                          >  1:1684000/1‑150
 AGCGTTTGACCAAGGGCGCGCTGAAGGCAGGGAAAAGGGATGCCGCTGCGTGACCTTGTAGAAATTTTCACCTATCTGGCCTTGCGCCAGTAGTGGGGCCGTCCAGCTGTTCAGGCATCCAGTAGCCAAACAATGGACGAAAAAAAACCG                                                                                                                                                         >  1:1631246/1‑150
           CAAGGGCGCGCTGAAGGCAGGGAAAAGGGATGCCGCTGCGTGACCTTGTAGAAATTTTCACCTATCTGGCCTTGCGCCAGTAGTGGGGCCGTCCAGACGTGTAGGCATCCAGTAGCCAAACAATGGACGAAAAAAAACCGCCCTGCCA‑GG                                                                                                                                              >  2:1330289/1‑150
                  GCGCTGAAGGCAGGGAAAAGGGATGCCGCTGCGTCGCGTATTAGAAATTTTCACCTATCTGGCCTTGCGCAAGTAGTGGGGCCGTCCAGCTGTTCAGGCATCCAGTAGCCAAACAATGGCCGAAAAAAAACCGCCCTGCCA‑GGCGGTTTT                                                                                                                                       <  1:1330289/150‑1
                                                                                                                               CAAACAATGGACGAAAAAAAACCGCCTGGCAG‑GGCGGTTTTTTTTCGTCCATTGTTTGGCTACTGGATGCCTGAACAGCTGGACGGCCCCACTACTGGCGCAAGGCCAGATAGGTGAAAATTTCT                                                   <  1:92886/125‑1
                                                                                                                               CAAACAATGGACGAAAAAAAACCGCCTGGCAG‑GGCGGTTTTTTTTCGTCCATTGTTTGGCTACTGGATGCCTGAACAGCTGGACGGCCCCACTACTGGCGCAAGGCCAGATAGGTGAAAATTTCT                                                   >  2:92886/1‑125
                                                                                                                                            AAAAAAAACCGCCTGGCAG‑GGCGGCTTTTTTTCGTCCATTGTTTGGCTACTGGATGCCTGAACAGCTGGACGGCCCCACTACTGGCGCAAGGCCAGATAGGTGAAAATTTCTACAAGGTCACGCAGCGGCATCCCTTTTCCCTGCCTTCA             >  1:1284096/1‑150
                                                                                                                                              AAAAAACCGCCTGGCAG‑GGCGGTTTTTTTTCGTCCATTGTTTGGCTACTGGATGCCTGAACAGCTGG                                                                                              <  2:893487/67‑1
                                                                                                                                              AAAAAACCG‑CCTGGCAGGGCGGTTTTTTTTCGTCCATTGTTTGGCTACTGGATGCCTGAACAGCTGG                                                                                              >  1:893487/1‑67
                                                                                                                                                      GCCCTGCCA‑GGCGGTTTTTTTTCGTCCATTGTTTGGCTACTGGATGCCTGAACAGCTGGACGGCCCCACTACTGGCGCAAGGCCAGATAGGTGAAAATTTCTACAAGGTCACGCAGCGGCATCCCTTTTCCCTGCCTTCAGCGCGCCCTT   <  1:80766/150‑1
                                                                                                                                                       CCCTGCCA‑GGCGGTTTTTTTTCGTCCATTGTTTGGCTACTGGATGCCTGAACAGCTGGACGGCCCCACTACTGGCGCAAGGCCAGATAGGTGAAAATTTCTACAAGGTCACGCAGCGGCATCCCTTTTCCCTGCCTTCAGCGCGCCCTTG  >  1:1433466/1‑150
                                                                                                                                                       CCCTGCCA‑GGCGGTTTTTTTTCGTCCATTGTTTGGCTACTGGATGCCTGAACAGCTGGACGGCCCCACTACTGGCGCAAGGCCAGATAGGTGAAAATTTCTACAAGGTCACGCAGCGGCATCCCTTTTCCCTGCCTTCAGCGCGCCCTTG  <  2:473148/150‑1
                                                                                                                                                        CCTGCCA‑GGCGGTTTTTTTTCGTCCATTGTTTGGCTACTGGATGCCTGAACAGCTGGACGGC                                                                                         <  1:1333181/62‑1
                                                                                                                                                        CCTGCCA‑GGCGGTTTTTTTTCGTCCATTGTTTGGCTACTGGATGCCTGAACAGCTGGACGGC                                                                                         >  2:1333181/1‑62
                                                                                                                                                                                                                                                                                                              
GAGCGTTTGACCAAGGGCGCGCTGAAGGCAGGGAAAAGGGATGCCGCTGCGTGACCTTGTAGAAATTTTCACCTATCTGGCCTTGCGCCAGTAGTGGGGCCGTCCAGCTGTTCAGGCATCCAGTAGCCAAACAATGGACGAAAAAAAACCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1750489‑1750641
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgccCTGCCA‑GGCGGTTTTTTTTCGTCCATTGTTTGGCTACTGGATGCCTGAACAGCTGGACGGCCCCACTACTGGCGCAAGGCCAGATAGGTGAAAATTTCTACAAGGTCACGCAGCGGCATCCCTTTTCCCTGCCTTCAGCGCGCCCTTG  <  NC_002947/1750647‑1750500

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.