New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2104141 =	66 (0.750)	4 (0.050)	4/238	NT	5.5%	coding (786/1515 nt)	PP_1879	hypothetical protein
	?	NC_002947	2104172 =	74 (0.860)					coding (755/1515 nt)	PP_1879	hypothetical protein

GCACATCGAAACACTGGGCCCGCTAGGCACCAGCAAACCGCTCGAGCTGACCTTCCCGGGCGCTTTCATTCGCCAGTCCGGCAACGGCACGCGTTACGTGCGTTATGAAGTGCAGGACCGCGCTGGCACACAGCCCCAGCGTGCGCTAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2104291‑2104141 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agcgCGGTCCTGCACTTCATAACGCACGTAACGCGTGCCGTTGCCGGACTGGCGAATGAAAGCGCCCGGGAAGGTCAGCTCGAGCGGTTTGCTGGTGCCTAGCGGGCCCAGTGTTTCGATGTGCTCCTGGGTCAGTGTCATCATGTCGAC  >  NC_002947/2104172‑2104317                                                                                                                                                                                                                                                                                                           GCACATCGAAACACTGGGCCCGCTAGGCACCAGCAAACCGCTCGAGCTGACCTTCCCGGGCGCTTGCATTCGCCAGTCCGGCAACGGCACGCGTTACGTGCGTTATGAAGTGCAGGACCGCGCTGGCACACAGCCCCAGCGTGCGCTAGC                                                                                                                                                     <  1:676518/150‑1                                                                                                           GAAGTGCAGGACCGCGCTGGCACACAGCCCCAGCGTGCGCTAGCGCGGTCCTGCACTTCATAACGCACGTAACGCGTGCCGTTGCCGGACTGGCGAATGAAAGCGCCCGGGAGGGTCAGCTCGAGCGGTTTGCTGGTGCCTAGCGG                                               >  1:1118087/1‑146                                                                                                           GAAGTGCAGGACCGCGCTGGCACACAGCCCCAGCGTGCGCTAGCGCGGTCCTGCACTTCATAACGCACGTAACGCGTGCCGTTGCCGGACTGGCGAATGAAAGCGCCCGGGAGGGTCAGCTCGAGCGGTTTGCTGGTGCCTAGCGG                                               <  2:1118087/146‑1                                                                                                                            TGGCACACAGCCCCAGCGTGCGCTAGCGCGGTCCTGCACTTCATAACGCACGTAACGCGTGCCGTTGCCGGACTGGCGA                                                                                                 <  1:1933778/79‑1                                                                                                                            TGGCACACAGCCCCAGCGTGCGCTAGCGCGGTCCTGCACTTCATAACGCACGTAACGCGTGCCGTTGCCGGACTGGCGA                                                                                                 >  2:1933778/1‑79                                                                                                                                                    AGCGCGGTCCTGCACTTCATAACGCACGTAACGCGTGCCGTTGCCGGACTGGCGAATGAAAGCGCCCGGGAAGGTCAGCTCGAGCGGTTTGCTGGTGCCTAGCGGGCCCAGTGTTTCGATGTGCTCCTGGGTCAGTGTCATCATGTCGAC  <  2:223619/150‑1                                                                                                                                                    AGCGCGGTCCTGCACTTCATAACGCACGTAACGCGTGCCGTTGCCGGACTGGCGAATGAAAGCGCCCGGGAAGGTCAGCTCGAGCGGTTTGCTGGTGCCTAGCGGGCCCAGTGTTTCGA                                 >  1:1108310/1‑119                                                                                                                                                    AGCGCGGTCCTGCACTTCATAACGCACGTAACGCGTGCCGTTGCCGGACTGGCGAATGAAAGCGCCCGGGAAGGTCAGCTCGAGCGGTTTGCTGGTGCCTAGCGGGCCCAGTGTTTCGA                                 <  2:1108310/119‑1                                                                                                                                                                                                                                                                                                           GCACATCGAAACACTGGGCCCGCTAGGCACCAGCAAACCGCTCGAGCTGACCTTCCCGGGCGCTTTCATTCGCCAGTCCGGCAACGGCACGCGTTACGTGCGTTATGAAGTGCAGGACCGCGCTGGCACACAGCCCCAGCGTGCGCTAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2104291‑2104141 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agcgCGGTCCTGCACTTCATAACGCACGTAACGCGTGCCGTTGCCGGACTGGCGAATGAAAGCGCCCGGGAAGGTCAGCTCGAGCGGTTTGCTGGTGCCTAGCGGGCCCAGTGTTTCGATGTGCTCCTGGGTCAGTGTCATCATGTCGAC  >  NC_002947/2104172‑2104317

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.