New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 219253270 (0.790)7 (0.080) 5/236 NT 8.8% intergenic (+98/‑106) PP_1937/PP_1938 helicase/hypothetical protein
?NC_002947 = 2192547 78 (0.920)intergenic (+113/‑91) PP_1937/PP_1938 helicase/hypothetical protein

GGAAGAGCGAATCGTTGCTTGTATTCTTGGGTATGGGCAAAGCGCCGAGGAGTGATGGATCTGTACCCAGGTCCAACCGCTACCTGTCATGTGAATGCCGCCCCCCGGCGTTTTTTGGTGATACGTTTTTAGTGTGTTATGGCAAGCTGCCGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2192380‑2192532
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccgtACGTGCTCAGCCCGAACGGCAGCTTGCCATAACACACTAAAAACGTATCACCAAAAAACGCCGGGGGGCGGCATTCACATGACAGGTAGCGGTTGGACCTGGGTACAGATCCATCACTCCTCGGCGCTTTGCCCATACCCAAGAATAC  <  NC_002947/2192547‑2192400
                                                                                                                                                                                                                                                                                                             
GGAAGAGCGAATCGTTGCTTGTATTCTTGGGTATGGGCAAAGCGCCGAGGAGTGATGGATCTGTACCCAGGTCCAACCGCTACCTGTCATGTGAATGCCGCCCCCCGGCGTTTTTTGGTGATACGTTTTTAGTGTGTTATGGCAAGCTGC                                                                                                                                                         >  1:1627373/1‑150
   AGAGCGAATCGTTGCTTGTATTCTTGGGTATGGGCAAAGCGCCGAGGAGTGAAGGATCTGTACCCAGGTCCAACCGCTACCTGTCATGTGAATGCCGCCCCCCGGCGTTTTTTGGTGATACGTTTTTAGTGTGTTATGGCAAGCTGCCGT                                                                                                                                                      >  2:1254063/1‑150
                    gaATTCTAGGGTATGCGCATAGCGTCGAGGAGTGATGGATCTGTACCCAGGTCCAACCGCTACCTGTCATGTGACTGCCGCCCCCCGGCGTTTTTTGGTGATACGTTTTTAGTGTGTTATGGCAAGCTGCCGTACGTGCTCAGCCCGAAC                                                                                                                                     <  1:1846501/148‑1
                     TATTCTTGGGTATGGGCAAAGCGCCGAGGAGTGATGGATCTGTACCCAGGTCCAACCGCTACCTGTCATGTGAATGCCGCCCCCCGGCGTTTTTTGGTGATACGTTTTTAGTGTGTTATGGCAAGCTGCCGTACGTGCTCAGCCCGAACG                                                                                                                                    <  2:2143162/150‑1
                      ATTCTTGGGTATGGGCAAAGCGCCGAGGAGTGATGGATCTGTACCCAGGTCCAACCGCTACCTGTCATGTGAATGCCGCCCCCCGGCGTTTTTTGGTGATACGTTTTTAGTGTGTTATGGCAAGCTGCCGTACGTGCTCAGCCCGAACGG                                                                                                                                   <  1:1929635/150‑1
                                                                                   CTGTCATGTGAATGCCGCCCCCCGGCGTTTTTTGGTGATACGTTTTTAGTGTGTTATGGCAAGCTGCCGTACGTGCTCAGCCCGAACGG                                                                                                                                   <  1:962362/89‑1
                                                                                   CTGTCATGTGAATGCCGCCCCCCGGCGTTTTTTGGTGATACGTTTTTAGTGTGTTATGGCAAGCTGCCGTACGTGCTCAGCCCGAACGG                                                                                                                                   >  2:962362/1‑89
                                                                                                                        ATACGTTTTTAGTGTGTTATGGCAAGCTGCCGTACGTGCTCAGCCCGAAC                                                                                                                                     >  1:1158479/1‑50
                                                                                                                        ATACGTTTTTAGTGTGTTATGGCAAGCTGCCGTACGTGCTCAGCCCGAAC                                                                                                                                     <  2:1158479/50‑1
                                                                                                                                                     CCGTACGTGCTCAGCCCGAACGGCAGCTTGCCATAACACACTAAAAACGTATCACCAAAAAACGCCGGGGGGCGGCATTCACATGACAGGTAGCGGTTGGACCTGGGTACAGATCCATCACTCCTCGGCGCTTTGCCCATACCCAAGAAT    >  1:444595/1‑150
                                                                                                                                                       GTACGTGCTCAGCCCGAACGGCAGCTTGCCATAACACACTAAAAACGTATCACCAAAAAACGCCGGGGGGCGGCATTCACATGACAGGTAGCGGTTGGACCTGGGTACAGATCCATCACTCCTCGGCGCTTTGCCCATACCCAAGAATAC  >  2:1547430/1‑150
                                                                                                                                                        TACGTGCTCAGCCCGAACGGCAGCTTGCCATAACACACTAAAAACGTATCACCAAAAAACGCCGGGGGGCGGCATTCACATGACAGGTAGCGGTTG                                                       >  1:1389190/1‑96
                                                                                                                                                        TACGTGCTCAGCCCGAACGGCAGCTTGCCATAACACACTAAAAACGTATCACCAAAAAACGCCGGGGGGCGGCATTCACATGACAGGTAGCGGTTG                                                       <  2:1389190/96‑1
                                                                                                                                                        TACGTGCTCAGCCCGAACGGCAGCTTGCCATAACACACTAAAAA                                                                                                           >  1:2405498/1‑44
                                                                                                                                                        TACGTGCTCAGCCCGAACGGCAGCTTGCCATAACACACTAAAAA                                                                                                           <  2:2405498/44‑1
                                                                                                                                                                                                                                                                                                             
GGAAGAGCGAATCGTTGCTTGTATTCTTGGGTATGGGCAAAGCGCCGAGGAGTGATGGATCTGTACCCAGGTCCAACCGCTACCTGTCATGTGAATGCCGCCCCCCGGCGTTTTTTGGTGATACGTTTTTAGTGTGTTATGGCAAGCTGCCGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2192380‑2192532
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccgtACGTGCTCAGCCCGAACGGCAGCTTGCCATAACACACTAAAAACGTATCACCAAAAAACGCCGGGGGGCGGCATTCACATGACAGGTAGCGGTTGGACCTGGGTACAGATCCATCACTCCTCGGCGCTTTGCCCATACCCAAGAATAC  <  NC_002947/2192547‑2192400

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.