New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2289128	122 (1.380)	6 (0.070)	6/236	NT	5.2%	coding (1368/2658 nt)	pepN	aminopeptidase N
	?	NC_002947	= 2289154	101 (1.190)					coding (1394/2658 nt)	pepN	aminopeptidase N

CTTCCGTAAGGGCAGCGACCTGTACTTTGAACGTCATGATGGCCAGGCGGTAACCACCGACGACTTCATCAAGGCCATGGAAGACGCCAACGGCGTCGACTTTACCCAGTTCAAGCGCTGGTACAGCCAGGCGGGCACCCCACGCCTGGAGGTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2288975‑2289128 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aggtcTGCGCGGCGGCGTCATACGCCTCGCTGACCTCCAGGCGTGGGGTGCCCGCCTGGCTGTACCAGCGCTTGAACTGGGTAAAGTCGACGCCGTTGGCGTCTTCCATGGCCTTGATGAAGTCGTCGGTGGTTACCGCCTGGCCATCATGAC  <  NC_002947/2289154‑2289007                                                                                                                                                                                                                                                                                                                CTTCCGTAAGGGCAGCGACCTGTACTTTGAACGTCATGATGGCCAGGCGGTAACCACCGACGACTTCATCAAGGCCATGGAAGACGCCAACGGCGTCGACTTTACCCAGTTCAAGCGCTGGTACAGCCAGGCGGGCACCCCACGCCTGGA                                                                                                                                                          <  1:2382338/150‑1  TTCCGTAAGGGCAGCGACCTGTCATTTGAACGTCATGATGGCCAGGCGGTAACCACCGACGACTTCATCAAGGCCATGGAAGACGCCAACGGCGTCGACTTTACCCAGTTCAAGCGCTGGTACAGCCAGGCGGGCACCCCACGCCTGGAG                                                                                                                                                         >  1:2131849/1‑150  TTCCGTAAGGGCAGCGACCTGTACTTTGAACGTCATGATGGCCAGGCGGTAACCACCGACGACTTCATCAAGGCCATGGAAGACGCCAACGGCGTCGACTTTACCCAGTTCAAGCGCTGGTACAGCCAGGCGGGCACCCCACGCCTGGAG                                                                                                                                                         >  1:13590/1‑150  TTCCGTAAGGGCAGCGACCTGTACTTTGAACGTCATGATGGCCAGGCGGTAACCACCGACGACTTCATCAAGGCCATGGAAGACGCCAACGGCGTCGACTTTACCCAGTTCAAGCGCTGGTACAGCCAGGCGGGCACCCCACGCCTGGAG                                                                                                                                                         >  1:400806/1‑150  TTCCGTAAGGGCAGCGACCTGTACTTTGAACGTCATGATGGCCAGGCGGTAACCACCGACGACTTCATCAAGGCCATGGAAGACGCCAACGGCGTCGACTTTACCCAGTTCAAGCGCTGGTACAGCCAGGCGGGCACCCCACGCCTGGAG                                                                                                                                                         >  1:125608/1‑150                                                   TAACCACCGACGACTTCATCAAGGCCATGGAAGACGCCAACGGCGTCGACTTTACCCAGTTCAAGCGCTGGTACAGCCAGGCGGGCACCCCACGCCTGGA                                                                                                                                                          >  1:2184713/1‑100                                                   TAACCACCGACGACTTCATCAAGGCCATGGAAGACGCCAACGGCGTCGACTTTACCCAGTTCAAGCGCTGGTACAGCCAGGCGGGCACCCCACGCCTGGA                                                                                                                                                          <  2:2184713/100‑1                                                       CACCGACGACTTCATCAAGGCCATGGAAGACGCCAACGGCGTCGACTTTACCCAGTTCAAGCGCTGGTACAGCCAGGCGGGCACCCCACGCCTGGA                                                                                                                                                          <  1:480704/96‑1                                                       CACCGACGACTTCATCAAGGCCATGGAAGACGCCAACGGCGTCGACTTTACCCAGTTCAAGCGCTGGTACAGCCAGGCGGGCACCCCACGCCTGGA                                                                                                                                                          >  2:480704/1‑96                                                        ACCGACGACTTCATCAAGGCCATGGAAGACGCCAACGGCGTCGACTTTACCCAGTTCAAGCGCTGGTACAGCCAGGCGGGCACCCCACGCCTGGAGGTCTGCGCGGCGGCGTCATACGCCTCGCTGA                                                                                                                          <  1:1742964/127‑1                                                        ACCGACGACTTCATCAAGGCCATGGAAGACGCCAACGGCGTCGACTTTACCCAGTTCAAGCGCTGGTACAGCCAGGCGGGCACCCCACGCCTGGAGGTCTGCGCGGCGGCGTCATACGCCTCGCTGA                                                                                                                          >  2:1742964/1‑127                                                                    ATCAAGGCCATGGAAGACGCCAACGGCGTCGACTTTACCCAGTTCAAGCGCTGGTACAGCCAGGCGGGCACCCCACGCCTGGAGGTCTGCGCGGCGGCGTCATACGCCTCGCTGACCTCCAGGCGTGGG                                                                                                            >  1:2122489/1‑129                                                                    ATCAAGGCCATGGAAGACGCCAACGGCGTCGACTTTACCCAGTTCAAGCGCTGGTACAGCCAGGCGGGCACCCCACGCCTGGAGGTCTGCGCGGCGGCGTCATACGCCTCGCTGACCTCCAGGCGTGGG                                                                                                            <  2:2122489/129‑1                                                                                                             GTTCAAGCGCTGGTACAGCCAGGCGGGCACCCCACGCCTGGAGGTCTGCGCGGCGGCGTCATACGCCTCGCTGACCTCCAGG                                                                                                                  >  1:1789376/1‑82                                                                                                             GTTCAAGCGCTGGTACAGCCAGGCGGGCACCCCACGCCTGGAGGTCTGCGCGGCGGCGTCATACGCCTCGCTGACCTCCAGG                                                                                                                  <  2:1789376/82‑1                                                                                                                                                      AGGTCTGCGCGGCGGCGTCATACGCCTCGCTGACCTCCAGGCGTGGGGTGCCCGCCTGGCTGTACCAGCGCTTGAACTGGGTAAAGTCGACGCCGTTGGCGTCTTCCATGGCCTTGATGAAGTC                               <  1:2274217/124‑1                                                                                                                                                      AGGTCTGCGCGGCGGCGTCATACGCCTCGCTGACCTCCAGGCGTGGGGTGCCCGCCTGGCTGTACCAGCGCTTGAACTGGGTAAAGTCGACGCCGTTGGCGTCTTCCATGGCCTTGATGAAGTC                               >  2:2274217/1‑124                                                                                                                                                        GTCTGCGCGGCGGCGTCATACGCCTCGCTGACCTCCAGGCGTGGGGTGCCCGCCTGGCTGTACCAGCGCTTGAACTGGGTAAAGTCGACGCCGTTGGCGTCTTCCATGGCCTTGATGAAGTCGTCGGTGG                       <  1:181959/130‑1                                                                                                                                                        GTCTGCGCGGCGGCGTCATACGCCTCGCTGACCTCCAGGCGTGGGGTGCCCGCCTGGCTGTACCAGCGCTTGAACTGGGTAAAGTCGACGCCGTTGGCGTCTTCCATGGCCTTGATGAAGTCGTCGGTGG                       >  2:181959/1‑130                                                                                                                                                         TCTGCGCGGCGGCGTCATACGCCTCGCTGACCTCCAGGCGTGGGGTGCCCGCCTGGCTGTACCAGCGCTTGAACTGGGTAAAGTCGACGCCGTTGGCGTCTTCCATGGCCTTGATGAAGTCGTCGGTGGTTACCGCCTGGCCATCATGAC  >  1:961298/1‑150                                                                                                                                                                                                                                                                                                                CTTCCGTAAGGGCAGCGACCTGTACTTTGAACGTCATGATGGCCAGGCGGTAACCACCGACGACTTCATCAAGGCCATGGAAGACGCCAACGGCGTCGACTTTACCCAGTTCAAGCGCTGGTACAGCCAGGCGGGCACCCCACGCCTGGAGGTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2288975‑2289128 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aggtcTGCGCGGCGGCGTCATACGCCTCGCTGACCTCCAGGCGTGGGGTGCCCGCCTGGCTGTACCAGCGCTTGAACTGGGTAAAGTCGACGCCGTTGGCGTCTTCCATGGCCTTGATGAAGTCGTCGGTGGTTACCGCCTGGCCATCATGAC  <  NC_002947/2289154‑2289007

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.