| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 2664051 = | 84 (0.950) | 7 (0.100) | 6/198 | NT | 9.2% | intergenic (+33/‑130) | prpC/acnA‑II | methylcitrate synthase/aconitate hydratase |
| ? | NC_002947 | 2664132 = | 70 (0.980) | intergenic (+114/‑49) | prpC/acnA‑II | methylcitrate synthase/aconitate hydratase | |||||
GGTGCCTGGCAGGTGCTTGCGGTATGCAGTGTTCATCATGGAATCAGGCTCGGTCACAGGATTCGGAAGGTTTCACCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGCGTCAGCAGGTGCACAGTGGTTACAAGGCCGGGTGCATTCGCGGGCACGCCCGCTCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2664216‑2664051‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcattcgcgggcacgcccgctcccACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCATGATGAACACTGCATACCGCAAGCACCTGCCAGGCACCGACCTGGACTACTTCGACGCCCGCGCGGCGGTCGAGGCGATCAAGCCCGGCGCCTACGACGGC > NC_002947/2664132‑2664279 gcggctTGGCAGGTGCTTGCGGTATGCAGTGTTCATCATGGAATCAGGCTCGGTCACAGGATTCGGAAGGTTTCACCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGCGTCAGCAGGTGCACAGTGGTTACAAGGCCGGGTGCATTCGC > 2:2376645/7‑150gcggctTGGCAGGTGCTTGCGGTATGCAGTGTTCATCATGGAATCAGGCTCGGTCACAGGATTCGGAAGGTTTCACCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGCGTCAGCAGGTGCACAGTGGTTACAAGGCCGGGTGCATTCGC < 1:2376645/144‑1 gGCCTGGCAGGTGCTTGCGGTATGCAGTGTTCATCATGGAATCAGGCTCGGTCACAGGATTCGGAAGGTTTCACCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGCGTCAGCAGGTGCACAGTGGTTACAAGGCCGGGTGCATTCGCGG < 2:2075388/149‑1 gGCCTGGCAGGTGCTTGCGGTATGCAGTGTTCATCATGGAATCAGGCTCGGTCACAGGATTCGGAAGGTTTCACCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGCGTCAGCAGGTGCACAGTGGTTACAAGGCCGGGTGCATTCGCGG < 2:1907465/149‑1 TGCCTGGCAGGTGCTTGCGGTATGCAGTGTTCATCATGGAATCAGGCTCGGTCACAGGATTCGGAAGGTTTCACCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGCGTCAGCAGGTGCACAGTGGTTACAAGGCCGGGTGCATTCGCGG < 2:550253/150‑1 TGCCTGGCAGGTGCTTGCGGTATGCAGTGTTCATCATGGAATCAGGCTCGGTCACAGGATTCGGAAGGTTTCACCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGCGTCAGCAGGTGCACAGTGGTTACAAGGCCGGGTGCATTCGCGG < 1:1463765/150‑1 TGCCTGGCAGGTGCTTGCGGTATGCAGTGTTCATCATGGAATCAGGCTCGGTCACAGGATTCGGAAGGTTTCACCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGCGTCAGCAGGTGCACAGTGGTTACAAGGCCGGGTGCATTCGCGG > 1:2115041/1‑150 GCCTGGCAGGTGCTTGCGGTATGCAGTGTTCATCATGGAATCAGGCTCGGTCACAGGATTCGGAAGGTTTCACCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGCGTCAGCAGGTGCACAGTGGTTACAAGGCCGGGTGCATTCGCGGG < 2:432703/150‑1 GCCTGGCAGGTGCTTGCGGTATGCAGTGTTCATCATGGAATCAGGCTCGGTCACAGGATTCGGAAGGTTTCACCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGCGTCAGCAGGTGCACAGTGGTTACAAGGCCGGGTGCATTCGCGGG < 2:1800587/150‑1 GCAGGTGCTTGCGGTATGCAGTGTTCATCATGGAATCAGGATAGGTTAAAGGTTTCGGAAGGTTTCACCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGCGTCAGCAGGTGCACAGTGGTTACAAGGCCGGGTGCATTCGCGGGCACGC > 1:1622720/1‑150 TTGCGGTATGCAGTGTTCATCATGGAATCAGGCTCGGTCACAGGATTCGGAAGGTTTCACCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGCGTCAGCAGGTGCACAGTGGTTACAAGGCCGGGTGCATTCGCGGGCACGCCCGCTCCC > 1:1275158/1‑150 TTGCGGTATGCAGTGTTCATCATGGAATCAGGCTCGGTCACAGGATTCGGAAGGTTTCACCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGCGTCAGCAGGTGCACAGTGGTTACAAGGCCGGGTGCATTCGCGGGCACGCCCGCTCCC > 1:2083510/1‑150 TCATGGAATCAGGCTCGGTCACAGGATTCGGAAGGTTTCACCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGCGTCAGCAGGTGCACAGTGGTTACAAGGCCGGGTGCATTCGCGGGCGTGCCCGCgaa < 2:719261/130‑4 TCATGGAATCAGGCTCGGTCACAGGATTCGGAAGGTTTCACCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGCGTCAGCAGGTGCACAGTGGTTACAAGGCCGGGTGCATTCGCGGGCGTGCCCGCgaa > 1:719261/1‑127 CCCGCGAATGCGTCAGCAGGTGCACAGTGGTTACAAGGCCGGGTGCATTCGCGGGCACGCCCGCTCCCACAGGTACGGTGAAACCTTCCGAA > 2:1464736/1‑92 CCCGCGAATGCGTCAGCAGGTGCACAGTGGTTACAAGGCCGGGTGCATTCGCGGGCACGCCCGCTCCCACAGGTACGGTGAAACCTTCCGAA < 1:1464736/92‑1 CCGCGAATGCGTCAGCAGGTGCACAGTGGTTACAAGGCCGGGTGCATTCGCGGGCACGCCCGCTCCCACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCT > 2:1455483/1‑107 CCGCGAATGCGTCAGCAGGTGCACAGTGGTTACAAGGCCGGGTGCATTCGCGGGCACGCCCGCTCCCACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCT < 1:1455483/107‑1 CCGCGAATGCGTCAGCAGGTGCACAGTGGTTACAAGGCCGGGTGCATTCGCGGGCACGCCCGCTCCCACAGGTACGGTGAAACCTTC > 2:185870/1‑87 CCGCGAATGCGTCAGCAGGTGCACAGTGGTTACAAGGCCGGGTGCATTCGCGGGCACGCCCGCTCCCACAGGTACGGTGAAACCTTC < 1:185870/87‑1 CGCGAATGCGTCAGCAGGTGCACAGTGCTTAGAAGGCCGGGTGCATTCGCGGGTACGCCCGCTCCCTCAGATACGGTGAAACAATTCGAATCCTGTGACCGAGCTTGATTCCATGATGAACACTGCATACCGCAAGCACCTGCCAGGCAC > 1:1045101/1‑150 CATTCGCGGGCACGCCCGCTCCCACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCATGATGAACACTGCATACCGCAAGCACCTGCCAGGCACCGACCTGGACTACTTCGACGCCCGCGCGGCGGTCGAGGCGATC > 1:1275714/1‑150 GCACGCCCGCTCCCACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCATGATGAACACTGCATACCGCAAGCACCTGCCAGGCACCGACCTGGACTACTTCGACGCCCGCGCGGCGGTCGAGGCGATCAAGCCCGGC < 1:1909185/150‑1 GCACGCCCGCTCCCACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCATGATGAACACTGCATACCGCAAGCACCTGCCAGGCACCGACCTGGACTACTTCGACGCCCGCGCGGCGGTCGAGGCGATCAAGCCCGGC < 2:2332693/150‑1 ggCCGCTCCCACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGAGTCCATGATGAACACTGCATACCGCAAGCACCTGCCAGGCACCGACCTGGACTACTTCGACGCCCGCGCGGCGGTCGAGGCGATCAAGCCCGGCGCCT > 2:1902628/3‑150 CCGCTCCCACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCATGATGAACACTGCATACCGCAAGCACCTGCCAGGCACCGACCTGGACTACTTCGACGCCCGCGCGGCGGTCGAGGCGATCAAGCCCGGCGCCTAC > 2:1950619/1‑150 CCACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCATGATGAACACTGCATACCGCAAGCACCTGCCAGGCACCGACCTGGACTACTTCGACGCCCGCGCGGCGGTCGAGGCGATCAAGCCCGGCGCCTACGACGGC > 2:555118/1‑150 GGTGCCTGGCAGGTGCTTGCGGTATGCAGTGTTCATCATGGAATCAGGCTCGGTCACAGGATTCGGAAGGTTTCACCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGCGTCAGCAGGTGCACAGTGGTTACAAGGCCGGGTGCATTCGCGGGCACGCCCGCTCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2664216‑2664051‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcattcgcgggcacgcccgctcccACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCATGATGAACACTGCATACCGCAAGCACCTGCCAGGCACCGACCTGGACTACTTCGACGCCCGCGCGGCGGTCGAGGCGATCAAGCCCGGCGCCTACGACGGC > NC_002947/2664132‑2664279 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |