| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 2688155 = | 96 (1.080) | 5 (0.060) | 5/236 | NT | 5.3% | coding (85/462 nt) | PP_2355 | two‑component system response regulator |
| ? | NC_002947 | 2688182 = | 85 (1.000) | coding (58/462 nt) | PP_2355 | two‑component system response regulator | |||||
GTCGACCAAGGCGCCAGCTTCCACTTCACCCTACCCCGAAACACTGCTACCTGAGGCATCGCTACCATCATGCTCAAGCCCATTCTGCTGGTCGAAGACAACCCCCGAGACCTGGAGCTGACCCTGCTGGCCCTGGAGCGCAGCCAGTTGGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2688308‑2688155‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccaGCAGGGTCAGCTCCAGGTCTCGGGGGTTGTCTTCGACCAGCAGAATGGGCTTGAGCATGATGGTAGCGATGCCTCAGGTAGCAGTGTTTCGGGGTAGGGTGAAGTGGAAGCTGGCGCCTTGGTCGACCTGGCCAGTGGCCCAGACTCGA > NC_002947/2688182‑2688330 GTCGACCAAGGCGCCAGCTTCCACTTCACCCTACCCCGAAACACTGCTACCTGAGGCATCGCTACCATCATGCTCAAGCCCATTCTGCTGGTCGAAGACAACCCCCGAGACCTGGAGCTGACCCTGCTGGCCCTGGAGCGCAGCCAGTTG < 1:1305822/150‑1GTCGACCAAGGCGCCAGCTTCCACTTCACCCTACCCCGAAACACTGCTACCTGAGGCATCGCTACCATCATGCTCAAGCCCATTCTGCTGGTCGAAGACAACCCCCGAGACCTGGAGCTGACCCTGCTGGCCCTGGAGCGCAGCCAGTTG > 1:1888843/1‑150 GACCAAGGCGCCAGCTTCCACTTCACCCTACCCCGAAACACTGCTACCTGAGGCATCGCTACCATCATGCTCAAGCCCATTCTGCTGGTCGAAGACAACCCCCGAGACCTGGAGCTGACCCTGCTGGCCCTGGAGCGCAGCCAGTTGGCC < 1:2324838/150‑1 ATCGCTACCATCATGCTCAAGCCCATTCTGCTGGTCGAAGACAACCCCCGAGACCTGGAGCTGACCCTGCTGGCCCTGGAGCGCAGCCAGTTG < 2:1225773/93‑1 ATCGCTACCATCATGCTCAAGCCCATTCTGCTGGTCGAAGACAACCCCCGAGACCTGGAGCTGACCCTGCTGGCCCTGGAGCGCAGCCAGTTG > 1:1225773/1‑93 TCAAGCCCATTCTGCTGGTCGAAGACAACCCCCGAGACCTGGAGCTGACCCTGCTGGCCCTGGAGCGCAGCCAGTTGG > 1:1017869/1‑78 TCAAGCCCATTCTGCTGGTCGAAGACAACCCCCGAGACCTGGAGCTGACCCTGCTGGCCCTGGAGCGCAGCCAGTTGG < 2:1017869/78‑1 TTCTGCTGGTCGAAGACAACCCCCGAGACCTGGAGCTGACCCTGCTGGCCCTGGAGCGCAGCCAGTTG > 1:865701/1‑68 TTCTGCTGGTCGAAGACAACCCCCGAGACCTGGAGCTGACCCTGCTGGCCCTGGAGCGCAGCCAGTTG < 2:865701/68‑1 GGAGCTGACCCTGCTGGCCCTGGAGCGCAGCCAGTTGGCCAACGAGGTCAGCTCCAGGTCTCGGGGGTTGTCTTCGACCAGCAGAATGGGCTTGAGCATGATGGTAGCGATGCCTCAGGTAGCAGTGTTTCGGGGTAGGGTGAAGTGGAA > 2:1494805/1‑150 CCTGCTGGCCCTGGAGCGCAGCCAGTTGGCCAGCAGGGTCAGCTCCAGGTCTCGGGGGTTGTCTTCGACCAGCAGAATGGGCTTGAGCATGATG > 1:1668638/1‑94 CCTGCTGGCCCTGGAGCGCAGCCAGTTGGCCAGCAGGGTCAGCTCCAGGTCTCGGGGGTTGTCTTCGACCAGCAGAATGGGCTTGAGCATGATG < 2:1668638/94‑1 CTGCTGGCCCTGGAGCGCAGCCAGTTGGCCAGCAGGGTCAGCTCCAGGTCTCGGGGGTTGTCTTCGACCAGCAGAATGGGCTTGAGCATGATGGTAGCGATGCCTCAGGTAGC > 1:1332830/1‑113 CTGCTGGCCCTGGAGCGCAGCCAGTTGGCCAGCAGGGTCAGCTCCAGGTCTCGGGGGTTGTCTTCGACCAGCAGAATGGGCTTGAGCATGATGGTAGCGATGCCTCAGGTAGC < 2:1332830/113‑1 CCAGCAGGGTCAGCTCCAGGTCTCGGGGGTTGTCTTCGACCAGCAGAATGGGCTTGAGCATGATGGTAGCGATGCCTCAGGTAGCAGTGTTTCGGGGTAGGGTGAAGTGGAAGCTGGCGCCTTGGTCGACCTGGCCAGTGGCCCAGACTC < 1:2238919/150‑1 CCAGCAGGGTCAGCTCCAGGTCTCGGGGGTTGTCTTCGACCAGCAGAATGGGCTTGAGCATGATGGTAGCGATGCCTCAGGTAGCAGTGTTTCGGGGTAGGGTGAAGTGGAAGCTGGCGCCTTGGTCGACCTGGCCAGTGGCCCAGACTC > 2:2034490/1‑150 CAGCAGGGTCGGCTCCAGGTCTCGGGGGTTGTCTTCGACCAGCAGAATGGGCTTGAGCATGATGGTAGCGATGCCTCAGGTAGCAGTGTTTCGGGGTAGGGTGAAGTGGAAGCTGGCGCCTTGGTCGACCTGGCCAGTGGCCCAGACTCG < 2:947475/150‑1 AGCAGGGTCAGCTCCAGGTCTCGGGGGTTGTCTTCGACCAGCAGAATGGGCTTGAGCATGATGGTAGCGATGCCTCAGGTAGCAGTGTTTCGGGGTAGGGTGAAGTGGAAGCTGGCGCCTTGGTCGACCTGGCCAGTGGCCCAGACTCGA > 2:1636966/1‑150 AGCAGGGTCAGCTCCAGGTCTCGGGGGCTGTCTTCGACCAGCAGAATGGGCTTGAGCATGATGGTAGCGATGCCTCAGGTAGCAGTGTTTCGGGGTAGGGTGAAGTGG < 2:1194739/108‑1 AGCAGGGTCAGCTCCAGGTCTCGGGGGCTGTCTTCGACCAGCAGAATGGGCTTGAGCATGATGGTAGCGATGCCTCAGGTAGCAGTGTTTCGGGGTAGGGTGAAGTGG > 1:1194739/1‑108 GTCGACCAAGGCGCCAGCTTCCACTTCACCCTACCCCGAAACACTGCTACCTGAGGCATCGCTACCATCATGCTCAAGCCCATTCTGCTGGTCGAAGACAACCCCCGAGACCTGGAGCTGACCCTGCTGGCCCTGGAGCGCAGCCAGTTGGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2688308‑2688155‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccaGCAGGGTCAGCTCCAGGTCTCGGGGGTTGTCTTCGACCAGCAGAATGGGCTTGAGCATGATGGTAGCGATGCCTCAGGTAGCAGTGTTTCGGGGTAGGGTGAAGTGGAAGCTGGCGCCTTGGTCGACCTGGCCAGTGGCCCAGACTCGA > NC_002947/2688182‑2688330 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |