| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 2694280 = | 87 (0.980) | 5 (0.060) | 5/238 | NT | 5.8% | coding (528/2394 nt) | PP_2362 | usher protein |
| ? | NC_002947 | 2694299 = | 79 (0.920) | coding (547/2394 nt) | PP_2362 | usher protein | |||||
TCAGCAGGCGCTGCTCGTCTGTAAAGCGCCAGGTGGTGTCGTAACGCATGAAGCCACGGCGGGTATCGTCCGCCTGTGCGCCCTTGAAAGACTGACGCCACTGCCCGGTACTGGAAAAGGTACCCCAGCTGTCGAACAGGCGCAGCTCGTTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2694431‑2694280‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gttcGACAGCTGGGGTACCTTTTCCAGTACCGGGCAGTGGCGTCAGTCTTTCAAGGGCGCACAGGCGGACGATACCCGCCGTGGCTTCATGCGTTACGACACCACCTGGCGCTTTACAGACGAGCAGCGCCTGCTGACCTACGAAGCCGGT > NC_002947/2694299‑2694445 tccgaAGGCGCTGCTCGTCTGTAAAGCGCCAGGTGGTGTCGTAACGCATGAAGCCACGGCGGGTATCGTCCGCCTGTGCGCCCTTGAAAGACTGACGCCACTGCCCGGTACTGGAAAAGGTACCCCAGCTGTCGAACAGGCGCAGCTCGT < 2:1720690/145‑1TCAGCAGGCGCTGCTCGTCTGTAAAGCGCCAGGTGGTGTCGTAACGCATGAAGCCACGGCGGGTATCGTCCGCCTGTGCGCCCTTGAAAGACTGACGCCACTGCCCGGTACTGGAAAAGGTACCCCAGCTGTCGAACAGGCGCAGCTCGT > 1:2400684/1‑150TCAGCAGGCGCTGCTCGTCTGTAAAGCGCCAGGTGGTGTCGTAACGCATGAAGCCACGGCGGGTATCGTCCGCCTGTGCGCCCTTGAAAGACTGACGCCACTGCCCGGTACTGGAAAAGGTACCCCAGCTGTCGAACAGGCGCAGCTCGT > 2:1627103/1‑150 CAGCAGGCGCTGCTCGTCTGTAAAGCGCCAGGTGGTGTCGTAACGCATGAAGCCACGGCGGGTATCGTCCGCCTGTGCGCCCTTGAAAGACTGACGCCACTGCCCGGTACTGGAAAAGGTACCCCAGCTGTCGAACAGGCGCAGCTCGTT < 1:299332/150‑1 CAGCTGTCGAACAGGCGCAGCTCGTTCGACAGCTGGGGTACCTTTTCCAGTACCGGGCAGTGGCGTCAGTCTTTCAAGG > 1:110681/1‑79 CAGCTGTCGAACAGGCGCAGCTCGTTCGACAGCTGGGGTACCTTTTCCAGTACCGGGCAGTGGCGTCAGTCTTTCAAGG < 2:110681/79‑1 TCGAACAGGCGCAGCTCGTTCGACAGCTGGGGTACCTTTTCCAGTACCGGGCAGTGGCGTCAGTCTTTCAAG < 1:1114148/72‑1 TCGAACAGGCGCAGCTCGTTCGACAGCTGGGGTACCTTTTCCAGTACCGGGCAGTGGCGTCAGTCTTTCAAG > 2:1114148/1‑72 GAACAGGCGCAGCTCGTTCGACAGCTGGGGTACCTTTTCCAGTACCGGGCAGTGGCGTCAGTCTTTCAAGGGCGCACAGGCGGACGATACCCGCCGTGGCTTCATGCGTTACGACACCACCTGGCGCTTTACAGACGAGCAGCGCCTGCT > 1:588732/1‑150 GTTCGACAGCTGGGGTACCTTTTCCAGTACCGGGCAGTGGCGTCAGTCTTTCAAGGGCGCACAGGCGGACGATACCCGCCGTGGCTTCATGCGTTACGACACCACCTGGCGCTTTACAGACGAGCAGCGCCTGCTGACCTACGAAGCCGG > 2:663951/1‑150 GTTCGACAGCTGGGGTACCTTTTCCAGTACCGGGCAGTGGCGTCAGTCTTTCAAGGGCGCACAGGCGGACGATACCCGCCGTGGCTTCATGCGTTACGACACCACCTGGCGCTTTACAGACGAGCAGCGCCTGCTGACCTACGAAGCCGG > 2:280264/1‑150 TTCGACCGCTGGGGTACCTTTTCCAGTACCGGGCAGTGGCGTCAGTCTTTCAAGGGCTCACAGGCGGACGATACCCGCCGTGGCTTCATGCGTTACGACACCACCTGGCGCTTTACAGACGAGCAGCGCCTGCTGACCTACGAAGCCGGT > 1:732058/1‑150 TTCGACAGCTGGGGTACCTTTTCCAGTACCGGGCAGTGGCGTCAGTCTTTCAAGGGCGCACAGGCGGACGATACCCGCCGTGGCTTCATGCGTTACGACACCACCTGGCGCTTTACAGACGAGCAGCGCCTGCTGACCTACGAAGCCGGT < 1:80954/150‑1 TTCGACAGCTGGGGTACCTTTTCCAGTACCGGGCAGTGGCGTCAGTCTTTCAAGGGCGCACAGGCGGACGATACCCGCCGTGGCTTCATGCGTTACGACACCACCTGGCGCTTTACAGACGAGCAGCGCCTGCTGACCTACGAAGCCGGT < 1:101285/150‑1 TTCGACAGCTGGGGTACCTTTTCCAGTACCGGGCAGTGGCGTCAGTCTTTCAAGGGCGCACAGGCGGACGATACCCGCCGTGGCTTCATGCGTTACGACACCACCTGGCGCTTTACAGACGAGCAGCGCCTGCTGACCTACGAAGCCGGT < 1:280264/150‑1 TTCGACAGCTGGGGTACCTTTTCCAGTACCGGGCAGTGGCGTCAGTCTTTCAAGGGCGCACAGGCGGACGATACCCGCCGTGGCTTCATGCGTTACGACACCACCTGGCGCTTTACAGACGAGCAGCGCCTGCTGACCTACGAAGCCGGT > 2:80954/1‑150 TTCGACAGCTGGGGTACCGTTTCCAGTACCGGGCAGTGGCGTCAGTCTTTCCAGGGCGTACCGGCTTAGCAGACCCGCCGTGCCTTCATGCGTTACGACACCACCTAGCGCTTTTCAGACGAGCAGCGCCTGCTGACCTACGAAGCCGGT < 1:1748918/150‑1 TCAGCAGGCGCTGCTCGTCTGTAAAGCGCCAGGTGGTGTCGTAACGCATGAAGCCACGGCGGGTATCGTCCGCCTGTGCGCCCTTGAAAGACTGACGCCACTGCCCGGTACTGGAAAAGGTACCCCAGCTGTCGAACAGGCGCAGCTCGTTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2694431‑2694280‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gttcGACAGCTGGGGTACCTTTTCCAGTACCGGGCAGTGGCGTCAGTCTTTCAAGGGCGCACAGGCGGACGATACCCGCCGTGGCTTCATGCGTTACGACACCACCTGGCGCTTTACAGACGAGCAGCGCCTGCTGACCTACGAAGCCGGT > NC_002947/2694299‑2694445 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |