| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 2901013 = | 69 (0.780) | 5 (0.060) | 5/232 | NT | 7.2% | coding (52/1908 nt) | quiC | 3‑dehydroshikimate dehydratase |
| ? | NC_002947 | 2901061 = | 63 (0.750) | coding (100/1908 nt) | quiC | 3‑dehydroshikimate dehydratase | |||||
GCAGCCTTCAAAGTCGCGGAAAGGCTGGAACAAGGTGATGGCAATGCCCAGGTCGGCGCACATCTGGCGCACCTGGCGCGGGCTGCCAGCGTAATAGAGCAGATCGTTCTCGAAGATCTCGACGCCGTCAAAACCGGCGGCGGCGATGGCTTCGAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2901168‑2901013‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cttcgagAACGATCTGCTCTATTACGCTGGCAGCCCGCGCCAGGTGCGCCAGATGTGCGCCGACCTGGGCATTGCCATCACCTTGTTCCAGCCTTTCCGCGACTTTGAAGGCTGCCGCCGTGACCGCCTGCAGAAAAACCTCGACCGCGCCGAACG > NC_002947/2901061‑2901209 GCAGCCTTCAAAGTCGCGGAAAGGCTGGAACAAGGTGATGGCAATGCCCAGGTCGGCGCACATCTGGCGCACCTGGCGCGGGCTGCCAGCGTAATAGAGCAGATCGTTCTCGAAGATCTCGACGCCGTCAAAACCGGCGGCGGCGATGGC < 1:410291/150‑1 CAGCCTTCAAAGGCGCGGAAAGGCTGGAACAAGGTGATGGCAATGCCCAGGTCGGCGCACATCTGGCGCACCTGGCGCGGGCTGCCAGCGTAATAGAGCAGATCGTTCTCGAAGATCTCGACGCCGTCAAAACCGGCGGCGGCGATGGCT < 1:255915/150‑1 AGCCTTCAAAGTCGCGGAAAGGCTGGAACAAGGTGATGGCAATGCCCAGGTCGGCGCACATCTGGCGCACCTGGCGCGGGCTGCCAGCGTAATAGAGCAGATCGTTCTCGAAGATCTCGACGCCGTCAAAACCGGCGGCGGCGATGGCTT < 1:1779133/150‑1 GCCTTCAAAGTCGCGGAAAGGCTGGAACAAGGTGATGGCAATGCCCAGGTCGGCGCACATCTGGCGCACCTGGCGCGGGCTGCCAGCGTAATAGAGCAGATCGTTCTCGAAGATCTCGACGCCGTCAAAACCGGCGGCGGCGATGGCTTC < 1:2180251/150‑1 CTTCAAAGTCGCGGAAAGGCTGGAACAAGGTGATGGCAATGCCCAGGTCGGCGCACATCTGGCGCCCCTGGCGCGGGCTGCCAGCGTAATAGAGCAGATCGTTCTCGAAGATCTCGACGCCGTCAAAACCGGCGGCGGCGATGGCTTCGA < 2:1981963/150‑1 CTTCAAAGTCGCGGAAAGGCTGGAACAAGGTGATGGCAATGCCCAGGTCGGCGCACATCTGGCGCACCTGGCGCGGGCTGCCAGCGTAATAGAGCAGATCGTTCTCGAAGATCTCGACGCCGTCAAAACCGGCGGCGGCGATGGCTTCGA < 2:753553/150‑1 TTCAAAGTCGCGGAAAGGCTGGAACAAGGTGATGGCAATGCCCAGGTCGGCGCACATCTGGCGCACCTGGCGCGGGCTGCCAGCGTAATAGAGCAGATCGTTCTCGAAGATCTCGACGCCGTCAAAACCGGCGGCGGCGATGGCTTCGA < 1:748475/149‑1 TTCAAAGTCGCGGAAAGGCTGGAACAAGGTGATGGCAATGCCCAGGTCGGCGCACATCTGGCGCACCTGGCGCGGGCTGCCAGCGTAATAGAGCAGATCGTTCTCGAAGATCTCGACGCCGTCAAAACCGGCGGCGGCGATGGCTTCGA > 2:748475/1‑149 CAAGGTGATGGCAATGCCCAGGTCGGCGCACATCTGGCGCACCTGGCGCGTGCTGCCAGCGTAATAGAGCAGATCGTTCTCGAAGATCTCGACGCCGTCAAAACCGGCGGCGGCGATGGCTTCGA < 2:1564711/125‑1 CAAGGTGATGGCAATGCCCAGGTCGGCGCACATCTGGCGCACCTGGCGCGTGCTGCCAGCGTAATAGAGCAGATCGTTCTCGAAGATCTCGACGCCGTCAAAACCGGCGGCGGCGATGGCTTCGA > 1:1564711/1‑125 CTCGAAGATCTCGACGCCGTCAAAACCGGCGGCGGCGATGGCTTCGAGAACGATCTGCTCTATTACGCTGGCAGCCCGCGCCAGGTGCGCCAGATGTGCGCCGACCTGGGCATTGCCATCACCTTGTTCCAGCCTTTCCGCGACTTTGAA > 2:347705/1‑150 TCGAAGATCTCGACGCCGTCAAAACCGGCGGCGGCGATGGCTTCGAGAACGATCTGCTCTATTACGCTGGCAGCCCGCGCCAGGTGCGCCAGATGTGCGCCGACCTGGGCATTGCCATCACCTTGTTCCAGCCTTTCCGCGACTTT < 2:1483046/146‑1 TCGAAGATCTCGACGCCGTCAAAACCGGCGGCGGCGATGGCTTCGAGAACGATCTGCTCTATTACGCTGGCAGCCCGCGCCAGGTGCGCCAGATGTGCGCCGACCTGGGCATTGCCATCACCTTGTTCCAGCCTTTCCGCGACTTT > 1:1483046/1‑146 GAAGATCTCGACGCCGTCAAAACCGGCGGCGGCGATGGCTTCGAGAACGATCTGCTCTATTACGCTGGCAGCCCGCGCCAGGTGCGCCAGATGTGCGCCGACCTGGGCATTGCCATCACCTTGTTCCAGCCTTTCCGCGACTTTGAAGGC > 2:1511604/1‑150 TCGACGCCGTCAAAACCGGCGGCGGCGAGATCTTCGAGAACGATCTGCTCTATTACGCTGGCAGCCCGCGCCAGGTGCGCCAGATGTGCGCCGACCTGGGCATTGCCATCACCTTGTTCCAGCCTTTCCGCGACTTTGAAGGCTGCCGCC > 2:2095630/1‑150 TTCGAGAACGATCTGCTCTATTACGCTGGCAGCCCGCGCCAGGTGCGCCAGATGTGCGCCGACCTGGGCATTGCCATCACCTTGTTCCAGCCTTTCCGCGACTTTGAAGGCTGCCGCCGTGACCGCCTGCAGAAAAACCTCGCCCGCGCC > 1:1595114/1‑150 TTCGAGAACGATCTGCTCTATTACGCTGGCAGCCCGCGCCAGGTGCGCCAGATGTGCGCCGACCTGGGCATTGCCATCACCTTGTTCCAGCCTTTCCGCGACTTTGAAGGCTGCCGCCGTGACCGCCTGCAGAAAAACCTCGACCGCGCC > 1:309500/1‑150 AGAACGATCTGCTCTATTACGCTGGCAGCCCGCGCCAGGTGCGCCAGATGTGCGCCGACCTGGGCATTGCCATCACCTTGTTCCAGCCTTTCCGCGACTTTGAAGGCTGCCGCCGTGACCGCCTGCAGAAAAACCTCGACCGCGCCGAAC > 1:1322948/1‑150 GAACGATCTGCTCTATTACGCTGGCAGCCCGCGCCAGGTGCGCCAGATGTGCGCCGACCTGGGCATTGCCATCACCTTGTTCCAGCCTTTCCGCGACTTTGAAGGCTGCCGCCGTGACCCCCTGCAGAAAAACCTCGAACGCGCCGAACG > 2:448010/1‑150 GCAGCCTTCAAAGTCGCGGAAAGGCTGGAACAAGGTGATGGCAATGCCCAGGTCGGCGCACATCTGGCGCACCTGGCGCGGGCTGCCAGCGTAATAGAGCAGATCGTTCTCGAAGATCTCGACGCCGTCAAAACCGGCGGCGGCGATGGCTTCGAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2901168‑2901013‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cttcgagAACGATCTGCTCTATTACGCTGGCAGCCCGCGCCAGGTGCGCCAGATGTGCGCCGACCTGGGCATTGCCATCACCTTGTTCCAGCCTTTCCGCGACTTTGAAGGCTGCCGCCGTGACCGCCTGCAGAAAAACCTCGACCGCGCCGAACG > NC_002947/2901061‑2901209 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |