| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 2906132 = | 70 (0.790) | 5 (0.060) | 4/236 | NT | 6.5% | coding (1294/1359 nt) | PP_2558 | outer membrane efflux protein |
| ? | NC_002947 | 2906156 = | 76 (0.900) | coding (1270/1359 nt) | PP_2558 | outer membrane efflux protein | |||||
CGACCCGCAAGGGCTTCAAGGAAGGTGGTACCAGCACCAACTCGGATGTGCTCAATGCCGAGGAGCTGCTGTATGACGCCCGCCATGACCTGTTCGAGGCCAAGCTCAACTACCTGATGTCGCGCCTGCGGCTGGCCTCGTCGGTGGGCAGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2906284‑2906132‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagccGCAGGCGCGACATCAGGTAGTTGAGCTTGGCCTCGAACAGGTCATGGCGGGCGTCATACAGCAGCTCCTCGGCATTGAGCACATCCGAGTTGGTGCTGGTACCACCTTCCTTGAAGCCCTTGCGGGTCGAGGTCAGCGAACGCTCGT > NC_002947/2906156‑2906302 CGACCCGCAAGGGCTTCAAGGAAGGTGGTACCAGCACCAACTCGGATGTGCTCAATGCCGAGGAGCTGCTGTATGACGCCCGCCATGACCTGTTCGAGGCCAAGCTCAACTACCTGATGTCGCGCCTGCGGCTGGCCTCGTCGGTGGGCA < 1:527508/150‑1 GACCCGCAAGGGCTTCAAGGAAGGTGGTACCAGCACCAACTCGGATGTGCTCAATGCCGAGGAGCTGCTGTATGACGCCCGCCATGACCTGTTCGAGGCCAAGCTCAACTACCTGATGTCGCGCCTGCGGCTGGCCTCGTCGGTGGGCAG > 1:486868/1‑150 GACCCGCAAGGGCCTCAAGGAAGGTGGTACCAGCACCAACTCGGATGTGCTCAATGCCGAGGAGCTGCTGTATGACGCCCGCCATGACCTGTTCGAGGCCAAGCTCAACTACCTGATGTCGCGCCTGCGGCTGGCCTCGTCGGTGGGCAG < 1:1952913/150‑1 TCAATGCCGAGGAGCTGCTGTATGACGCCCGCCATGAGCTGTTCGAGGCCAAGCTCAACTACCTGATGTCGCGCCTGCGGCTGGCCTCGTCGGTGGGCAGC > 1:1951096/1‑101 TCAATGCCGAGGAGCTGCTGTATGACGCCCGCCATGACCTGTTCGAGGCCAAGCTCAACTACCTGATGTCGCGCCTGCGGCTGGCCTCGTCGGTGGGCAGC < 2:1951096/101‑1 GCTGGCCTCGTCGGTGGGCAGCCGCAGGCGCGACATCAGGTAGTTGAGCTTGGCCTCGAACAGG > 1:454655/1‑64 GCTGGCCTCGTCGGTGGGCAGCCGCAGGCGCGACATCAGGTAGTTGAGCTTGGCCTCGAACAGG < 2:454655/64‑1 TGGCCTCGTCGGTGGGCAGCCGCAGGCGCGACATCAGGTAGTTGAGCTTGGCCTCGAACAGGTCATGGCGGGCGTCATACAGCAGCTCCTCGGCATTGAGCACATCCGAGTTGGTGCTGGTACCACCTTCCTTGAAGCCCTTGCGGGTCG > 1:1144669/1‑150 TGGCCTCGTCGGTGGGCAGCCGCAGGCGCGACATCAGGTAGTTGAGCTTGGCCTCGAACAGGTCATGGCGGGC > 1:950453/1‑73 TGGCCTCGTCGGTGGGCAGCCGCAGGCGCGACATCAGGTAGTTGAGCTTGGCCTCGAACAGGTCATGGCGGGC < 2:950453/73‑1 CAGCCGCAGGCGCGACATCAGGTAGTTGAGCTTGGCCTCGAACAGGTCATGGCGGGCGTCATACAGCAGCTCCTCGGCATTGAGCACATCCGAGTTGGTGCTGGTACCACCTTCCTTGAAGCCCTTGCGGGTCGAGGTCAGCGAACGCTC > 2:1731/1‑150 GCCGCAGGCGCGACATCAGGTAGTTGAGCTTGGCCTCGAACAGGTCATGGCGGGCGTCATACAGCAGCTCCTCGGCATTGAGCACATCCGAGTTGGTGCTGGTACCACCTTCCTTGAAGCCCTTGCGGGTCGAGGTCAGCGAACGCTCGT < 1:1286016/150‑1 CGACCCGCAAGGGCTTCAAGGAAGGTGGTACCAGCACCAACTCGGATGTGCTCAATGCCGAGGAGCTGCTGTATGACGCCCGCCATGACCTGTTCGAGGCCAAGCTCAACTACCTGATGTCGCGCCTGCGGCTGGCCTCGTCGGTGGGCAGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2906284‑2906132‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagccGCAGGCGCGACATCAGGTAGTTGAGCTTGGCCTCGAACAGGTCATGGCGGGCGTCATACAGCAGCTCCTCGGCATTGAGCACATCCGAGTTGGTGCTGGTACCACCTTCCTTGAAGCCCTTGCGGGTCGAGGTCAGCGAACGCTCGT > NC_002947/2906156‑2906302 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |